Wall clock time and date at job start Tue Mar 31 2020 10:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00111 * 2 1 4 4 H 1.48494 * 109.47153 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46710 * 299.99799 * 3 2 1 6 6 H 1.48500 * 109.47476 * 59.99499 * 3 2 1 7 7 C 1.37874 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99777 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00253 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46968 * 184.73567 * 9 7 2 11 11 C 1.46898 * 110.99945 * 63.11466 * 10 9 7 12 12 C 1.50697 * 109.46978 * 66.04690 * 11 10 9 13 13 C 1.32571 * 119.99671 * 125.00325 * 12 11 10 14 14 C 1.47823 * 119.99721 * 179.97438 * 13 12 11 15 15 C 1.39561 * 120.12891 * 0.24560 * 14 13 12 16 16 C 1.37957 * 119.90824 * 180.25543 * 15 14 13 17 17 C 1.38331 * 120.16865 * 359.74414 * 16 15 14 18 18 C 1.38546 * 120.25766 * 0.02562 * 17 16 15 19 19 F 1.35096 * 119.94985 * 179.97438 * 18 17 16 20 20 C 1.38216 * 120.08897 * 0.02562 * 18 17 16 21 21 C 1.46899 * 111.00017 * 299.15728 * 10 9 7 22 22 C 1.50701 * 109.46991 * 287.60493 * 21 10 9 23 23 C 1.34519 * 125.79058 * 93.76135 * 22 21 10 24 24 C 1.41374 * 106.84070 * 179.88557 * 23 22 21 25 25 C 1.34505 * 106.84481 * 0.37319 * 24 23 22 26 26 O 1.34302 * 125.79249 * 274.06564 * 22 21 10 27 27 H 0.97001 * 119.99826 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47059 * 64.73431 * 9 7 2 29 29 H 1.09001 * 109.46968 * 304.73103 * 9 7 2 30 30 H 1.08992 * 109.47115 * 306.03856 * 11 10 9 31 31 H 1.09004 * 109.46577 * 186.04466 * 11 10 9 32 32 H 1.07994 * 120.00133 * 304.98938 * 12 11 10 33 33 H 1.07992 * 120.00489 * 359.97438 * 13 12 11 34 34 H 1.08008 * 120.04852 * 0.02562 * 15 14 13 35 35 H 1.07998 * 119.91595 * 179.73053 * 16 15 14 36 36 H 1.07996 * 119.86872 * 179.97438 * 17 16 15 37 37 H 1.08009 * 120.08279 * 179.97438 * 20 18 17 38 38 H 1.08996 * 109.46990 * 47.60675 * 21 10 9 39 39 H 1.09001 * 109.46848 * 167.60870 * 21 10 9 40 40 H 1.08007 * 126.57424 * 0.02562 * 23 22 21 41 41 H 1.08003 * 126.57969 * 180.16130 * 24 23 22 42 42 H 1.08001 * 125.79483 * 179.74700 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2016 -3.6132 0.1164 11 6 2.9260 -3.5578 1.3932 12 6 1.9622 -3.7905 2.5280 13 6 2.1940 -4.7555 3.4071 14 6 1.2489 -4.9834 4.5206 15 6 0.1092 -4.1877 4.6462 16 6 -0.7670 -4.4010 5.6902 17 6 -0.5215 -5.4048 6.6097 18 6 0.6052 -6.2019 6.4890 19 9 0.8391 -7.1802 7.3909 20 6 1.4907 -5.9969 5.4478 21 6 3.1346 -3.6281 -1.0181 22 6 2.4097 -4.0827 -2.2587 23 6 1.8323 -3.2804 -3.1710 24 6 1.2752 -4.1211 -4.1617 25 6 1.5382 -5.3871 -3.7914 26 8 2.2257 -5.3579 -2.6380 27 1 -0.4850 0.8401 0.0004 28 1 0.6891 -2.5951 -0.9273 29 1 0.5626 -2.5205 0.8466 30 1 3.3899 -2.5779 1.5054 31 1 3.6968 -4.3284 1.4072 32 1 1.0829 -3.1711 2.6254 33 1 3.0732 -5.3750 3.3097 34 1 -0.0846 -3.4037 3.9291 35 1 -1.6467 -3.7825 5.7899 36 1 -1.2105 -5.5673 7.4254 37 1 2.3693 -6.6181 5.3540 38 1 3.5308 -2.6251 -1.1758 39 1 3.9549 -4.3135 -0.8049 40 1 1.8023 -2.2009 -3.1515 41 1 0.7381 -3.8071 -5.0445 42 1 1.2459 -6.2765 -4.3300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001308649253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:57 Heat of formation + Delta-G solvation = 16.225495 kcal Electronic energy + Delta-G solvation = -24883.652727 eV Core-core repulsion = 21131.287771 eV Total energy + Delta-G solvation = -3752.364956 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.89139 -41.97001 -39.01641 -37.28210 -34.13358 -32.58446 -32.37692 -30.96442 -30.34488 -29.15695 -27.11645 -25.69685 -24.15621 -22.91905 -22.45622 -21.16683 -20.80757 -19.61883 -18.98424 -17.34931 -17.00739 -16.31785 -16.16138 -15.95532 -15.65690 -15.58189 -15.03398 -14.74334 -14.22267 -14.18557 -13.82362 -13.49982 -13.27859 -12.86473 -12.54048 -12.40163 -12.28795 -12.24339 -12.07751 -11.88263 -11.47709 -11.19674 -11.04670 -10.98885 -10.74374 -10.60612 -10.35165 -10.11269 -9.94182 -9.72038 -9.34209 -8.79925 -8.52337 -8.07506 -7.86709 -7.31958 -6.12861 -4.22608 0.93970 1.24456 2.25694 2.68399 3.18964 3.19471 3.28971 3.30359 3.55919 3.86074 4.23243 4.31503 4.71112 4.83874 5.00880 5.10816 5.18364 5.23554 5.31217 5.37077 5.42572 5.56363 5.65059 5.77508 5.82097 5.91332 5.99376 6.11856 6.15851 6.21120 6.31086 6.35658 6.44396 6.46935 6.58002 6.64699 6.89632 7.00439 7.02251 7.08811 7.17864 7.43615 7.69660 7.80145 7.89094 8.07463 8.15397 8.86576 9.44552 10.92129 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.003571 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.975418 B = 7839.817278 C = 9756.213435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.070 3.930 3 Si 0.885 3.115 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.553 4.553 8 H 0.058 0.942 9 C 0.180 3.820 10 N -0.535 5.535 11 C 0.082 3.918 12 C -0.071 4.071 13 C -0.164 4.164 14 C -0.002 4.002 15 C -0.130 4.130 16 C -0.085 4.085 17 C -0.169 4.169 18 C 0.096 3.904 19 F -0.145 7.145 20 C -0.156 4.156 21 C 0.133 3.867 22 C 0.018 3.982 23 C -0.199 4.199 24 C -0.214 4.214 25 C -0.062 4.062 26 O -0.177 6.177 27 H 0.262 0.738 28 H 0.036 0.964 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.150 0.850 41 H 0.140 0.860 42 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.279 -9.645 4.377 10.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.133 4.133 3 Si 0.712 3.288 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.592 4.592 8 H 0.076 0.924 9 C 0.055 3.945 10 N -0.259 5.259 11 C -0.045 4.045 12 C -0.089 4.089 13 C -0.183 4.183 14 C -0.002 4.002 15 C -0.148 4.148 16 C -0.103 4.103 17 C -0.188 4.188 18 C 0.077 3.923 19 F -0.124 7.124 20 C -0.175 4.175 21 C 0.005 3.995 22 C -0.033 4.033 23 C -0.219 4.219 24 C -0.233 4.233 25 C -0.130 4.130 26 O -0.073 6.073 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.167 0.833 41 H 0.158 0.842 42 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.971 -10.255 4.567 11.397 hybrid contribution 0.564 1.768 -0.050 1.857 sum 2.535 -8.486 4.516 9.942 Atomic orbital electron populations 1.69947 1.05981 1.26809 1.49613 1.24903 0.94692 0.98982 0.94757 0.86657 0.80175 0.84147 0.77772 1.19798 1.20927 1.20921 1.21686 0.93170 0.91991 1.52326 0.92412 1.19892 0.91058 0.85014 0.98516 1.62577 1.16586 1.47619 0.99121 1.21072 0.94203 1.00734 0.88491 1.23564 0.98296 0.94404 0.92679 1.21418 0.99754 1.01037 0.96123 1.18940 0.94124 0.93358 0.93764 1.21550 0.94130 1.00293 0.98787 1.20952 0.99252 0.96564 0.93577 1.21103 0.97708 0.97930 1.02045 1.17598 0.96519 0.88838 0.89382 1.91473 1.94554 1.60389 1.65996 1.21173 1.00546 1.00630 0.95153 1.20422 0.92666 1.00221 0.86172 1.22429 1.02835 0.80188 0.97801 1.21684 1.03282 1.01168 0.95755 1.21787 1.06259 0.93095 1.02167 1.23800 1.01413 0.99350 0.88435 1.83987 1.58699 1.29843 1.34735 0.92773 0.94581 0.94517 0.91793 0.91973 0.86126 0.86504 0.84562 0.85022 0.85216 0.84877 0.89985 0.91283 0.83258 0.84210 0.78975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.45 13.29 55.43 0.74 -23.71 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.88 20.15 29.54 -169.99 -5.02 15.13 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.55 -13.74 7.33 -34.44 -0.25 -14.00 16 8 H 0.06 1.41 5.95 -52.49 -0.31 1.10 16 9 C 0.18 4.27 4.80 -4.98 -0.02 4.24 16 10 N -0.54 -10.62 4.64 -238.97 -1.11 -11.73 16 11 C 0.08 1.42 5.23 -4.98 -0.03 1.40 16 12 C -0.07 -1.18 8.61 -36.22 -0.31 -1.49 16 13 C -0.16 -2.37 9.52 -37.57 -0.36 -2.72 16 14 C 0.00 -0.02 5.87 -105.02 -0.62 -0.64 16 15 C -0.13 -1.79 9.40 -39.19 -0.37 -2.16 16 16 C -0.09 -1.03 10.03 -39.65 -0.40 -1.42 16 17 C -0.17 -2.00 10.02 -39.43 -0.40 -2.39 16 18 C 0.10 1.24 7.29 -39.48 -0.29 0.95 16 19 F -0.15 -1.90 17.26 2.25 0.04 -1.86 16 20 C -0.16 -2.03 9.76 -39.13 -0.38 -2.41 16 21 C 0.13 2.44 5.34 -4.98 -0.03 2.41 16 22 C 0.02 0.34 6.31 -35.62 -0.22 0.12 16 23 C -0.20 -3.76 9.81 -39.70 -0.39 -4.15 16 24 C -0.21 -3.46 10.91 -39.71 -0.43 -3.89 16 25 C -0.06 -0.93 12.09 29.41 0.36 -0.58 16 26 O -0.18 -3.16 10.65 5.71 0.06 -3.10 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.04 0.95 6.71 -51.93 -0.35 0.60 16 29 H 0.04 0.93 6.52 -51.93 -0.34 0.59 16 30 H 0.06 1.19 6.60 -51.93 -0.34 0.85 16 31 H 0.06 0.93 7.53 -51.93 -0.39 0.54 16 32 H 0.12 2.17 4.87 -52.49 -0.26 1.92 16 33 H 0.12 1.48 7.87 -52.49 -0.41 1.07 16 34 H 0.14 1.94 6.17 -52.48 -0.32 1.61 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 38 H 0.08 1.58 6.14 -51.93 -0.32 1.26 16 39 H 0.07 1.10 7.80 -51.93 -0.41 0.69 16 40 H 0.15 2.98 8.06 -52.48 -0.42 2.55 16 41 H 0.14 1.90 8.06 -52.48 -0.42 1.48 16 42 H 0.19 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 357.28 15.07 5.38 5.38 Total: -1.00 -28.32 357.28 -9.27 -37.59 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.12 Total: 7.32 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: -4.23 Total: -25.01 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: -0.37 Total: -35.45 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: 0.06 Total: -3.10 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.32 -9.27 -37.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308649253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.813 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds