Wall clock time and date at job start Tue Mar 31 2020 10:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99997 * 2 1 4 4 H 1.48497 * 109.47142 * 270.00265 * 3 2 1 5 5 H 1.48502 * 109.46951 * 30.00102 * 3 2 1 6 6 H 1.48497 * 109.47225 * 150.00233 * 3 2 1 7 7 C 1.37871 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00542 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00168 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.47298 * 184.86108 * 9 7 2 11 11 C 1.46904 * 111.00048 * 63.01760 * 10 9 7 12 12 C 1.50699 * 109.47394 * 66.04403 * 11 10 9 13 13 C 1.32556 * 120.00132 * 127.13114 * 12 11 10 14 14 C 1.47825 * 120.00043 * 8.25054 * 13 12 11 15 15 C 1.39556 * 120.12939 * 215.92432 * 14 13 12 16 16 C 1.37959 * 119.90878 * 180.02562 * 15 14 13 17 17 C 1.38325 * 120.16843 * 359.97438 * 16 15 14 18 18 C 1.38543 * 120.26074 * 0.03887 * 17 16 15 19 19 F 1.35103 * 119.95858 * 179.97438 * 18 17 16 20 20 C 1.38217 * 120.08879 * 359.96091 * 18 17 16 21 21 C 1.46901 * 111.00371 * 299.06130 * 10 9 7 22 22 C 1.50693 * 109.47066 * 288.02125 * 21 10 9 23 23 C 1.34512 * 125.79383 * 94.70468 * 22 21 10 24 24 C 1.41387 * 106.84624 * 180.02562 * 23 22 21 25 25 C 1.34518 * 106.83393 * 359.97438 * 24 23 22 26 26 O 1.34298 * 108.42478 * 359.73987 * 25 24 23 27 27 H 0.97003 * 120.00195 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46703 * 64.86124 * 9 7 2 29 29 H 1.09001 * 109.46762 * 304.86562 * 9 7 2 30 30 H 1.09009 * 109.46803 * 306.04286 * 11 10 9 31 31 H 1.08996 * 109.47168 * 186.04894 * 11 10 9 32 32 H 1.07994 * 119.99643 * 307.13436 * 12 11 10 33 33 H 1.07999 * 120.00175 * 188.25420 * 13 12 11 34 34 H 1.07999 * 120.04683 * 359.74677 * 15 14 13 35 35 H 1.08000 * 119.91993 * 179.97438 * 16 15 14 36 36 H 1.08003 * 119.87151 * 180.02562 * 17 16 15 37 37 H 1.08007 * 120.08795 * 179.97438 * 20 18 17 38 38 H 1.09003 * 109.46824 * 48.01727 * 21 10 9 39 39 H 1.09001 * 109.47554 * 168.01570 * 21 10 9 40 40 H 1.08003 * 126.57691 * 359.96424 * 23 22 21 41 41 H 1.07993 * 126.57974 * 179.97438 * 24 23 22 42 42 H 1.08003 * 125.78385 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2013 -3.6132 0.1162 11 6 2.9250 -3.5562 1.3934 12 6 1.9606 -3.7873 2.5280 13 6 2.2130 -4.7230 3.4324 14 6 3.5199 -5.4138 3.4362 15 6 3.5961 -6.7670 3.7689 16 6 4.8182 -7.4070 3.7715 17 6 5.9681 -6.7111 3.4447 18 6 5.9006 -5.3675 3.1135 19 9 7.0276 -4.6936 2.7957 20 6 4.6819 -4.7156 3.1074 21 6 3.1351 -3.6298 -1.0177 22 6 2.4086 -4.0760 -2.2602 23 6 1.8520 -3.2670 -3.1795 24 6 1.2813 -4.1015 -4.1679 25 6 1.5240 -5.3706 -3.7938 26 8 2.2123 -5.3491 -2.6408 27 1 -0.4850 0.8400 0.0004 28 1 0.6909 -2.5953 -0.9307 29 1 0.5609 -2.5202 0.8429 30 1 3.3890 -2.5761 1.5046 31 1 3.6957 -4.3268 1.4089 32 1 1.0638 -3.1905 2.6043 33 1 1.4639 -4.9808 4.1663 34 1 2.7001 -7.3113 4.0284 35 1 4.8774 -8.4541 4.0294 36 1 6.9223 -7.2170 3.4478 37 1 4.6293 -3.6681 2.8496 38 1 3.5372 -2.6284 -1.1719 39 1 3.9514 -4.3205 -0.8062 40 1 1.8419 -2.1872 -3.1647 41 1 0.7523 -3.7814 -5.0533 42 1 1.2210 -6.2566 -4.3320 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308649252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:54 Heat of formation + Delta-G solvation = 10.629212 kcal Electronic energy + Delta-G solvation = -25692.134259 eV Core-core repulsion = 21939.526629 eV Total energy + Delta-G solvation = -3752.607629 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.87898 -43.34577 -40.33139 -38.72836 -35.55215 -34.51836 -33.74799 -31.70146 -31.52498 -30.41796 -29.03653 -27.21150 -26.01029 -24.08200 -23.42171 -22.54288 -22.41090 -21.09438 -20.24655 -18.80210 -17.91581 -17.80930 -17.41864 -17.12908 -16.92551 -16.74912 -16.61271 -16.12133 -15.92338 -15.66024 -15.11125 -14.70969 -14.61893 -14.23658 -14.15274 -13.69623 -13.64335 -13.54258 -13.32060 -13.14523 -12.90661 -12.83437 -12.67487 -12.43782 -12.34242 -12.07969 -12.07060 -11.76747 -11.47021 -10.78351 -10.71091 -10.57781 -9.72450 -9.41219 -9.20601 -8.97542 -8.14933 -6.32740 -0.02281 0.26784 0.89744 1.34705 1.36601 1.43304 1.45249 1.80761 2.23090 2.36064 2.74915 3.11230 3.29527 3.48764 3.75056 3.90296 3.99493 4.06108 4.19374 4.23848 4.25606 4.30568 4.39336 4.44630 4.50307 4.67560 4.80690 4.86246 4.93344 5.02542 5.13315 5.14412 5.18368 5.21875 5.33248 5.35667 5.37611 5.46895 5.67120 5.69878 5.75739 5.86030 5.99807 6.01471 6.19044 6.36944 6.41329 6.86011 7.37637 8.87833 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.009466 B = 0.004683 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.394152 B = 5977.461491 C = 7605.636382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.021 3.979 3 Si 0.947 3.053 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.057 0.943 9 C 0.202 3.798 10 N -0.535 5.535 11 C 0.080 3.920 12 C -0.117 4.117 13 C -0.129 4.129 14 C -0.028 4.028 15 C -0.118 4.118 16 C -0.084 4.084 17 C -0.157 4.157 18 C 0.074 3.926 19 F -0.153 7.153 20 C -0.166 4.166 21 C 0.136 3.864 22 C -0.003 4.003 23 C -0.219 4.219 24 C -0.228 4.228 25 C -0.042 4.042 26 O -0.186 6.186 27 H 0.264 0.736 28 H 0.005 0.995 29 H 0.014 0.986 30 H 0.036 0.964 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.169 0.831 36 H 0.154 0.846 37 H 0.125 0.875 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.126 0.874 41 H 0.165 0.835 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.837 -15.693 3.655 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.179 4.179 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.589 4.589 8 H 0.075 0.925 9 C 0.076 3.924 10 N -0.259 5.259 11 C -0.047 4.047 12 C -0.136 4.136 13 C -0.148 4.148 14 C -0.029 4.029 15 C -0.136 4.136 16 C -0.102 4.102 17 C -0.175 4.175 18 C 0.055 3.945 19 F -0.132 7.132 20 C -0.185 4.185 21 C 0.008 3.992 22 C -0.053 4.053 23 C -0.239 4.239 24 C -0.247 4.247 25 C -0.109 4.109 26 O -0.082 6.082 27 H 0.073 0.927 28 H 0.023 0.977 29 H 0.032 0.968 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.165 0.835 34 H 0.172 0.828 35 H 0.186 0.814 36 H 0.172 0.828 37 H 0.143 0.857 38 H 0.083 0.917 39 H 0.105 0.895 40 H 0.144 0.856 41 H 0.183 0.817 42 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 7.577 -16.235 3.801 18.315 hybrid contribution 0.464 2.847 -0.431 2.917 sum 8.040 -13.388 3.371 15.977 Atomic orbital electron populations 1.70057 1.07411 1.27636 1.51035 1.25647 0.95409 1.02232 0.94648 0.85729 0.78848 0.79896 0.78295 1.20145 1.20819 1.19322 1.21871 0.93173 0.92755 1.51138 0.92527 1.19432 0.91285 0.86014 0.95696 1.62509 1.17122 1.45469 1.00764 1.21541 0.95222 0.99932 0.87986 1.23197 0.99499 0.96404 0.94480 1.21716 0.95544 0.96547 1.00975 1.18991 0.92089 0.94387 0.97388 1.21657 0.99638 0.92832 0.99510 1.21335 0.90516 1.01454 0.96858 1.21476 1.01849 0.91774 1.02449 1.17869 0.81695 0.91893 1.02997 1.91466 1.50139 1.80782 1.90775 1.21513 0.91720 1.01388 1.03865 1.20347 0.92927 0.99877 0.86011 1.22309 1.04103 0.80948 0.97938 1.21724 1.04488 1.00447 0.97237 1.22078 1.06862 0.93161 1.02630 1.24780 0.98594 1.00660 0.86833 1.83981 1.59093 1.29061 1.36073 0.92738 0.97701 0.96798 0.94614 0.89154 0.87994 0.83471 0.82846 0.81380 0.82783 0.85748 0.91742 0.89460 0.85566 0.81718 0.73889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.10 13.29 21.44 0.28 -53.81 16 2 C 0.02 1.13 5.46 84.65 0.46 1.60 16 3 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 4 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.55 -29.63 7.34 25.60 0.19 -29.44 16 8 H 0.06 2.99 5.95 -2.91 -0.02 2.98 16 9 C 0.20 10.47 4.79 85.56 0.41 10.88 16 10 N -0.54 -23.24 4.65 -909.93 -4.23 -27.47 16 11 C 0.08 3.06 3.49 85.56 0.30 3.36 16 12 C -0.12 -4.17 9.16 24.54 0.22 -3.95 16 13 C -0.13 -3.62 9.80 23.66 0.23 -3.38 16 14 C -0.03 -0.73 5.22 -20.12 -0.10 -0.84 16 15 C -0.12 -2.31 9.78 22.52 0.22 -2.09 16 16 C -0.08 -1.36 10.03 22.22 0.22 -1.14 16 17 C -0.16 -3.06 10.02 22.36 0.22 -2.84 16 18 C 0.07 1.94 7.29 22.34 0.16 2.10 16 19 F -0.15 -4.34 17.26 44.97 0.78 -3.57 16 20 C -0.17 -4.69 7.27 22.56 0.16 -4.53 16 21 C 0.14 5.49 5.34 85.55 0.46 5.95 16 22 C 0.00 -0.10 6.27 24.83 0.16 0.05 16 23 C -0.22 -8.82 9.86 22.19 0.22 -8.60 16 24 C -0.23 -7.36 10.91 22.19 0.24 -7.12 16 25 C -0.04 -1.19 12.09 66.97 0.81 -0.38 16 26 O -0.19 -6.68 10.65 -2.51 -0.03 -6.71 16 27 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 28 H 0.00 0.28 6.73 -2.39 -0.02 0.26 16 29 H 0.01 0.78 6.50 -2.39 -0.02 0.77 16 30 H 0.04 1.53 6.41 -2.38 -0.02 1.51 16 31 H 0.09 3.16 4.44 -2.39 -0.01 3.15 16 32 H 0.10 4.06 6.83 -2.91 -0.02 4.04 16 33 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 34 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 35 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 36 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.12 3.87 6.12 -2.91 -0.02 3.85 16 38 H 0.06 2.78 6.15 -2.39 -0.01 2.77 16 39 H 0.09 3.10 7.81 -2.39 -0.02 3.08 16 40 H 0.13 5.56 8.06 -2.91 -0.02 5.54 16 41 H 0.17 4.33 8.06 -2.91 -0.02 4.30 16 42 H 0.25 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -66.55 352.47 4.46 -62.09 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 1.04 Total: 24.24 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 4.59 Total: -40.36 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -3.94 Total: -81.29 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.03 Total: -6.71 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.78 Total: -3.57 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -66.55 4.46 -62.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308649252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.721 kcal (2) G-P(sol) polarization free energy of solvation -66.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds