Wall clock time and date at job start Tue Mar 31 2020 11:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.35837 * 126.45833 * 2 1 4 4 H 0.97008 * 124.91572 * 0.02885 * 3 2 1 5 5 N 1.28456 * 110.17133 * 180.02562 * 3 2 1 6 6 C 1.31940 * 110.20880 * 0.02562 * 5 3 2 7 7 C 1.47498 * 126.46094 * 179.97438 * 6 5 3 8 8 O 1.21607 * 119.99700 * 175.12963 * 7 6 5 9 9 N 1.34772 * 120.00236 * 355.13016 * 7 6 5 10 10 C 1.46505 * 119.99830 * 2.98820 * 9 7 6 11 11 C 1.50695 * 109.46982 * 83.57069 * 10 9 7 12 12 H 1.08004 * 120.00361 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99955 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99842 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 120.00107 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46763 * 60.00338 * 15 13 11 17 17 H 1.48495 * 109.46893 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47261 * 300.00122 * 15 13 11 19 19 C 1.39857 * 120.00389 * 182.98509 * 9 7 6 20 20 C 1.38881 * 120.07332 * 172.01604 * 19 9 7 21 21 C 1.38112 * 119.92599 * 179.76924 * 20 19 9 22 22 C 1.38287 * 120.07178 * 0.51539 * 21 20 19 23 23 C 1.50693 * 119.92543 * 179.76202 * 22 21 20 24 24 C 1.38279 * 120.14299 * 359.74350 * 22 21 20 25 25 C 1.38112 * 120.07442 * 359.97438 * 24 22 21 26 26 C 1.35773 * 126.45710 * 179.69405 * 2 1 3 27 27 O 1.36087 * 127.27189 * 359.96947 * 26 2 1 28 28 H 1.08997 * 109.47158 * 90.02080 * 1 2 3 29 29 H 1.09002 * 109.47244 * 330.02082 * 1 2 3 30 30 H 1.09001 * 109.46814 * 210.02556 * 1 2 3 31 31 H 1.08999 * 109.46766 * 203.57042 * 10 9 7 32 32 H 1.08999 * 109.47052 * 323.57231 * 10 9 7 33 33 H 0.96999 * 120.00030 * 179.97438 * 14 13 11 34 34 H 1.08006 * 120.03758 * 0.03291 * 20 19 9 35 35 H 1.08004 * 119.96116 * 180.23339 * 21 20 19 36 36 H 1.09002 * 109.47143 * 269.97430 * 23 22 21 37 37 H 1.08996 * 109.47586 * 29.98461 * 23 22 21 38 38 H 1.09005 * 109.47056 * 149.97544 * 23 22 21 39 39 H 1.08003 * 119.96702 * 179.97438 * 24 22 21 40 40 H 1.08000 * 120.03554 * 180.02562 * 25 24 22 41 41 H 0.96700 * 113.99477 * 90.02471 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0044 2.0118 0.0004 5 7 3.5472 0.7323 -0.0005 6 6 3.6375 -0.5840 -0.0015 7 6 4.8809 -1.3774 -0.0028 8 8 4.8291 -2.5891 0.0858 9 7 6.0745 -0.7594 -0.1023 10 6 6.1407 0.7035 -0.1431 11 6 6.1042 1.2474 1.2618 12 1 6.0379 0.5710 2.1012 13 6 6.1556 2.6085 1.4757 14 7 6.2359 3.4322 0.4536 15 14 6.1096 3.2828 3.2172 16 1 7.2676 2.7554 3.9828 17 1 6.1769 4.7656 3.1758 18 1 4.8473 2.8633 3.8773 19 6 7.2498 -1.5147 -0.1665 20 6 8.4625 -0.8933 -0.4349 21 6 9.6221 -1.6414 -0.4929 22 6 9.5749 -3.0092 -0.2947 23 6 10.8413 -3.8229 -0.3640 24 6 8.3683 -3.6316 -0.0326 25 6 7.2059 -2.8885 0.0325 26 6 2.3138 -1.0920 0.0058 27 8 1.9325 -2.3984 0.0134 28 1 -0.3633 -0.0004 -1.0276 29 1 -0.3634 0.8902 0.5135 30 1 -0.3633 -0.8898 0.5142 31 1 7.0669 1.0119 -0.6282 32 1 5.2902 1.0902 -0.7046 33 1 6.2716 4.3898 0.6040 34 1 8.4995 0.1744 -0.5938 35 1 10.5660 -1.1582 -0.6978 36 1 11.0007 -4.1605 -1.3881 37 1 11.6852 -3.2096 -0.0480 38 1 10.7542 -4.6875 0.2941 39 1 8.3347 -4.7001 0.1213 40 1 6.2639 -3.3753 0.2376 41 1 1.8223 -2.7809 -0.8679 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362099069.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:02 Heat of formation + Delta-G solvation = 27.419340 kcal Electronic energy + Delta-G solvation = -26454.866767 eV Core-core repulsion = 22722.907173 eV Total energy + Delta-G solvation = -3731.959593 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.63193 -41.54884 -39.35896 -38.16553 -36.98415 -34.67337 -33.76406 -32.64180 -31.80355 -31.68845 -29.34911 -27.82195 -27.39472 -25.48008 -24.76687 -23.27950 -22.24481 -22.07749 -20.35627 -19.25860 -18.68652 -18.10137 -17.98203 -17.75095 -16.84912 -16.51246 -16.28614 -15.94372 -15.73529 -15.12458 -15.07019 -14.68656 -14.55016 -14.46628 -14.26975 -14.20582 -13.70780 -13.56618 -13.24089 -13.20162 -12.94192 -12.91744 -12.79305 -12.59211 -12.24580 -12.00766 -11.88783 -11.80576 -11.07615 -10.70397 -10.54541 -10.36647 -10.27600 -9.78041 -9.61975 -8.64124 -8.13498 -6.23998 0.17922 0.57163 0.84868 0.98705 1.34748 1.36760 1.44124 1.83563 2.14969 2.29284 2.41982 3.00944 3.15321 3.16935 3.69365 3.79465 3.96931 4.07369 4.12623 4.28301 4.41415 4.54453 4.58352 4.63250 4.79679 4.87877 4.91114 4.95185 5.01680 5.04206 5.19669 5.21754 5.30654 5.38808 5.47808 5.56517 5.71606 5.77723 5.86262 6.08316 6.17322 6.34065 6.41648 6.74595 6.84228 6.94944 7.18541 7.40738 8.91292 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010066 B = 0.005871 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.937617 B = 4767.770772 C = 7032.263873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.002 3.998 3 N -0.367 5.367 4 H 0.461 0.539 5 N -0.204 5.204 6 C -0.070 4.070 7 C 0.590 3.410 8 O -0.545 6.545 9 N -0.532 5.532 10 C 0.238 3.762 11 C -0.517 4.517 12 H 0.028 0.972 13 C 0.039 3.961 14 N -0.909 5.909 15 Si 0.942 3.058 16 H -0.280 1.280 17 H -0.273 1.273 18 H -0.280 1.280 19 C 0.131 3.869 20 C -0.163 4.163 21 C -0.101 4.101 22 C -0.122 4.122 23 C -0.101 4.101 24 C -0.104 4.104 25 C -0.191 4.191 26 C 0.019 3.981 27 O -0.461 6.461 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.027 0.973 32 H 0.070 0.930 33 H 0.266 0.734 34 H 0.117 0.883 35 H 0.146 0.854 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.145 0.855 40 H 0.164 0.836 41 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.765 -7.076 -4.549 10.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.124 4.124 3 N -0.087 5.087 4 H 0.309 0.691 5 N -0.042 5.042 6 C -0.229 4.229 7 C 0.381 3.619 8 O -0.424 6.424 9 N -0.251 5.251 10 C 0.118 3.882 11 C -0.556 4.556 12 H 0.046 0.954 13 C -0.161 4.161 14 N -0.549 5.549 15 Si 0.768 3.232 16 H -0.206 1.206 17 H -0.197 1.197 18 H -0.205 1.205 19 C 0.036 3.964 20 C -0.183 4.183 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.157 4.157 24 C -0.122 4.122 25 C -0.210 4.210 26 C -0.037 4.037 27 O -0.268 6.268 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.164 0.836 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.162 0.838 40 H 0.180 0.820 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -5.183 -6.487 -3.946 9.193 hybrid contribution -0.472 0.604 0.550 0.943 sum -5.655 -5.884 -3.395 8.839 Atomic orbital electron populations 1.20460 0.82491 1.05195 1.04949 1.22093 0.96986 0.86043 1.07299 1.43617 1.02680 1.10296 1.52110 0.69136 1.74509 1.01264 1.13213 1.15213 1.22173 0.94934 0.91081 1.14734 1.17377 0.82459 0.86024 0.76063 1.90342 1.86283 1.13599 1.52222 1.45869 1.04011 1.10019 1.65178 1.19744 0.98834 0.71775 0.97823 1.21119 1.51075 0.91790 0.91623 0.95364 1.25276 0.94622 0.96494 0.99756 1.69981 1.50522 1.03320 1.31052 0.85877 0.78306 0.77645 0.81323 1.20615 1.19735 1.20525 1.18406 0.86410 0.91840 0.99743 1.21090 0.91944 1.00426 1.04890 1.21071 0.97350 0.93805 0.99667 1.20265 0.96559 0.94027 1.01433 1.20735 0.92826 0.99135 1.03032 1.21250 0.91210 1.00397 0.99346 1.22655 1.02563 0.92534 1.03259 1.17915 0.88350 0.85910 1.11516 1.84830 1.88559 1.19192 1.34220 0.88070 0.88861 0.89166 0.95552 0.91301 0.92454 0.86468 0.83636 0.90238 0.90747 0.90672 0.83774 0.81985 0.74595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.11 10.44 71.24 0.74 -0.37 16 2 C 0.00 0.04 7.27 41.37 0.30 0.35 16 3 N -0.37 -11.42 6.87 -47.27 -0.32 -11.75 16 4 H 0.46 10.89 8.96 -219.99 -1.97 8.92 16 5 N -0.20 -8.68 8.01 -48.09 -0.39 -9.07 16 6 C -0.07 -3.05 6.80 42.45 0.29 -2.76 16 7 C 0.59 28.61 7.56 86.69 0.66 29.26 16 8 O -0.54 -26.40 12.94 -2.19 -0.03 -26.43 16 9 N -0.53 -26.41 2.70 -638.89 -1.72 -28.13 16 10 C 0.24 12.50 4.51 85.63 0.39 12.88 16 11 C -0.52 -28.99 8.38 25.60 0.21 -28.78 16 12 H 0.03 1.69 7.81 -2.91 -0.02 1.67 16 13 C 0.04 2.12 5.46 84.66 0.46 2.58 16 14 N -0.91 -50.10 13.29 21.45 0.28 -49.82 16 15 Si 0.94 43.69 29.54 68.60 2.03 45.72 16 16 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 C 0.13 6.05 6.49 38.17 0.25 6.30 16 20 C -0.16 -6.89 9.29 22.39 0.21 -6.69 16 21 C -0.10 -3.40 9.69 22.25 0.22 -3.19 16 22 C -0.12 -3.71 5.88 -19.85 -0.12 -3.83 16 23 C -0.10 -2.08 10.01 71.23 0.71 -1.36 16 24 C -0.10 -3.49 9.69 22.25 0.22 -3.28 16 25 C -0.19 -8.04 9.03 22.40 0.20 -7.84 16 26 C 0.02 0.67 7.28 22.57 0.16 0.83 16 27 O -0.46 -14.62 13.20 -92.68 -1.22 -15.84 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 31 H 0.03 1.45 5.67 -2.39 -0.01 1.44 16 32 H 0.07 3.71 5.38 -2.39 -0.01 3.69 16 33 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 34 H 0.12 5.26 5.90 -2.91 -0.02 5.24 16 35 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 38 H 0.07 1.35 8.08 -2.38 -0.02 1.33 16 39 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 40 H 0.16 7.35 4.56 -60.08 -0.27 7.07 16 41 H 0.40 8.81 9.07 -74.06 -0.67 8.14 16 Total: -1.00 -74.17 346.15 1.73 -72.44 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -1.80 Total: 28.77 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 4.90 Total: -5.89 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -2.15 Total: -98.76 kcal Atomic # 8 Polarization: -41.02 SS G_CDS: -1.25 Total: -42.27 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -74.17 1.73 -72.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362099069.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.856 kcal (2) G-P(sol) polarization free energy of solvation -74.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds