Wall clock time and date at job start Tue Mar 31 2020 11:26:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50702 * 1
3 3 N 1.35837 * 126.45833 * 2 1
4 4 H 0.97008 * 124.91572 * 0.02885 * 3 2 1
5 5 N 1.28456 * 110.17133 * 180.02562 * 3 2 1
6 6 C 1.31940 * 110.20880 * 0.02562 * 5 3 2
7 7 C 1.47498 * 126.46094 * 179.97438 * 6 5 3
8 8 O 1.21607 * 119.99700 * 175.12963 * 7 6 5
9 9 N 1.34772 * 120.00236 * 355.13016 * 7 6 5
10 10 C 1.46505 * 119.99830 * 2.98820 * 9 7 6
11 11 C 1.50695 * 109.46982 * 83.57069 * 10 9 7
12 12 H 1.08004 * 120.00361 * 359.97438 * 11 10 9
13 13 C 1.37883 * 119.99955 * 179.97438 * 11 10 9
14 14 N 1.31517 * 119.99842 * 0.02562 * 13 11 10
15 15 Si 1.86806 * 120.00107 * 179.97438 * 13 11 10
16 16 H 1.48496 * 109.46763 * 60.00338 * 15 13 11
17 17 H 1.48495 * 109.46893 * 180.02562 * 15 13 11
18 18 H 1.48497 * 109.47261 * 300.00122 * 15 13 11
19 19 C 1.39857 * 120.00389 * 182.98509 * 9 7 6
20 20 C 1.38881 * 120.07332 * 172.01604 * 19 9 7
21 21 C 1.38112 * 119.92599 * 179.76924 * 20 19 9
22 22 C 1.38287 * 120.07178 * 0.51539 * 21 20 19
23 23 C 1.50693 * 119.92543 * 179.76202 * 22 21 20
24 24 C 1.38279 * 120.14299 * 359.74350 * 22 21 20
25 25 C 1.38112 * 120.07442 * 359.97438 * 24 22 21
26 26 C 1.35773 * 126.45710 * 179.69405 * 2 1 3
27 27 O 1.36087 * 127.27189 * 359.96947 * 26 2 1
28 28 H 1.08997 * 109.47158 * 90.02080 * 1 2 3
29 29 H 1.09002 * 109.47244 * 330.02082 * 1 2 3
30 30 H 1.09001 * 109.46814 * 210.02556 * 1 2 3
31 31 H 1.08999 * 109.46766 * 203.57042 * 10 9 7
32 32 H 1.08999 * 109.47052 * 323.57231 * 10 9 7
33 33 H 0.96999 * 120.00030 * 179.97438 * 14 13 11
34 34 H 1.08006 * 120.03758 * 0.03291 * 20 19 9
35 35 H 1.08004 * 119.96116 * 180.23339 * 21 20 19
36 36 H 1.09002 * 109.47143 * 269.97430 * 23 22 21
37 37 H 1.08996 * 109.47586 * 29.98461 * 23 22 21
38 38 H 1.09005 * 109.47056 * 149.97544 * 23 22 21
39 39 H 1.08003 * 119.96702 * 179.97438 * 24 22 21
40 40 H 1.08000 * 120.03554 * 180.02562 * 25 24 22
41 41 H 0.96700 * 113.99477 * 90.02471 * 27 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.3142 1.0925 0.0000
4 1 2.0044 2.0118 0.0004
5 7 3.5472 0.7323 -0.0005
6 6 3.6375 -0.5840 -0.0015
7 6 4.8809 -1.3774 -0.0028
8 8 4.8291 -2.5891 0.0858
9 7 6.0745 -0.7594 -0.1023
10 6 6.1407 0.7035 -0.1431
11 6 6.1042 1.2474 1.2618
12 1 6.0379 0.5710 2.1012
13 6 6.1556 2.6085 1.4757
14 7 6.2359 3.4322 0.4536
15 14 6.1096 3.2828 3.2172
16 1 7.2676 2.7554 3.9828
17 1 6.1769 4.7656 3.1758
18 1 4.8473 2.8633 3.8773
19 6 7.2498 -1.5147 -0.1665
20 6 8.4625 -0.8933 -0.4349
21 6 9.6221 -1.6414 -0.4929
22 6 9.5749 -3.0092 -0.2947
23 6 10.8413 -3.8229 -0.3640
24 6 8.3683 -3.6316 -0.0326
25 6 7.2059 -2.8885 0.0325
26 6 2.3138 -1.0920 0.0058
27 8 1.9325 -2.3984 0.0134
28 1 -0.3633 -0.0004 -1.0276
29 1 -0.3634 0.8902 0.5135
30 1 -0.3633 -0.8898 0.5142
31 1 7.0669 1.0119 -0.6282
32 1 5.2902 1.0902 -0.7046
33 1 6.2716 4.3898 0.6040
34 1 8.4995 0.1744 -0.5938
35 1 10.5660 -1.1582 -0.6978
36 1 11.0007 -4.1605 -1.3881
37 1 11.6852 -3.2096 -0.0480
38 1 10.7542 -4.6875 0.2941
39 1 8.3347 -4.7001 0.1213
40 1 6.2639 -3.3753 0.2376
41 1 1.8223 -2.7809 -0.8679
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001362099069.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:26:03
Heat of formation + Delta-G solvation = 49.643070 kcal
Electronic energy + Delta-G solvation = -26453.903073 eV
Core-core repulsion = 22722.907173 eV
Total energy + Delta-G solvation = -3730.995900 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 315.137 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-42.27298 -39.93542 -37.85115 -36.90207 -35.26886 -32.81505 -32.40485 -31.33502
-30.39618 -30.27761 -27.49275 -26.64277 -26.08611 -23.70990 -23.18650 -21.72407
-20.95403 -20.62471 -18.82579 -17.88936 -16.86122 -16.54554 -16.46677 -16.16576
-15.44312 -14.94729 -14.46341 -14.32744 -14.26908 -13.91547 -13.68466 -13.40797
-13.33116 -12.91456 -12.89104 -12.78614 -12.48681 -12.33500 -11.90328 -11.82356
-11.67208 -11.26322 -11.02913 -10.96443 -10.66506 -10.37552 -10.19019 -9.95501
-9.61331 -9.00199 -8.90391 -8.75825 -8.46112 -8.33360 -8.29284 -7.02549
-6.10129 -4.12388 1.71512 2.06257 2.14127 2.38950 3.11213 3.26009
3.29605 3.34886 3.67434 3.89550 4.35653 4.52466 4.58228 4.82975
4.98423 5.18983 5.24488 5.35641 5.39334 5.44925 5.60173 5.65285
5.76607 5.80376 5.84734 5.98072 6.02777 6.13219 6.28208 6.33960
6.41906 6.60092 6.87659 7.00294 7.05088 7.18427 7.25628 7.35057
7.50638 7.80756 7.91524 7.93717 8.12386 8.15564 8.32406 8.82578
8.91633 9.49873 10.97270
Molecular weight = 315.14amu
Principal moments of inertia in cm(-1)
A = 0.010066 B = 0.005871 C = 0.003981
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2780.937617 B = 4767.770772 C = 7032.263873
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C -0.031 4.031
3 N -0.379 5.379
4 H 0.447 0.553
5 N -0.162 5.162
6 C -0.036 4.036
7 C 0.603 3.397
8 O -0.531 6.531
9 N -0.524 5.524
10 C 0.220 3.780
11 C -0.511 4.511
12 H 0.054 0.946
13 C 0.072 3.928
14 N -0.891 5.891
15 Si 0.890 3.110
16 H -0.276 1.276
17 H -0.287 1.287
18 H -0.279 1.279
19 C 0.169 3.831
20 C -0.145 4.145
21 C -0.102 4.102
22 C -0.133 4.133
23 C -0.103 4.103
24 C -0.105 4.105
25 C -0.175 4.175
26 C 0.040 3.960
27 O -0.454 6.454
28 H 0.073 0.927
29 H 0.068 0.932
30 H 0.083 0.917
31 H 0.043 0.957
32 H 0.076 0.924
33 H 0.262 0.738
34 H 0.135 0.865
35 H 0.117 0.883
36 H 0.060 0.940
37 H 0.059 0.941
38 H 0.058 0.942
39 H 0.114 0.886
40 H 0.179 0.821
41 H 0.380 0.620
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.559 -6.567 -4.731 9.819
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.156 4.156
3 N -0.097 5.097
4 H 0.292 0.708
5 N 0.001 4.999
6 C -0.197 4.197
7 C 0.392 3.608
8 O -0.410 6.410
9 N -0.242 5.242
10 C 0.101 3.899
11 C -0.550 4.550
12 H 0.072 0.928
13 C -0.130 4.130
14 N -0.530 5.530
15 Si 0.717 3.283
16 H -0.202 1.202
17 H -0.212 1.212
18 H -0.205 1.205
19 C 0.073 3.927
20 C -0.166 4.166
21 C -0.121 4.121
22 C -0.134 4.134
23 C -0.160 4.160
24 C -0.124 4.124
25 C -0.194 4.194
26 C -0.015 4.015
27 O -0.258 6.258
28 H 0.092 0.908
29 H 0.087 0.913
30 H 0.102 0.898
31 H 0.061 0.939
32 H 0.093 0.907
33 H 0.072 0.928
34 H 0.153 0.847
35 H 0.135 0.865
36 H 0.079 0.921
37 H 0.078 0.922
38 H 0.077 0.923
39 H 0.132 0.868
40 H 0.195 0.805
41 H 0.233 0.767
Dipole moment (debyes) X Y Z Total
from point charges -4.987 -5.978 -4.111 8.804
hybrid contribution -0.532 0.526 0.652 0.992
sum -5.519 -5.452 -3.459 8.494
Atomic orbital electron populations
1.20225 0.86750 1.03723 1.02741 1.21441 0.95036 0.87906 1.11177
1.43542 1.03596 1.09043 1.53508 0.70808 1.74676 0.98824 1.13081
1.13281 1.22106 0.94331 0.90479 1.12824 1.16955 0.81868 0.85691
0.76283 1.90370 1.85895 1.13299 1.51406 1.45903 1.03102 1.10631
1.64562 1.20121 1.00095 0.70564 0.99090 1.21168 1.50536 0.91721
0.91569 0.92773 1.24741 0.95067 0.96531 0.96703 1.69913 1.50360
1.03048 1.29697 0.86695 0.78763 0.77628 0.85166 1.20174 1.21211
1.20487 1.18042 0.86247 0.90982 0.97452 1.21063 0.91095 1.00907
1.03507 1.20701 0.97399 0.93108 1.00851 1.19767 0.95143 0.94174
1.04312 1.20654 0.94959 0.99043 1.01359 1.20895 0.91872 0.99063
1.00542 1.22708 1.01742 0.92931 1.02043 1.17743 0.89161 0.84607
1.10030 1.84887 1.88924 1.19612 1.32392 0.90816 0.91275 0.89779
0.93926 0.90716 0.92821 0.84724 0.86543 0.92123 0.92241 0.92288
0.86778 0.80481 0.76684
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.71 10.44 36.01 0.38 -0.34 16
2 C -0.03 -0.44 7.27 -81.70 -0.59 -1.04 16
3 N -0.38 -5.96 6.87 33.71 0.23 -5.73 16
4 H 0.45 5.49 8.96 -190.44 -1.71 3.79 16
5 N -0.16 -3.33 8.01 33.45 0.27 -3.06 16
6 C -0.04 -0.76 6.80 -82.69 -0.56 -1.33 16
7 C 0.60 13.72 7.56 -12.49 -0.09 13.62 16
8 O -0.53 -12.15 12.94 3.32 0.04 -12.10 16
9 N -0.52 -12.15 2.70 -115.91 -0.31 -12.46 16
10 C 0.22 5.43 4.51 -5.19 -0.02 5.41 16
11 C -0.51 -13.69 8.38 -34.44 -0.29 -13.98 16
12 H 0.05 1.54 7.81 -52.48 -0.41 1.13 16
13 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16
14 N -0.89 -24.15 13.29 55.43 0.74 -23.42 16
15 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16
16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
19 C 0.17 3.69 6.49 -83.72 -0.54 3.15 16
20 C -0.15 -2.95 9.29 -39.39 -0.37 -3.31 16
21 C -0.10 -1.77 9.69 -39.61 -0.38 -2.15 16
22 C -0.13 -2.16 5.88 -104.59 -0.62 -2.78 16
23 C -0.10 -1.27 10.01 36.00 0.36 -0.91 16
24 C -0.11 -1.82 9.69 -39.61 -0.38 -2.21 16
25 C -0.17 -3.56 9.03 -39.39 -0.36 -3.92 16
26 C 0.04 0.71 7.28 -39.11 -0.28 0.42 16
27 O -0.45 -7.21 13.20 -21.97 -0.29 -7.50 16
28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16
31 H 0.04 1.09 5.67 -51.93 -0.29 0.79 16
32 H 0.08 1.89 5.38 -51.93 -0.28 1.61 16
33 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16
34 H 0.14 2.82 5.90 -52.48 -0.31 2.51 16
35 H 0.12 1.72 8.06 -52.48 -0.42 1.29 16
36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
37 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16
38 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16
39 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16
40 H 0.18 3.81 4.56 -56.10 -0.26 3.55 16
41 H 0.38 4.24 9.07 45.56 0.41 4.66 16
LS Contribution 346.15 15.07 5.22 5.22
Total: -1.00 -32.51 346.15 -8.34 -40.85
By element:
Atomic # 1 Polarization: 15.04 SS G_CDS: -5.35 Total: 9.68 kcal
Atomic # 6 Polarization: -3.69 SS G_CDS: -3.86 Total: -7.55 kcal
Atomic # 7 Polarization: -45.59 SS G_CDS: 0.92 Total: -44.67 kcal
Atomic # 8 Polarization: -19.35 SS G_CDS: -0.25 Total: -19.60 kcal
Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal
Total LS contribution 5.22 Total: 5.22 kcal
Total: -32.51 -8.34 -40.85 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001362099069.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 90.492 kcal
(2) G-P(sol) polarization free energy of solvation -32.509 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.982 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal
(6) G-S(sol) free energy of system = (1) + (5) 49.643 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds