Wall clock time and date at job start Tue Mar 31 2020 10:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99997 * 2 1 4 4 H 1.48497 * 109.47142 * 270.00265 * 3 2 1 5 5 H 1.48502 * 109.46951 * 30.00102 * 3 2 1 6 6 H 1.48497 * 109.47225 * 150.00233 * 3 2 1 7 7 C 1.37871 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00542 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00168 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47298 * 184.86108 * 9 7 2 11 11 C 1.46904 * 111.00048 * 63.01760 * 10 9 7 12 12 C 1.50699 * 109.47394 * 66.04403 * 11 10 9 13 13 C 1.32556 * 120.00132 * 127.13114 * 12 11 10 14 14 C 1.47825 * 120.00043 * 8.25054 * 13 12 11 15 15 C 1.39556 * 120.12939 * 215.92432 * 14 13 12 16 16 C 1.37959 * 119.90878 * 180.02562 * 15 14 13 17 17 C 1.38325 * 120.16843 * 359.97438 * 16 15 14 18 18 C 1.38543 * 120.26074 * 0.03887 * 17 16 15 19 19 F 1.35103 * 119.95858 * 179.97438 * 18 17 16 20 20 C 1.38217 * 120.08879 * 359.96091 * 18 17 16 21 21 C 1.46901 * 111.00371 * 299.06130 * 10 9 7 22 22 C 1.50693 * 109.47066 * 288.02125 * 21 10 9 23 23 C 1.34512 * 125.79383 * 94.70468 * 22 21 10 24 24 C 1.41387 * 106.84624 * 180.02562 * 23 22 21 25 25 C 1.34518 * 106.83393 * 359.97438 * 24 23 22 26 26 O 1.34298 * 108.42478 * 359.73987 * 25 24 23 27 27 H 0.97003 * 120.00195 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46703 * 64.86124 * 9 7 2 29 29 H 1.09001 * 109.46762 * 304.86562 * 9 7 2 30 30 H 1.09009 * 109.46803 * 306.04286 * 11 10 9 31 31 H 1.08996 * 109.47168 * 186.04894 * 11 10 9 32 32 H 1.07994 * 119.99643 * 307.13436 * 12 11 10 33 33 H 1.07999 * 120.00175 * 188.25420 * 13 12 11 34 34 H 1.07999 * 120.04683 * 359.74677 * 15 14 13 35 35 H 1.08000 * 119.91993 * 179.97438 * 16 15 14 36 36 H 1.08003 * 119.87151 * 180.02562 * 17 16 15 37 37 H 1.08007 * 120.08795 * 179.97438 * 20 18 17 38 38 H 1.09003 * 109.46824 * 48.01727 * 21 10 9 39 39 H 1.09001 * 109.47554 * 168.01570 * 21 10 9 40 40 H 1.08003 * 126.57691 * 359.96424 * 23 22 21 41 41 H 1.07993 * 126.57974 * 179.97438 * 24 23 22 42 42 H 1.08003 * 125.78385 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2013 -3.6132 0.1162 11 6 2.9250 -3.5562 1.3934 12 6 1.9606 -3.7873 2.5280 13 6 2.2130 -4.7230 3.4324 14 6 3.5199 -5.4138 3.4362 15 6 3.5961 -6.7670 3.7689 16 6 4.8182 -7.4070 3.7715 17 6 5.9681 -6.7111 3.4447 18 6 5.9006 -5.3675 3.1135 19 9 7.0276 -4.6936 2.7957 20 6 4.6819 -4.7156 3.1074 21 6 3.1351 -3.6298 -1.0177 22 6 2.4086 -4.0760 -2.2602 23 6 1.8520 -3.2670 -3.1795 24 6 1.2813 -4.1015 -4.1679 25 6 1.5240 -5.3706 -3.7938 26 8 2.2123 -5.3491 -2.6408 27 1 -0.4850 0.8400 0.0004 28 1 0.6909 -2.5953 -0.9307 29 1 0.5609 -2.5202 0.8429 30 1 3.3890 -2.5761 1.5046 31 1 3.6957 -4.3268 1.4089 32 1 1.0638 -3.1905 2.6043 33 1 1.4639 -4.9808 4.1663 34 1 2.7001 -7.3113 4.0284 35 1 4.8774 -8.4541 4.0294 36 1 6.9223 -7.2170 3.4478 37 1 4.6293 -3.6681 2.8496 38 1 3.5372 -2.6284 -1.1719 39 1 3.9514 -4.3205 -0.8062 40 1 1.8419 -2.1872 -3.1647 41 1 0.7523 -3.7814 -5.0533 42 1 1.2210 -6.2566 -4.3320 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308649252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:55 Heat of formation + Delta-G solvation = 25.860994 kcal Electronic energy + Delta-G solvation = -25691.473759 eV Core-core repulsion = 21939.526629 eV Total energy + Delta-G solvation = -3751.947130 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.82066 -41.94371 -39.26616 -37.18406 -34.26747 -32.54598 -32.32758 -30.58600 -30.34967 -29.14235 -27.19440 -25.85282 -24.21135 -22.84309 -22.42761 -21.16068 -20.91238 -19.59257 -18.99864 -17.15513 -16.65080 -16.27795 -16.20899 -16.13078 -15.63274 -15.49772 -15.00193 -14.78090 -14.39523 -14.18851 -13.70943 -13.47178 -13.24731 -13.02958 -12.62342 -12.26441 -12.23685 -12.17663 -12.06459 -11.81216 -11.55090 -11.28229 -11.06938 -10.98238 -10.71746 -10.44918 -10.30141 -10.06678 -9.70934 -9.59417 -9.31421 -8.72007 -8.49244 -8.14414 -7.88889 -7.28144 -6.09811 -4.19544 1.00332 1.23283 2.27725 2.61546 3.21624 3.22402 3.30339 3.32159 3.58479 3.73253 4.28024 4.34068 4.75600 4.85042 5.00660 5.09722 5.19487 5.21259 5.31368 5.36258 5.49551 5.58756 5.69260 5.77057 5.84151 5.94191 6.03996 6.09548 6.22055 6.24382 6.30059 6.37091 6.39462 6.52037 6.60416 6.67221 6.85249 6.93935 7.07871 7.11558 7.20761 7.46567 7.72784 7.83263 7.93523 8.11866 8.18917 8.89594 9.47420 10.95107 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009466 B = 0.004683 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.394152 B = 5977.461491 C = 7605.636382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.070 3.930 3 Si 0.885 3.115 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.553 4.553 8 H 0.057 0.943 9 C 0.180 3.820 10 N -0.534 5.534 11 C 0.067 3.933 12 C -0.073 4.073 13 C -0.170 4.170 14 C -0.003 4.003 15 C -0.126 4.126 16 C -0.093 4.093 17 C -0.166 4.166 18 C 0.097 3.903 19 F -0.142 7.142 20 C -0.151 4.151 21 C 0.134 3.866 22 C 0.020 3.980 23 C -0.200 4.200 24 C -0.213 4.213 25 C -0.063 4.063 26 O -0.176 6.176 27 H 0.263 0.737 28 H 0.035 0.965 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.142 0.858 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.814 -12.720 3.257 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.133 4.133 3 Si 0.712 3.288 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.592 4.592 8 H 0.075 0.925 9 C 0.055 3.945 10 N -0.258 5.258 11 C -0.059 4.059 12 C -0.091 4.091 13 C -0.188 4.188 14 C -0.003 4.003 15 C -0.144 4.144 16 C -0.111 4.111 17 C -0.185 4.185 18 C 0.077 3.923 19 F -0.121 7.121 20 C -0.170 4.170 21 C 0.006 3.994 22 C -0.031 4.031 23 C -0.220 4.220 24 C -0.232 4.232 25 C -0.131 4.131 26 O -0.072 6.072 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.148 0.852 37 H 0.160 0.840 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.167 0.833 41 H 0.158 0.842 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 6.534 -13.259 3.400 15.167 hybrid contribution 0.734 2.114 -0.341 2.264 sum 7.268 -11.145 3.059 13.652 Atomic orbital electron populations 1.69938 1.05977 1.26885 1.49603 1.24900 0.94690 0.98955 0.94774 0.86714 0.79977 0.83834 0.78248 1.20576 1.21123 1.19921 1.21654 0.93107 0.92041 1.52350 0.92541 1.19893 0.91117 0.85045 0.98474 1.62572 1.16573 1.47482 0.99144 1.21604 0.94954 1.00683 0.88708 1.23500 0.99502 0.93454 0.92657 1.21438 0.95110 0.99350 1.02930 1.18933 0.92997 0.93022 0.95329 1.21318 0.97910 0.93948 1.01266 1.20880 0.91710 0.99799 0.98696 1.21094 1.00100 0.92911 1.04407 1.17621 0.82255 0.90765 1.01613 1.91495 1.49769 1.80343 1.90490 1.21558 0.90703 1.01834 1.02902 1.20402 0.92657 1.00180 0.86187 1.22413 1.02781 0.80214 0.97668 1.21677 1.03534 1.01105 0.95648 1.21780 1.06225 0.93076 1.02152 1.23797 1.01432 0.99305 0.88531 1.83990 1.58490 1.29971 1.34787 0.92742 0.94652 0.94460 0.92160 0.90736 0.85690 0.85957 0.85362 0.85320 0.85246 0.83993 0.90084 0.91429 0.83295 0.84218 0.78988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.88 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.55 -14.12 7.34 -34.44 -0.25 -14.37 16 8 H 0.06 1.42 5.95 -52.48 -0.31 1.11 16 9 C 0.18 4.37 4.79 -4.98 -0.02 4.35 16 10 N -0.53 -11.04 4.65 -238.96 -1.11 -12.15 16 11 C 0.07 1.23 3.49 -4.97 -0.02 1.21 16 12 C -0.07 -1.24 9.16 -36.22 -0.33 -1.57 16 13 C -0.17 -2.42 9.80 -37.57 -0.37 -2.79 16 14 C 0.00 -0.04 5.22 -105.02 -0.55 -0.58 16 15 C -0.13 -1.46 9.78 -39.19 -0.38 -1.85 16 16 C -0.09 -0.96 10.03 -39.65 -0.40 -1.36 16 17 C -0.17 -1.90 10.02 -39.44 -0.40 -2.29 16 18 C 0.10 1.31 7.29 -39.48 -0.29 1.02 16 19 F -0.14 -2.04 17.26 2.25 0.04 -2.00 16 20 C -0.15 -2.15 7.27 -39.13 -0.28 -2.44 16 21 C 0.13 2.59 5.34 -4.98 -0.03 2.56 16 22 C 0.02 0.39 6.27 -35.63 -0.22 0.17 16 23 C -0.20 -3.89 9.86 -39.70 -0.39 -4.28 16 24 C -0.21 -3.54 10.91 -39.70 -0.43 -3.97 16 25 C -0.06 -0.97 12.09 29.42 0.36 -0.62 16 26 O -0.18 -3.27 10.65 5.70 0.06 -3.21 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.04 0.95 6.73 -51.93 -0.35 0.60 16 29 H 0.04 0.97 6.50 -51.93 -0.34 0.63 16 30 H 0.06 1.19 6.41 -51.92 -0.33 0.86 16 31 H 0.07 1.27 4.44 -51.93 -0.23 1.04 16 32 H 0.13 2.29 6.83 -52.49 -0.36 1.93 16 33 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 37 H 0.14 2.09 6.12 -52.48 -0.32 1.77 16 38 H 0.08 1.64 6.15 -51.93 -0.32 1.32 16 39 H 0.07 1.18 7.81 -51.93 -0.41 0.77 16 40 H 0.15 3.05 8.06 -52.48 -0.42 2.63 16 41 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 42 H 0.19 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 352.47 15.07 5.31 5.31 Total: -1.00 -29.05 352.47 -9.15 -38.20 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.06 Total: 7.52 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -4.11 Total: -25.03 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.37 Total: -36.37 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: 0.06 Total: -3.21 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.05 -9.15 -38.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308649252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.065 kcal (2) G-P(sol) polarization free energy of solvation -29.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds