Wall clock time and date at job start Tue Mar 31 2020 11:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.35837 * 126.45833 * 2 1 4 4 H 0.97008 * 124.91572 * 0.02885 * 3 2 1 5 5 N 1.28456 * 110.17133 * 180.02562 * 3 2 1 6 6 C 1.31940 * 110.20880 * 0.02562 * 5 3 2 7 7 C 1.47498 * 126.46094 * 179.97438 * 6 5 3 8 8 O 1.21607 * 119.99700 * 175.12963 * 7 6 5 9 9 N 1.34772 * 120.00236 * 355.13016 * 7 6 5 10 10 C 1.46505 * 119.99830 * 2.98820 * 9 7 6 11 11 C 1.50695 * 109.46982 * 83.57069 * 10 9 7 12 12 H 1.08004 * 120.00361 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99955 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99842 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00107 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46763 * 60.00338 * 15 13 11 17 17 H 1.48495 * 109.46893 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47261 * 300.00122 * 15 13 11 19 19 C 1.39857 * 120.00389 * 182.98509 * 9 7 6 20 20 C 1.38881 * 120.07332 * 172.01604 * 19 9 7 21 21 C 1.38112 * 119.92599 * 179.76924 * 20 19 9 22 22 C 1.38287 * 120.07178 * 0.51539 * 21 20 19 23 23 C 1.50693 * 119.92543 * 179.76202 * 22 21 20 24 24 C 1.38279 * 120.14299 * 359.74350 * 22 21 20 25 25 C 1.38112 * 120.07442 * 359.97438 * 24 22 21 26 26 C 1.35773 * 126.45710 * 179.69405 * 2 1 3 27 27 O 1.36087 * 127.27189 * 359.96947 * 26 2 1 28 28 H 1.08997 * 109.47158 * 90.02080 * 1 2 3 29 29 H 1.09002 * 109.47244 * 330.02082 * 1 2 3 30 30 H 1.09001 * 109.46814 * 210.02556 * 1 2 3 31 31 H 1.08999 * 109.46766 * 203.57042 * 10 9 7 32 32 H 1.08999 * 109.47052 * 323.57231 * 10 9 7 33 33 H 0.96999 * 120.00030 * 179.97438 * 14 13 11 34 34 H 1.08006 * 120.03758 * 0.03291 * 20 19 9 35 35 H 1.08004 * 119.96116 * 180.23339 * 21 20 19 36 36 H 1.09002 * 109.47143 * 269.97430 * 23 22 21 37 37 H 1.08996 * 109.47586 * 29.98461 * 23 22 21 38 38 H 1.09005 * 109.47056 * 149.97544 * 23 22 21 39 39 H 1.08003 * 119.96702 * 179.97438 * 24 22 21 40 40 H 1.08000 * 120.03554 * 180.02562 * 25 24 22 41 41 H 0.96700 * 113.99477 * 90.02471 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0044 2.0118 0.0004 5 7 3.5472 0.7323 -0.0005 6 6 3.6375 -0.5840 -0.0015 7 6 4.8809 -1.3774 -0.0028 8 8 4.8291 -2.5891 0.0858 9 7 6.0745 -0.7594 -0.1023 10 6 6.1407 0.7035 -0.1431 11 6 6.1042 1.2474 1.2618 12 1 6.0379 0.5710 2.1012 13 6 6.1556 2.6085 1.4757 14 7 6.2359 3.4322 0.4536 15 14 6.1096 3.2828 3.2172 16 1 7.2676 2.7554 3.9828 17 1 6.1769 4.7656 3.1758 18 1 4.8473 2.8633 3.8773 19 6 7.2498 -1.5147 -0.1665 20 6 8.4625 -0.8933 -0.4349 21 6 9.6221 -1.6414 -0.4929 22 6 9.5749 -3.0092 -0.2947 23 6 10.8413 -3.8229 -0.3640 24 6 8.3683 -3.6316 -0.0326 25 6 7.2059 -2.8885 0.0325 26 6 2.3138 -1.0920 0.0058 27 8 1.9325 -2.3984 0.0134 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3634 0.8902 0.5135 30 1 -0.3633 -0.8898 0.5142 31 1 7.0669 1.0119 -0.6282 32 1 5.2902 1.0902 -0.7046 33 1 6.2716 4.3898 0.6040 34 1 8.4995 0.1744 -0.5938 35 1 10.5660 -1.1582 -0.6978 36 1 11.0007 -4.1605 -1.3881 37 1 11.6852 -3.2096 -0.0480 38 1 10.7542 -4.6875 0.2941 39 1 8.3347 -4.7001 0.1213 40 1 6.2639 -3.3753 0.2376 41 1 1.8223 -2.7809 -0.8679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362099069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:03 Heat of formation + Delta-G solvation = 49.643070 kcal Electronic energy + Delta-G solvation = -26453.903073 eV Core-core repulsion = 22722.907173 eV Total energy + Delta-G solvation = -3730.995900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.27298 -39.93542 -37.85115 -36.90207 -35.26886 -32.81505 -32.40485 -31.33502 -30.39618 -30.27761 -27.49275 -26.64277 -26.08611 -23.70990 -23.18650 -21.72407 -20.95403 -20.62471 -18.82579 -17.88936 -16.86122 -16.54554 -16.46677 -16.16576 -15.44312 -14.94729 -14.46341 -14.32744 -14.26908 -13.91547 -13.68466 -13.40797 -13.33116 -12.91456 -12.89104 -12.78614 -12.48681 -12.33500 -11.90328 -11.82356 -11.67208 -11.26322 -11.02913 -10.96443 -10.66506 -10.37552 -10.19019 -9.95501 -9.61331 -9.00199 -8.90391 -8.75825 -8.46112 -8.33360 -8.29284 -7.02549 -6.10129 -4.12388 1.71512 2.06257 2.14127 2.38950 3.11213 3.26009 3.29605 3.34886 3.67434 3.89550 4.35653 4.52466 4.58228 4.82975 4.98423 5.18983 5.24488 5.35641 5.39334 5.44925 5.60173 5.65285 5.76607 5.80376 5.84734 5.98072 6.02777 6.13219 6.28208 6.33960 6.41906 6.60092 6.87659 7.00294 7.05088 7.18427 7.25628 7.35057 7.50638 7.80756 7.91524 7.93717 8.12386 8.15564 8.32406 8.82578 8.91633 9.49873 10.97270 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010066 B = 0.005871 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.937617 B = 4767.770772 C = 7032.263873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.031 4.031 3 N -0.379 5.379 4 H 0.447 0.553 5 N -0.162 5.162 6 C -0.036 4.036 7 C 0.603 3.397 8 O -0.531 6.531 9 N -0.524 5.524 10 C 0.220 3.780 11 C -0.511 4.511 12 H 0.054 0.946 13 C 0.072 3.928 14 N -0.891 5.891 15 Si 0.890 3.110 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.279 1.279 19 C 0.169 3.831 20 C -0.145 4.145 21 C -0.102 4.102 22 C -0.133 4.133 23 C -0.103 4.103 24 C -0.105 4.105 25 C -0.175 4.175 26 C 0.040 3.960 27 O -0.454 6.454 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.076 0.924 33 H 0.262 0.738 34 H 0.135 0.865 35 H 0.117 0.883 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.114 0.886 40 H 0.179 0.821 41 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.559 -6.567 -4.731 9.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.156 4.156 3 N -0.097 5.097 4 H 0.292 0.708 5 N 0.001 4.999 6 C -0.197 4.197 7 C 0.392 3.608 8 O -0.410 6.410 9 N -0.242 5.242 10 C 0.101 3.899 11 C -0.550 4.550 12 H 0.072 0.928 13 C -0.130 4.130 14 N -0.530 5.530 15 Si 0.717 3.283 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.205 1.205 19 C 0.073 3.927 20 C -0.166 4.166 21 C -0.121 4.121 22 C -0.134 4.134 23 C -0.160 4.160 24 C -0.124 4.124 25 C -0.194 4.194 26 C -0.015 4.015 27 O -0.258 6.258 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.153 0.847 35 H 0.135 0.865 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.132 0.868 40 H 0.195 0.805 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.987 -5.978 -4.111 8.804 hybrid contribution -0.532 0.526 0.652 0.992 sum -5.519 -5.452 -3.459 8.494 Atomic orbital electron populations 1.20225 0.86750 1.03723 1.02741 1.21441 0.95036 0.87906 1.11177 1.43542 1.03596 1.09043 1.53508 0.70808 1.74676 0.98824 1.13081 1.13281 1.22106 0.94331 0.90479 1.12824 1.16955 0.81868 0.85691 0.76283 1.90370 1.85895 1.13299 1.51406 1.45903 1.03102 1.10631 1.64562 1.20121 1.00095 0.70564 0.99090 1.21168 1.50536 0.91721 0.91569 0.92773 1.24741 0.95067 0.96531 0.96703 1.69913 1.50360 1.03048 1.29697 0.86695 0.78763 0.77628 0.85166 1.20174 1.21211 1.20487 1.18042 0.86247 0.90982 0.97452 1.21063 0.91095 1.00907 1.03507 1.20701 0.97399 0.93108 1.00851 1.19767 0.95143 0.94174 1.04312 1.20654 0.94959 0.99043 1.01359 1.20895 0.91872 0.99063 1.00542 1.22708 1.01742 0.92931 1.02043 1.17743 0.89161 0.84607 1.10030 1.84887 1.88924 1.19612 1.32392 0.90816 0.91275 0.89779 0.93926 0.90716 0.92821 0.84724 0.86543 0.92123 0.92241 0.92288 0.86778 0.80481 0.76684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.44 36.01 0.38 -0.34 16 2 C -0.03 -0.44 7.27 -81.70 -0.59 -1.04 16 3 N -0.38 -5.96 6.87 33.71 0.23 -5.73 16 4 H 0.45 5.49 8.96 -190.44 -1.71 3.79 16 5 N -0.16 -3.33 8.01 33.45 0.27 -3.06 16 6 C -0.04 -0.76 6.80 -82.69 -0.56 -1.33 16 7 C 0.60 13.72 7.56 -12.49 -0.09 13.62 16 8 O -0.53 -12.15 12.94 3.32 0.04 -12.10 16 9 N -0.52 -12.15 2.70 -115.91 -0.31 -12.46 16 10 C 0.22 5.43 4.51 -5.19 -0.02 5.41 16 11 C -0.51 -13.69 8.38 -34.44 -0.29 -13.98 16 12 H 0.05 1.54 7.81 -52.48 -0.41 1.13 16 13 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 14 N -0.89 -24.15 13.29 55.43 0.74 -23.42 16 15 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.17 3.69 6.49 -83.72 -0.54 3.15 16 20 C -0.15 -2.95 9.29 -39.39 -0.37 -3.31 16 21 C -0.10 -1.77 9.69 -39.61 -0.38 -2.15 16 22 C -0.13 -2.16 5.88 -104.59 -0.62 -2.78 16 23 C -0.10 -1.27 10.01 36.00 0.36 -0.91 16 24 C -0.11 -1.82 9.69 -39.61 -0.38 -2.21 16 25 C -0.17 -3.56 9.03 -39.39 -0.36 -3.92 16 26 C 0.04 0.71 7.28 -39.11 -0.28 0.42 16 27 O -0.45 -7.21 13.20 -21.97 -0.29 -7.50 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.04 1.09 5.67 -51.93 -0.29 0.79 16 32 H 0.08 1.89 5.38 -51.93 -0.28 1.61 16 33 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.14 2.82 5.90 -52.48 -0.31 2.51 16 35 H 0.12 1.72 8.06 -52.48 -0.42 1.29 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 39 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.18 3.81 4.56 -56.10 -0.26 3.55 16 41 H 0.38 4.24 9.07 45.56 0.41 4.66 16 LS Contribution 346.15 15.07 5.22 5.22 Total: -1.00 -32.51 346.15 -8.34 -40.85 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.35 Total: 9.68 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -3.86 Total: -7.55 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.92 Total: -44.67 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.25 Total: -19.60 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.51 -8.34 -40.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362099069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.492 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds