Wall clock time and date at job start Tue Mar 31 2020 10:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99705 * 2 1 4 4 H 1.48504 * 109.47102 * 239.99519 * 3 2 1 5 5 H 1.48501 * 109.47237 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47370 * 119.99659 * 3 2 1 7 7 C 1.37876 * 120.00483 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00235 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99683 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46961 * 179.97438 * 9 7 2 11 11 C 1.46496 * 120.00010 * 268.66132 * 10 9 7 12 12 C 1.50699 * 109.47524 * 270.00244 * 11 10 9 13 13 C 1.34518 * 125.79086 * 89.71616 * 12 11 10 14 14 C 1.41374 * 106.84020 * 179.89249 * 13 12 11 15 15 C 1.34513 * 106.84230 * 0.37235 * 14 13 12 16 16 O 1.34303 * 125.78697 * 270.02833 * 12 11 10 17 17 C 1.34772 * 119.99973 * 88.66307 * 10 9 7 18 18 O 1.21599 * 120.00329 * 173.76836 * 17 10 9 19 19 C 1.47427 * 119.99948 * 354.04663 * 17 10 9 20 20 C 1.41203 * 126.43830 * 351.93724 * 19 17 10 21 21 N 1.30294 * 108.02998 * 179.78268 * 20 19 17 22 22 N 1.40510 * 109.01648 * 0.37409 * 21 20 19 23 23 C 1.34019 * 108.16995 * 359.87063 * 22 21 20 24 24 C 1.51386 * 110.34327 * 179.71599 * 23 22 21 25 25 C 1.54571 * 104.14676 * 343.54863 * 24 23 22 26 26 C 1.47255 * 140.81367 * 179.97438 * 22 21 20 27 27 H 0.96994 * 120.00003 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.46762 * 60.00324 * 9 7 2 29 29 H 1.09000 * 109.47201 * 300.00260 * 9 7 2 30 30 H 1.09004 * 109.47306 * 30.00348 * 11 10 9 31 31 H 1.09009 * 109.46990 * 150.00006 * 11 10 9 32 32 H 1.08004 * 126.57402 * 0.02562 * 13 12 11 33 33 H 1.08001 * 126.58198 * 180.16290 * 14 13 12 34 34 H 1.08005 * 125.78848 * 179.75172 * 15 14 13 35 35 H 1.07997 * 125.98530 * 359.96654 * 20 19 17 36 36 H 1.09007 * 110.49455 * 102.21591 * 24 23 22 37 37 H 1.08997 * 110.50051 * 224.88153 * 24 23 22 38 38 H 1.08997 * 110.99492 * 266.92901 * 25 24 23 39 39 H 1.09003 * 111.02188 * 143.12322 * 25 24 23 40 40 H 1.08993 * 110.23219 * 316.06899 * 26 22 21 41 41 H 1.08999 * 110.22699 * 77.94123 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0047 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0017 10 7 2.2032 -3.6126 0.0015 11 6 2.6557 -4.1892 -1.2670 12 6 1.7314 -5.3099 -1.6676 13 6 0.6217 -5.1844 -2.4175 14 6 0.0668 -6.4782 -2.5475 15 6 0.8659 -7.3157 -1.8624 16 8 1.8726 -6.6025 -1.3315 17 6 2.6628 -4.1065 1.1682 18 8 3.3627 -5.1009 1.1739 19 6 2.3118 -3.4449 2.4380 20 6 1.6442 -2.2091 2.5833 21 7 1.5152 -1.9678 3.8572 22 7 2.0951 -3.0214 4.5838 23 6 2.5796 -3.9147 3.7101 24 6 3.2242 -5.0718 4.4432 25 6 3.4295 -4.5411 5.8803 26 6 2.3368 -3.4543 5.9704 27 1 -0.4850 0.8400 -0.0004 28 1 0.6242 -2.5575 -0.8881 29 1 0.6248 -2.5563 0.8919 30 1 2.6493 -3.4195 -2.0388 31 1 3.6676 -4.5772 -1.1493 32 1 0.2311 -4.2709 -2.8410 33 1 -0.8289 -6.7428 -3.0898 34 1 0.7222 -8.3809 -1.7568 35 1 1.2983 -1.5764 1.7794 36 1 2.5619 -5.9376 4.4470 37 1 4.1823 -5.3250 3.9893 38 1 4.4224 -4.1072 5.9983 39 1 3.2594 -5.3276 6.6156 40 1 2.6879 -2.6155 6.5713 41 1 1.4250 -3.8694 6.3999 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361692795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:48 Heat of formation + Delta-G solvation = 71.850006 kcal Electronic energy + Delta-G solvation = -26630.384338 eV Core-core repulsion = 22900.351403 eV Total energy + Delta-G solvation = -3730.032935 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.41468 -42.74527 -40.30401 -37.44152 -36.71724 -34.82666 -33.82032 -32.48527 -31.31092 -30.32981 -29.25144 -28.37765 -26.55108 -24.99987 -23.05503 -22.65286 -22.56580 -21.74998 -21.07940 -19.73402 -18.77918 -18.19165 -17.94191 -17.35505 -17.31276 -16.51739 -16.40323 -16.06665 -15.79740 -15.43099 -14.93256 -14.85509 -14.49896 -14.30923 -14.20693 -13.96779 -13.75894 -13.66182 -13.51833 -13.24142 -13.00554 -12.73488 -12.56621 -12.47597 -12.25316 -12.04223 -11.92579 -11.79473 -11.71514 -10.85946 -10.76183 -10.60137 -10.16224 -9.72832 -9.47140 -9.31616 -8.23396 -6.37492 0.58809 0.78835 1.30246 1.42521 1.45138 1.46808 1.51889 1.71460 2.17237 2.34906 2.53653 2.60344 3.06321 3.14164 3.54513 3.79658 3.87389 3.93426 4.00440 4.19398 4.21742 4.32197 4.42257 4.51880 4.59228 4.62764 4.74640 4.78838 4.82850 4.90482 4.95943 5.02649 5.07013 5.10750 5.21853 5.23833 5.63897 5.67165 5.72203 5.80159 5.89438 6.00313 6.29274 6.52612 6.75421 6.81504 7.27897 7.41011 8.79823 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008258 B = 0.006829 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3389.659776 B = 4099.452907 C = 6841.720906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.032 3.968 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.241 3.759 10 N -0.593 5.593 11 C 0.199 3.801 12 C -0.042 4.042 13 C -0.208 4.208 14 C -0.224 4.224 15 C -0.046 4.046 16 O -0.189 6.189 17 C 0.591 3.409 18 O -0.589 6.589 19 C -0.314 4.314 20 C 0.071 3.929 21 N -0.330 5.330 22 N -0.392 5.392 23 C 0.122 3.878 24 C -0.067 4.067 25 C -0.111 4.111 26 C 0.110 3.890 27 H 0.272 0.728 28 H 0.029 0.971 29 H 0.033 0.967 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.150 0.850 33 H 0.173 0.827 34 H 0.239 0.761 35 H 0.238 0.762 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.146 0.854 40 H 0.106 0.894 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.176 -11.716 6.331 13.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.170 4.170 3 Si 0.774 3.226 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.120 3.880 10 N -0.323 5.323 11 C 0.076 3.924 12 C -0.093 4.093 13 C -0.228 4.228 14 C -0.243 4.243 15 C -0.113 4.113 16 O -0.085 6.085 17 C 0.383 3.617 18 O -0.472 6.472 19 C -0.328 4.328 20 C -0.114 4.114 21 N -0.149 5.149 22 N -0.171 5.171 23 C -0.014 4.014 24 C -0.106 4.106 25 C -0.149 4.149 26 C -0.008 4.008 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.139 0.861 31 H 0.104 0.896 32 H 0.167 0.833 33 H 0.190 0.810 34 H 0.255 0.745 35 H 0.253 0.747 36 H 0.129 0.871 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.164 0.836 40 H 0.124 0.876 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.066 -11.209 7.609 13.890 hybrid contribution 0.057 0.903 -1.169 1.478 sum 3.123 -10.306 6.441 12.548 Atomic orbital electron populations 1.69996 1.06957 1.28649 1.48931 1.25567 0.95522 1.01898 0.94054 0.85733 0.78673 0.79312 0.78879 1.19015 1.20421 1.20462 1.21535 0.93711 0.91025 1.51983 0.92344 1.19603 0.87627 0.82767 0.97971 1.47964 1.45457 1.34469 1.04387 1.19755 0.95378 0.90567 0.86731 1.23094 1.00925 0.83445 1.01826 1.21896 0.96681 1.00012 1.04229 1.22135 1.03784 0.92196 1.06152 1.24869 0.88254 0.99426 0.98790 1.84090 1.45106 1.18915 1.60404 1.17499 0.78567 0.82196 0.83467 1.90611 1.41646 1.27004 1.87952 1.19652 1.19425 1.01087 0.92675 1.26590 0.94129 0.95993 0.94641 1.77211 1.23057 1.09446 1.05192 1.50727 1.42461 1.15241 1.08646 1.23119 0.94406 0.93742 0.90175 1.21160 1.01933 0.93236 0.94242 1.22930 0.98620 0.97818 0.95499 1.22947 1.01839 0.99590 0.76464 0.91881 0.95299 0.94977 0.86079 0.89586 0.83271 0.80960 0.74502 0.74662 0.87126 0.88267 0.88453 0.83631 0.87604 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.97 13.29 21.45 0.28 -48.68 16 2 C 0.03 1.66 4.83 84.65 0.41 2.07 16 3 Si 0.95 41.85 29.54 68.60 2.03 43.88 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.54 -28.00 7.07 25.60 0.18 -27.82 16 8 H 0.06 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.24 11.90 4.65 85.64 0.40 12.30 16 10 N -0.59 -27.11 2.44 -834.39 -2.04 -29.15 16 11 C 0.20 7.86 5.88 85.63 0.50 8.36 16 12 C -0.04 -1.58 6.90 24.83 0.17 -1.41 16 13 C -0.21 -7.14 10.81 22.19 0.24 -6.90 16 14 C -0.22 -6.33 10.91 22.19 0.24 -6.09 16 15 C -0.05 -1.28 12.09 66.97 0.81 -0.47 16 16 O -0.19 -6.98 10.65 -2.51 -0.03 -7.01 16 17 C 0.59 28.05 7.64 86.66 0.66 28.71 16 18 O -0.59 -28.54 16.56 -4.03 -0.07 -28.61 16 19 C -0.31 -14.44 5.93 -20.13 -0.12 -14.56 16 20 C 0.07 3.48 9.33 85.65 0.80 4.28 16 21 N -0.33 -15.10 12.64 -56.42 -0.71 -15.81 16 22 N -0.39 -14.03 4.81 -328.34 -1.58 -15.61 16 23 C 0.12 4.54 7.31 42.44 0.31 4.85 16 24 C -0.07 -1.62 6.86 30.60 0.21 -1.41 16 25 C -0.11 -1.57 7.18 31.60 0.23 -1.34 16 26 C 0.11 2.26 7.78 86.70 0.67 2.93 16 27 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 28 H 0.03 1.47 8.06 -2.39 -0.02 1.45 16 29 H 0.03 1.73 4.93 -2.39 -0.01 1.72 16 30 H 0.12 4.39 8.07 -2.38 -0.02 4.38 16 31 H 0.09 3.37 7.52 -2.38 -0.02 3.35 16 32 H 0.15 4.95 8.06 -2.91 -0.02 4.93 16 33 H 0.17 3.70 8.06 -2.91 -0.02 3.68 16 34 H 0.24 4.10 8.06 -2.91 -0.02 4.08 16 35 H 0.24 12.57 2.77 -2.91 -0.01 12.56 16 36 H 0.11 2.36 8.14 -2.38 -0.02 2.34 16 37 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -73.01 346.91 4.67 -68.34 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: 1.06 Total: 29.15 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 5.72 Total: 3.50 kcal Atomic # 7 Polarization: -105.21 SS G_CDS: -4.04 Total: -109.25 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -0.09 Total: -35.62 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -73.01 4.67 -68.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361692795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.188 kcal (2) G-P(sol) polarization free energy of solvation -73.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds