Wall clock time and date at job start Tue Mar 31 2020 10:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 C 1.50696 * 109.46661 * 134.01300 * 3 2 1 5 5 C 1.38303 * 119.96840 * 89.99823 * 4 3 2 6 6 C 1.38259 * 120.14487 * 179.97438 * 5 4 3 7 7 C 1.38138 * 120.06716 * 0.02562 * 6 5 4 8 8 C 1.38848 * 119.93048 * 359.97168 * 7 6 5 9 9 N 1.39942 * 120.07085 * 179.97438 * 8 7 6 10 10 C 1.34772 * 120.00161 * 146.38106 * 9 8 7 11 11 O 1.21586 * 119.99660 * 4.86407 * 10 9 8 12 12 N 1.34774 * 120.00168 * 184.86482 * 10 9 8 13 13 C 1.47745 * 125.82163 * 359.90600 * 12 10 9 14 14 C 1.54912 * 104.84236 * 155.83509 * 13 12 10 15 15 C 1.55152 * 101.58262 * 37.09118 * 14 13 12 16 16 O 1.42899 * 110.71892 * 82.86526 * 15 14 13 17 17 C 1.50700 * 110.87202 * 206.06491 * 15 14 13 18 18 H 1.08007 * 119.99770 * 117.44385 * 17 15 14 19 19 C 1.37875 * 120.00435 * 297.44596 * 17 15 14 20 20 N 1.31506 * 120.00131 * 184.41485 * 19 17 15 21 21 Si 1.86798 * 119.99680 * 4.40866 * 19 17 15 22 22 H 1.48493 * 109.47131 * 87.10113 * 21 19 17 23 23 H 1.48499 * 109.47042 * 207.10269 * 21 19 17 24 24 H 1.48503 * 109.47398 * 327.10325 * 21 19 17 25 25 C 1.47024 * 125.65077 * 179.97438 * 12 10 9 26 26 C 1.38095 * 119.96528 * 270.24661 * 4 3 2 27 27 H 1.08994 * 109.47355 * 14.01431 * 3 2 1 28 28 H 1.09000 * 109.46499 * 254.01145 * 3 2 1 29 29 H 1.08001 * 119.92411 * 359.97438 * 5 4 3 30 30 H 1.07995 * 119.96979 * 179.97438 * 6 5 4 31 31 H 1.07997 * 120.03147 * 179.97438 * 7 6 5 32 32 H 0.97005 * 119.99586 * 326.38178 * 9 8 7 33 33 H 1.08997 * 110.29330 * 37.02128 * 13 12 10 34 34 H 1.09011 * 110.43402 * 274.70969 * 13 12 10 35 35 H 1.09003 * 110.99761 * 279.02006 * 14 13 12 36 36 H 1.08997 * 111.00597 * 155.16884 * 14 13 12 37 37 H 0.96703 * 114.00300 * 185.02208 * 16 15 14 38 38 H 0.97003 * 120.00380 * 179.97438 * 20 19 17 39 39 H 1.09009 * 109.87932 * 61.60497 * 25 12 10 40 40 H 1.09001 * 109.88352 * 300.59752 * 25 12 10 41 41 H 1.08001 * 120.03586 * 0.02782 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1098 0.9881 -1.0218 5 6 3.3394 2.3025 -0.6578 6 6 3.8003 3.2113 -1.5922 7 6 4.0324 2.8090 -2.8932 8 6 3.8029 1.4902 -3.2618 9 7 4.0365 1.0795 -4.5791 10 6 4.4789 -0.1691 -4.8273 11 8 4.5907 -0.9667 -3.9164 12 7 4.7974 -0.5336 -6.0851 13 6 4.7092 0.3264 -7.2832 14 6 5.7191 -0.2854 -8.2860 15 6 5.5454 -1.8033 -8.0161 16 8 4.4240 -2.3197 -8.7358 17 6 6.7994 -2.5591 -8.3729 18 1 7.3436 -3.0938 -7.6084 19 6 7.2520 -2.5680 -9.6752 20 7 8.2959 -3.2973 -10.0036 21 14 6.3823 -1.5442 -10.9732 22 1 6.9489 -0.1717 -10.9827 23 1 6.5747 -2.1684 -12.3068 24 1 4.9317 -1.4786 -10.6620 25 6 5.2902 -1.8568 -6.4951 26 6 3.3350 0.5809 -2.3220 27 1 2.9719 -0.9962 -0.2488 28 1 2.9711 0.2839 0.9879 29 1 3.1583 2.6195 0.3586 30 1 3.9782 4.2371 -1.3050 31 1 4.3920 3.5195 -3.6227 32 1 3.8800 1.6936 -5.3135 33 1 4.9926 1.3494 -7.0358 34 1 3.7010 0.3007 -7.6968 35 1 6.7359 0.0374 -8.0623 36 1 5.4491 -0.0377 -9.3126 37 1 4.2253 -3.2461 -8.5424 38 1 8.6142 -3.3038 -10.9199 39 1 4.5415 -2.6168 -6.2714 40 1 6.2183 -2.0854 -5.9711 41 1 3.1513 -0.4446 -2.6068 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364369516.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:22 Heat of formation + Delta-G solvation = -29.106552 kcal Electronic energy + Delta-G solvation = -25466.226926 eV Core-core repulsion = 21731.816186 eV Total energy + Delta-G solvation = -3734.410740 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.84896 -40.35053 -39.17794 -37.66354 -36.21506 -35.89893 -34.50251 -33.52147 -32.11487 -30.52027 -29.89099 -28.72282 -27.07355 -24.49250 -23.55718 -22.76504 -21.58610 -21.05401 -19.71840 -19.19062 -18.68529 -17.83474 -17.24210 -17.05563 -16.80087 -16.61518 -16.30855 -16.01498 -15.32810 -15.17573 -15.01711 -14.79408 -14.70257 -14.46009 -14.11670 -14.08136 -13.95960 -13.49551 -13.34608 -13.19823 -13.11845 -12.85522 -12.76332 -12.40453 -12.29335 -12.16496 -12.06953 -11.78481 -11.43081 -11.05882 -10.94870 -10.79571 -10.35301 -9.76421 -9.72997 -8.98858 -8.35542 -6.51553 0.32129 0.49091 1.38770 1.44731 1.48427 1.69678 1.78079 1.81835 1.99306 2.40829 2.78805 2.84058 3.00347 3.33055 3.53218 3.72351 3.84324 4.00461 4.06005 4.21497 4.30116 4.40675 4.41757 4.46869 4.52200 4.66241 4.77208 4.79816 4.81483 4.92515 5.01998 5.05989 5.10292 5.37231 5.46321 5.48173 5.51535 5.60471 5.67638 5.99438 6.07237 6.13909 6.59625 6.59951 6.82277 7.11524 7.29719 7.38411 8.78701 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025635 B = 0.002860 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.989174 B = 9789.116377 C =10199.068124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C 0.239 3.761 3 C 0.021 3.979 4 C -0.082 4.082 5 C -0.122 4.122 6 C -0.099 4.099 7 C -0.143 4.143 8 C 0.143 3.857 9 N -0.673 5.673 10 C 0.715 3.285 11 O -0.612 6.612 12 N -0.626 5.626 13 C 0.106 3.894 14 C -0.128 4.128 15 C 0.218 3.782 16 O -0.572 6.572 17 C -0.552 4.552 18 H 0.035 0.965 19 C 0.035 3.965 20 N -0.937 5.937 21 Si 0.938 3.062 22 H -0.268 1.268 23 H -0.310 1.310 24 H -0.208 1.208 25 C 0.123 3.877 26 C -0.135 4.135 27 H 0.129 0.871 28 H 0.163 0.837 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.146 0.854 32 H 0.420 0.580 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.376 0.624 38 H 0.268 0.732 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.108 16.425 15.270 24.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.077 4.077 3 C -0.019 4.019 4 C -0.084 4.084 5 C -0.141 4.141 6 C -0.117 4.117 7 C -0.164 4.164 8 C 0.048 3.952 9 N -0.322 5.322 10 C 0.418 3.582 11 O -0.492 6.492 12 N -0.362 5.362 13 C -0.015 4.015 14 C -0.166 4.166 15 C 0.177 3.823 16 O -0.379 6.379 17 C -0.590 4.590 18 H 0.054 0.946 19 C -0.165 4.165 20 N -0.576 5.576 21 Si 0.763 3.237 22 H -0.193 1.193 23 H -0.239 1.239 24 H -0.131 1.131 25 C -0.001 4.001 26 C -0.156 4.156 27 H 0.147 0.853 28 H 0.181 0.819 29 H 0.175 0.825 30 H 0.176 0.824 31 H 0.164 0.836 32 H 0.258 0.742 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.225 0.775 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.635 16.382 15.576 24.982 hybrid contribution 0.752 -0.830 -1.247 1.676 sum -9.882 15.552 14.329 23.342 Atomic orbital electron populations 1.81242 1.14922 1.10748 1.10837 1.29611 0.95484 0.91352 0.91271 1.18460 0.79336 1.01843 1.02221 1.19455 1.00719 0.95272 0.92932 1.21421 0.99569 0.91609 1.01491 1.21313 0.97613 1.01086 0.91671 1.21218 1.02675 0.93944 0.98529 1.17806 0.99148 0.94567 0.83651 1.42438 1.68716 1.13047 1.07987 1.15538 0.78281 0.82651 0.81747 1.90857 1.62050 1.52525 1.43795 1.47705 1.67860 1.15128 1.05547 1.22538 1.00247 0.94669 0.84078 1.23030 0.99732 0.94354 0.99511 1.19795 0.84364 0.92130 0.85995 1.86450 1.50681 1.31644 1.69145 1.21416 1.09409 1.33255 0.94873 0.94649 1.25801 0.94546 0.95270 1.00881 1.70068 1.26695 1.40794 1.20020 0.86097 0.83135 0.78360 0.76076 1.19315 1.23884 1.13054 1.22354 0.97601 0.83365 0.96738 1.21286 1.00194 1.00306 0.93822 0.85279 0.81947 0.82502 0.82395 0.83614 0.74179 0.87780 0.89719 0.90031 0.90022 0.77505 0.92312 0.92373 0.93371 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.97 18.54 20.01 0.37 -12.60 16 2 C 0.24 4.46 15.42 89.45 1.38 5.84 16 3 C 0.02 0.22 5.83 28.04 0.16 0.39 16 4 C -0.08 -1.33 5.09 -19.88 -0.10 -1.43 16 5 C -0.12 -1.46 9.70 22.29 0.22 -1.25 16 6 C -0.10 -1.18 10.04 22.25 0.22 -0.96 16 7 C -0.14 -2.26 9.96 22.39 0.22 -2.04 16 8 C 0.14 3.23 6.32 38.15 0.24 3.47 16 9 N -0.67 -16.12 5.29 -317.19 -1.68 -17.80 16 10 C 0.72 23.45 8.35 179.06 1.49 24.94 16 11 O -0.61 -24.13 14.02 -3.99 -0.06 -24.19 16 12 N -0.63 -20.72 3.34 -828.91 -2.77 -23.48 16 13 C 0.11 2.87 6.55 86.79 0.57 3.44 16 14 C -0.13 -4.56 4.86 31.99 0.16 -4.41 16 15 C 0.22 9.10 0.67 -10.35 -0.01 9.10 16 16 O -0.57 -22.61 10.37 -148.98 -1.54 -24.16 16 17 C -0.55 -29.22 8.82 25.60 0.23 -28.99 16 18 H 0.04 2.13 7.81 -2.91 -0.02 2.10 16 19 C 0.04 1.93 5.47 84.66 0.46 2.39 16 20 N -0.94 -56.08 13.96 21.45 0.30 -55.78 16 21 Si 0.94 41.57 24.02 68.60 1.65 43.22 16 22 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 23 H -0.31 -14.29 7.11 99.48 0.71 -13.58 16 24 H -0.21 -8.58 5.32 99.48 0.53 -8.05 16 25 C 0.12 4.88 6.20 86.73 0.54 5.42 16 26 C -0.14 -3.24 8.36 22.39 0.19 -3.05 16 27 H 0.13 1.30 8.09 -2.39 -0.02 1.28 16 28 H 0.16 0.39 8.09 -2.39 -0.02 0.37 16 29 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 30 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 31 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 32 H 0.42 7.31 7.37 -92.70 -0.68 6.62 16 33 H 0.10 1.99 7.39 -2.39 -0.02 1.97 16 34 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.08 3.01 8.05 -2.39 -0.02 2.99 16 36 H 0.08 2.84 4.99 -2.39 -0.01 2.83 16 37 H 0.38 13.23 9.08 -74.06 -0.67 12.56 16 38 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.06 2.27 8.06 -2.38 -0.02 2.25 16 40 H 0.05 2.14 7.65 -2.39 -0.02 2.12 16 41 H 0.12 3.48 6.12 -2.91 -0.02 3.46 16 Total: -1.00 -77.47 344.01 1.80 -75.67 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: -0.44 Total: 26.27 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 5.97 Total: 12.86 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -3.77 Total: -109.67 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -1.60 Total: -48.35 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.65 Total: 43.22 kcal Total: -77.47 1.80 -75.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364369516.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.562 kcal (2) G-P(sol) polarization free energy of solvation -77.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds