Wall clock time and date at job start Tue Mar 31 2020 10:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39630 * 120.14770 * 260.27870 * 3 2 1 5 5 C 1.37951 * 119.84583 * 179.72112 * 4 3 2 6 6 C 1.38364 * 120.14902 * 0.53319 * 5 4 3 7 7 C 1.50696 * 119.84921 * 179.74007 * 6 5 4 8 8 N 1.46504 * 109.47223 * 270.02408 * 7 6 5 9 9 C 1.34771 * 119.99615 * 179.97438 * 8 7 6 10 10 O 1.21349 * 120.00429 * 0.02562 * 9 8 7 11 11 C 1.49458 * 119.99585 * 179.97438 * 9 8 7 12 12 O 1.21349 * 119.99985 * 0.02562 * 11 9 8 13 13 N 1.34783 * 119.99929 * 180.02562 * 11 9 8 14 14 C 1.46494 * 120.00091 * 180.02562 * 13 11 9 15 15 C 1.52997 * 109.47483 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47363 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.46859 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00367 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99782 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99807 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99878 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47127 * 90.00209 * 21 19 17 23 23 H 1.48499 * 109.47120 * 210.00102 * 21 19 17 24 24 H 1.48500 * 109.47340 * 329.99970 * 21 19 17 25 25 C 1.38366 * 120.30555 * 359.76678 * 6 5 4 26 26 C 1.37947 * 120.14940 * 359.95280 * 25 6 5 27 27 H 1.07999 * 120.08232 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.92831 * 180.25347 * 5 4 3 29 29 H 1.09004 * 109.46695 * 30.02569 * 7 6 5 30 30 H 1.08997 * 109.47414 * 150.02246 * 7 6 5 31 31 H 0.96995 * 120.00124 * 0.02562 * 8 7 6 32 32 H 0.97003 * 119.99536 * 0.02562 * 13 11 9 33 33 H 1.09007 * 109.47099 * 300.00493 * 14 13 11 34 34 H 1.08997 * 109.46995 * 59.99854 * 14 13 11 35 35 H 1.09004 * 109.46593 * 300.00173 * 15 14 13 36 36 H 1.09001 * 109.47305 * 59.99286 * 15 14 13 37 37 H 1.08991 * 109.47106 * 299.99772 * 16 15 14 38 38 H 1.09005 * 109.46936 * 59.99835 * 16 15 14 39 39 H 0.96998 * 119.99493 * 179.97438 * 20 19 17 40 40 H 1.07993 * 119.92703 * 179.97438 * 25 6 5 41 41 H 1.08003 * 120.07687 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.2048 1.1901 5 6 4.6486 0.1985 1.1839 6 6 5.3374 0.0014 0.0002 7 6 6.8443 0.0016 0.0002 8 7 7.3325 1.3642 -0.2261 9 6 8.6576 1.6073 -0.2659 10 8 9.4462 0.6975 -0.1147 11 6 9.1556 2.9973 -0.4974 12 8 8.3669 3.9070 -0.6491 13 7 10.4807 3.2404 -0.5377 14 6 10.9689 4.6029 -0.7640 15 6 12.4989 4.6030 -0.7646 16 6 13.0087 6.0262 -1.0004 17 6 14.5157 6.0263 -1.0003 18 1 15.0558 5.1035 -0.8478 19 6 15.2050 7.2043 -1.1960 20 7 14.5473 8.3278 -1.3822 21 14 17.0730 7.2043 -1.1966 22 1 17.5676 6.9752 -2.5780 23 1 17.5682 8.5150 -0.7046 24 1 17.5684 6.1228 -0.3077 25 6 4.6489 -0.1954 -1.1838 26 6 3.2694 -0.1972 -1.1910 27 1 2.7328 0.3633 2.1140 28 1 5.1923 0.3522 2.1044 29 1 7.2076 -0.3594 0.9625 30 1 7.2078 -0.6511 -0.7934 31 1 6.7022 2.0915 -0.3466 32 1 11.1111 2.5131 -0.4168 33 1 10.6055 4.9639 -1.7263 34 1 10.6055 5.2556 0.0296 35 1 12.8625 4.2418 0.1974 36 1 12.8620 3.9503 -1.5585 37 1 12.6451 6.3877 -1.9621 38 1 12.6456 6.6784 -0.2061 39 1 15.0323 9.1566 -1.5195 40 1 5.1926 -0.3482 -2.1042 41 1 2.7332 -0.3513 -2.1158 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322410284.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:24 Heat of formation + Delta-G solvation = -31.459531 kcal Electronic energy + Delta-G solvation = -23311.427760 eV Core-core repulsion = 19576.914987 eV Total energy + Delta-G solvation = -3734.512773 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.82832 -40.10994 -38.57029 -37.11940 -35.91514 -35.20554 -33.36719 -32.21642 -31.78231 -31.27521 -28.02977 -26.96747 -24.56413 -23.46838 -23.01003 -22.21601 -20.82123 -20.27939 -19.56388 -18.60387 -17.03694 -16.54846 -16.42702 -16.21411 -15.93676 -15.55683 -15.19305 -14.89280 -14.83052 -14.55161 -14.45614 -14.21779 -13.86289 -13.79538 -13.43791 -13.38986 -12.84918 -12.84660 -12.33006 -12.09401 -11.91825 -11.82861 -11.77397 -11.73786 -10.92872 -10.78751 -10.62198 -9.93277 -9.92689 -9.71910 -9.62388 -9.56572 -9.35488 -9.15022 -9.02445 -8.39592 -6.04409 -4.07465 0.00963 0.66584 1.34155 2.10637 2.12280 2.50934 3.15389 3.23281 3.27370 3.29921 3.36497 3.39410 3.66979 3.95011 4.12555 4.21857 4.41531 4.45796 4.62895 4.64994 4.98737 4.98748 5.17393 5.31345 5.31712 5.48225 5.55962 5.62170 5.65992 5.80341 5.82242 6.05005 6.10085 6.22496 6.51173 6.64448 6.81884 6.92608 6.92656 7.32633 7.59688 7.63181 7.71153 7.93733 7.99363 8.35000 8.99033 9.57035 11.06815 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.038805 B = 0.001617 C = 0.001580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.374172 B =17313.785101 C =17711.859170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.252 3.748 3 C -0.021 4.021 4 C -0.071 4.071 5 C -0.098 4.098 6 C -0.081 4.081 7 C 0.155 3.845 8 N -0.702 5.702 9 C 0.510 3.490 10 O -0.518 6.518 11 C 0.500 3.500 12 O -0.525 6.525 13 N -0.691 5.691 14 C 0.113 3.887 15 C -0.123 4.123 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.056 0.944 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.098 4.098 26 C -0.071 4.071 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.415 0.585 32 H 0.411 0.589 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.139 0.861 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.399 -19.798 3.292 29.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.064 4.064 3 C -0.024 4.024 4 C -0.091 4.091 5 C -0.116 4.116 6 C -0.082 4.082 7 C 0.032 3.968 8 N -0.357 5.357 9 C 0.291 3.709 10 O -0.393 6.393 11 C 0.280 3.720 12 O -0.402 6.402 13 N -0.342 5.342 14 C -0.009 4.009 15 C -0.161 4.161 16 C -0.014 4.014 17 C -0.562 4.562 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.116 4.116 26 C -0.091 4.091 27 H 0.154 0.846 28 H 0.156 0.844 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.252 0.748 32 H 0.247 0.753 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.156 0.844 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.104 -19.601 3.264 30.474 hybrid contribution 1.406 0.112 -0.030 1.411 sum -21.698 -19.489 3.234 29.345 Atomic orbital electron populations 1.81290 1.12081 1.08342 1.07052 1.25718 0.92680 0.93966 0.94016 1.16078 0.84366 1.06525 0.95452 1.21220 0.94196 0.96822 0.96907 1.21105 0.93563 0.98627 0.98348 1.20114 0.95125 0.99203 0.93782 1.20366 0.88804 0.83823 1.03803 1.45776 1.06865 1.10866 1.72152 1.20377 0.83024 0.89720 0.77773 1.90776 1.55164 1.45809 1.47546 1.19963 0.84070 0.88574 0.79442 1.90771 1.55220 1.45500 1.48723 1.46077 1.05968 1.12872 1.69315 1.21856 0.96747 0.80291 1.01962 1.21931 0.90235 1.02557 1.01366 1.19033 0.95878 0.88953 0.97486 1.21201 0.91561 0.93950 1.49471 0.92563 1.25023 0.98526 0.95629 0.95222 1.69961 1.35491 0.98718 1.49086 0.86576 0.85660 0.77376 0.78274 1.20650 1.21210 1.19861 1.21103 0.93564 0.98793 0.98181 1.21219 0.94194 0.96874 0.96859 0.84573 0.84363 0.89514 0.89512 0.74795 0.75284 0.91053 0.91047 0.92410 0.92410 0.96192 0.96182 0.92917 0.84364 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.09 18.54 41.83 0.78 -3.31 16 2 C 0.25 1.81 15.33 -22.47 -0.34 1.47 16 3 C -0.02 -0.10 5.73 -106.93 -0.61 -0.71 16 4 C -0.07 -0.27 9.76 -39.17 -0.38 -0.65 16 5 C -0.10 -0.35 9.68 -39.64 -0.38 -0.74 16 6 C -0.08 -0.33 5.25 -104.53 -0.55 -0.88 16 7 C 0.15 0.83 5.79 -5.19 -0.03 0.80 16 8 N -0.70 -5.49 5.54 -61.91 -0.34 -5.84 16 9 C 0.51 5.73 7.89 -11.58 -0.09 5.64 16 10 O -0.52 -6.77 16.48 5.50 0.09 -6.68 16 11 C 0.50 6.79 7.89 -11.58 -0.09 6.70 16 12 O -0.53 -8.26 16.48 5.50 0.09 -8.17 16 13 N -0.69 -9.62 5.55 -60.73 -0.34 -9.96 16 14 C 0.11 1.85 5.67 -4.05 -0.02 1.83 16 15 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 16 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 17 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.10 -0.35 9.68 -39.64 -0.38 -0.74 16 26 C -0.07 -0.27 9.76 -39.17 -0.38 -0.65 16 27 H 0.14 0.34 8.06 -52.49 -0.42 -0.09 16 28 H 0.14 0.33 8.06 -52.49 -0.42 -0.10 16 29 H 0.09 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.09 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.42 3.02 7.94 -40.82 -0.32 2.69 16 32 H 0.41 5.18 7.95 -40.82 -0.32 4.86 16 33 H 0.07 1.21 8.14 -51.92 -0.42 0.78 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.14 0.33 8.06 -52.49 -0.42 -0.10 16 41 H 0.14 0.34 8.06 -52.48 -0.42 -0.09 16 LS Contribution 373.15 15.07 5.62 5.62 Total: -1.00 -33.40 373.15 -7.61 -41.01 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -5.26 Total: -0.20 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -3.96 Total: -3.07 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: 0.83 Total: -44.69 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.18 Total: -14.85 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.40 -7.61 -41.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322410284.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.551 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds