Wall clock time and date at job start Tue Mar 31 2020 10:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 C 1.50696 * 109.46661 * 134.01300 * 3 2 1 5 5 C 1.38303 * 119.96840 * 89.99823 * 4 3 2 6 6 C 1.38259 * 120.14487 * 179.97438 * 5 4 3 7 7 C 1.38138 * 120.06716 * 0.02562 * 6 5 4 8 8 C 1.38848 * 119.93048 * 359.97168 * 7 6 5 9 9 N 1.39942 * 120.07085 * 179.97438 * 8 7 6 10 10 C 1.34772 * 120.00161 * 146.38106 * 9 8 7 11 11 O 1.21586 * 119.99660 * 4.86407 * 10 9 8 12 12 N 1.34774 * 120.00168 * 184.86482 * 10 9 8 13 13 C 1.47745 * 125.82163 * 359.90600 * 12 10 9 14 14 C 1.54912 * 104.84236 * 155.83509 * 13 12 10 15 15 C 1.55152 * 101.58262 * 37.09118 * 14 13 12 16 16 O 1.42899 * 110.71892 * 82.86526 * 15 14 13 17 17 C 1.50700 * 110.87202 * 206.06491 * 15 14 13 18 18 H 1.08007 * 119.99770 * 117.44385 * 17 15 14 19 19 C 1.37875 * 120.00435 * 297.44596 * 17 15 14 20 20 N 1.31506 * 120.00131 * 184.41485 * 19 17 15 21 21 Si 1.86798 * 119.99680 * 4.40866 * 19 17 15 22 22 H 1.48493 * 109.47131 * 87.10113 * 21 19 17 23 23 H 1.48499 * 109.47042 * 207.10269 * 21 19 17 24 24 H 1.48503 * 109.47398 * 327.10325 * 21 19 17 25 25 C 1.47024 * 125.65077 * 179.97438 * 12 10 9 26 26 C 1.38095 * 119.96528 * 270.24661 * 4 3 2 27 27 H 1.08994 * 109.47355 * 14.01431 * 3 2 1 28 28 H 1.09000 * 109.46499 * 254.01145 * 3 2 1 29 29 H 1.08001 * 119.92411 * 359.97438 * 5 4 3 30 30 H 1.07995 * 119.96979 * 179.97438 * 6 5 4 31 31 H 1.07997 * 120.03147 * 179.97438 * 7 6 5 32 32 H 0.97005 * 119.99586 * 326.38178 * 9 8 7 33 33 H 1.08997 * 110.29330 * 37.02128 * 13 12 10 34 34 H 1.09011 * 110.43402 * 274.70969 * 13 12 10 35 35 H 1.09003 * 110.99761 * 279.02006 * 14 13 12 36 36 H 1.08997 * 111.00597 * 155.16884 * 14 13 12 37 37 H 0.96703 * 114.00300 * 185.02208 * 16 15 14 38 38 H 0.97003 * 120.00380 * 179.97438 * 20 19 17 39 39 H 1.09009 * 109.87932 * 61.60497 * 25 12 10 40 40 H 1.09001 * 109.88352 * 300.59752 * 25 12 10 41 41 H 1.08001 * 120.03586 * 0.02782 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1098 0.9881 -1.0218 5 6 3.3394 2.3025 -0.6578 6 6 3.8003 3.2113 -1.5922 7 6 4.0324 2.8090 -2.8932 8 6 3.8029 1.4902 -3.2618 9 7 4.0365 1.0795 -4.5791 10 6 4.4789 -0.1691 -4.8273 11 8 4.5907 -0.9667 -3.9164 12 7 4.7974 -0.5336 -6.0851 13 6 4.7092 0.3264 -7.2832 14 6 5.7191 -0.2854 -8.2860 15 6 5.5454 -1.8033 -8.0161 16 8 4.4240 -2.3197 -8.7358 17 6 6.7994 -2.5591 -8.3729 18 1 7.3436 -3.0938 -7.6084 19 6 7.2520 -2.5680 -9.6752 20 7 8.2959 -3.2973 -10.0036 21 14 6.3823 -1.5442 -10.9732 22 1 6.9489 -0.1717 -10.9827 23 1 6.5747 -2.1684 -12.3068 24 1 4.9317 -1.4786 -10.6620 25 6 5.2902 -1.8568 -6.4951 26 6 3.3350 0.5809 -2.3220 27 1 2.9719 -0.9962 -0.2488 28 1 2.9711 0.2839 0.9879 29 1 3.1583 2.6195 0.3586 30 1 3.9782 4.2371 -1.3050 31 1 4.3920 3.5195 -3.6227 32 1 3.8800 1.6936 -5.3135 33 1 4.9926 1.3494 -7.0358 34 1 3.7010 0.3007 -7.6968 35 1 6.7359 0.0374 -8.0623 36 1 5.4491 -0.0377 -9.3126 37 1 4.2253 -3.2461 -8.5424 38 1 8.6142 -3.3038 -10.9199 39 1 4.5415 -2.6168 -6.2714 40 1 6.2183 -2.0854 -5.9711 41 1 3.1513 -0.4446 -2.6068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364369516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:23 Heat of formation + Delta-G solvation = -4.473634 kcal Electronic energy + Delta-G solvation = -25465.158762 eV Core-core repulsion = 21731.816186 eV Total energy + Delta-G solvation = -3733.342576 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.73865 -39.31058 -37.85445 -36.78802 -34.89963 -34.66837 -32.80281 -32.48746 -30.75164 -29.47214 -28.42234 -27.99561 -25.37362 -23.22737 -22.54671 -21.94045 -20.11694 -19.70400 -18.47628 -17.81818 -17.48230 -16.96541 -16.40895 -15.86839 -15.45278 -15.09348 -14.96478 -14.76730 -14.39798 -14.16088 -13.78396 -13.59718 -13.39687 -13.29601 -13.00658 -12.65440 -12.59283 -12.54636 -12.25210 -12.05527 -11.78104 -11.66517 -11.43436 -11.36754 -11.22863 -10.67046 -10.44786 -10.36461 -10.16007 -9.82475 -9.10010 -9.01367 -8.82160 -8.59390 -8.46810 -8.05033 -6.27720 -4.40234 1.03578 1.24603 2.55317 2.57705 2.62697 3.16697 3.22858 3.36290 3.53331 3.55671 3.94078 4.00382 4.35190 4.47445 4.64497 4.95243 4.96290 4.99864 5.03205 5.09313 5.17896 5.22379 5.41304 5.45811 5.50991 5.60356 5.69861 5.79552 5.98724 6.13858 6.17735 6.30998 6.36656 6.39090 6.45544 6.50963 6.56349 6.90932 6.99670 7.11296 7.34698 7.40851 7.99341 8.12815 8.60440 8.66732 8.82093 9.34707 10.82594 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025635 B = 0.002860 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.989174 B = 9789.116377 C =10199.068124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.213 3.787 3 C 0.017 3.983 4 C -0.078 4.078 5 C -0.130 4.130 6 C -0.099 4.099 7 C -0.146 4.146 8 C 0.176 3.824 9 N -0.689 5.689 10 C 0.718 3.282 11 O -0.578 6.578 12 N -0.622 5.622 13 C 0.098 3.902 14 C -0.125 4.125 15 C 0.217 3.783 16 O -0.573 6.573 17 C -0.552 4.552 18 H 0.079 0.921 19 C 0.089 3.911 20 N -0.885 5.885 21 Si 0.874 3.126 22 H -0.284 1.284 23 H -0.299 1.299 24 H -0.226 1.226 25 C 0.113 3.887 26 C -0.109 4.109 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.406 0.594 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.366 0.634 38 H 0.268 0.732 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.837 12.788 14.197 20.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.105 4.105 3 C -0.023 4.023 4 C -0.080 4.080 5 C -0.149 4.149 6 C -0.118 4.118 7 C -0.167 4.167 8 C 0.080 3.920 9 N -0.337 5.337 10 C 0.421 3.579 11 O -0.456 6.456 12 N -0.358 5.358 13 C -0.025 4.025 14 C -0.163 4.163 15 C 0.177 3.823 16 O -0.379 6.379 17 C -0.589 4.589 18 H 0.098 0.902 19 C -0.116 4.116 20 N -0.521 5.521 21 Si 0.702 3.298 22 H -0.211 1.211 23 H -0.226 1.226 24 H -0.149 1.149 25 C -0.009 4.009 26 C -0.130 4.130 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.242 0.758 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.214 0.786 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.335 12.692 14.478 21.397 hybrid contribution 0.303 0.336 -1.074 1.165 sum -9.032 13.028 13.405 20.760 Atomic orbital electron populations 1.81220 1.12967 1.08657 1.08602 1.29055 0.95026 0.93212 0.93217 1.18177 0.81685 1.01746 1.00649 1.19258 1.01003 0.93991 0.93735 1.20971 1.01497 0.92516 0.99876 1.20854 0.98988 0.99540 0.92397 1.20942 1.03517 0.94965 0.97272 1.17504 0.97092 0.93283 0.84094 1.42687 1.69619 1.14473 1.06871 1.15393 0.78347 0.81679 0.82489 1.90877 1.60732 1.51132 1.42865 1.47806 1.67538 1.15883 1.04588 1.22453 1.00539 0.93422 0.86044 1.23089 0.98783 0.96364 0.98044 1.19971 0.86318 0.90974 0.85053 1.86506 1.51597 1.30645 1.69187 1.21170 1.08040 1.33783 0.95957 0.90249 1.24946 0.93957 0.94186 0.98542 1.69923 1.24364 1.38309 1.19485 0.87086 0.83421 0.79531 0.79800 1.21076 1.22633 1.14883 1.22749 0.98682 0.81544 0.97935 1.21330 0.98260 1.01353 0.92018 0.86016 0.86263 0.85792 0.85534 0.85669 0.75760 0.91907 0.91335 0.89235 0.90484 0.78646 0.92269 0.92279 0.90651 0.83472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.75 18.54 42.15 0.78 -4.97 16 2 C 0.21 2.12 15.42 -20.76 -0.32 1.80 16 3 C 0.02 0.11 5.83 -30.67 -0.18 -0.06 16 4 C -0.08 -0.72 5.09 -104.65 -0.53 -1.25 16 5 C -0.13 -1.04 9.70 -39.55 -0.38 -1.42 16 6 C -0.10 -0.81 10.04 -39.61 -0.40 -1.20 16 7 C -0.15 -1.39 9.96 -39.39 -0.39 -1.78 16 8 C 0.18 2.13 6.32 -83.69 -0.53 1.60 16 9 N -0.69 -8.81 5.29 -14.23 -0.08 -8.88 16 10 C 0.72 11.94 8.35 -86.92 -0.73 11.21 16 11 O -0.58 -11.12 14.02 5.29 0.07 -11.04 16 12 N -0.62 -10.58 3.34 -175.97 -0.59 -11.17 16 13 C 0.10 1.47 6.55 -2.35 -0.02 1.46 16 14 C -0.12 -2.34 4.86 -24.58 -0.12 -2.46 16 15 C 0.22 4.56 0.67 -89.94 -0.06 4.50 16 16 O -0.57 -11.72 10.37 -35.23 -0.37 -12.08 16 17 C -0.55 -14.12 8.82 -34.44 -0.30 -14.42 16 18 H 0.08 2.23 7.81 -52.48 -0.41 1.82 16 19 C 0.09 2.39 5.47 -17.82 -0.10 2.29 16 20 N -0.88 -25.52 13.96 55.43 0.77 -24.74 16 21 Si 0.87 20.22 24.02 -169.99 -4.08 16.14 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.30 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.23 -5.05 5.32 56.52 0.30 -4.75 16 25 C 0.11 2.20 6.20 -3.06 -0.02 2.18 16 26 C -0.11 -1.34 8.36 -39.39 -0.33 -1.66 16 27 H 0.12 0.70 8.09 -51.93 -0.42 0.28 16 28 H 0.12 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 30 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 31 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.41 4.12 7.37 -40.82 -0.30 3.82 16 33 H 0.06 0.74 7.39 -51.93 -0.38 0.35 16 34 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.09 1.71 8.05 -51.93 -0.42 1.29 16 36 H 0.08 1.47 4.99 -51.93 -0.26 1.21 16 37 H 0.37 6.55 9.08 45.56 0.41 6.97 16 38 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.06 1.12 8.06 -51.92 -0.42 0.70 16 40 H 0.08 1.58 7.65 -51.93 -0.40 1.18 16 41 H 0.15 2.09 6.12 -52.49 -0.32 1.77 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -33.34 344.01 -6.96 -40.30 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -4.26 Total: 10.50 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -4.40 Total: 0.77 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.89 Total: -49.76 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.29 Total: -23.13 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.08 Total: 16.14 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.34 -6.96 -40.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364369516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.829 kcal (2) G-P(sol) polarization free energy of solvation -33.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds