Wall clock time and date at job start Tue Mar 31 2020 10:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39632 * 120.15244 * 198.40617 * 3 2 1 5 5 C 1.37945 * 119.84791 * 180.02562 * 4 3 2 6 6 C 1.38361 * 120.15265 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.84561 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46845 * 90.00310 * 7 6 5 9 9 C 1.34779 * 119.99582 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00143 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99809 * 180.02562 * 9 8 7 12 12 N 1.46897 * 109.47156 * 179.97438 * 11 9 8 13 13 C 1.47479 * 110.99965 * 189.99845 * 12 11 9 14 14 C 1.53517 * 87.99753 * 138.66774 * 13 12 11 15 15 O 1.42906 * 114.16678 * 87.65378 * 14 13 12 16 16 C 1.50698 * 114.17065 * 220.35504 * 14 13 12 17 17 H 1.07995 * 120.00122 * 0.02562 * 16 14 13 18 18 C 1.37875 * 119.99831 * 180.02562 * 16 14 13 19 19 N 1.31519 * 120.00087 * 180.02562 * 18 16 14 20 20 Si 1.86803 * 120.00030 * 0.02562 * 18 16 14 21 21 H 1.48499 * 109.47114 * 90.00344 * 20 18 16 22 22 H 1.48502 * 109.46994 * 209.99928 * 20 18 16 23 23 H 1.48500 * 109.47211 * 329.99966 * 20 18 16 24 24 C 1.47487 * 110.99585 * 285.96811 * 12 11 9 25 25 C 1.38357 * 120.30137 * 0.23210 * 6 5 4 26 26 C 1.37940 * 120.15643 * 359.48734 * 25 6 5 27 27 H 1.08006 * 120.07450 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.92226 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.46989 * 329.99950 * 7 6 5 30 30 H 1.08994 * 109.46714 * 209.99941 * 7 6 5 31 31 H 0.96999 * 120.00124 * 359.97438 * 8 7 6 32 32 H 1.08999 * 109.47300 * 59.99173 * 11 9 8 33 33 H 1.09004 * 109.46837 * 299.99634 * 11 9 8 34 34 H 1.09002 * 113.47562 * 253.46722 * 13 12 11 35 35 H 1.09003 * 113.47677 * 23.87325 * 13 12 11 36 36 H 0.96696 * 113.99578 * 180.02562 * 15 14 13 37 37 H 0.96994 * 120.00020 * 179.97438 * 19 18 16 38 38 H 1.09004 * 113.47787 * 336.06095 * 24 12 11 39 39 H 1.09001 * 113.47615 * 106.47267 * 24 12 11 40 40 H 1.08006 * 119.91799 * 179.71899 * 25 6 5 41 41 H 1.07995 * 120.08128 * 180.25260 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 1.1466 0.3812 5 6 4.6482 1.1404 0.3784 6 6 5.3374 0.0024 -0.0015 7 6 6.8444 0.0035 -0.0026 8 7 7.3340 -0.4330 1.3074 9 6 8.6593 -0.5094 1.5402 10 8 9.4466 -0.2173 0.6651 11 6 9.1629 -0.9589 2.8876 12 7 10.6319 -0.9577 2.8866 13 6 11.1617 -1.6133 4.0967 14 6 12.2180 -2.2827 3.2062 15 8 13.4026 -1.5057 3.0186 16 6 12.4959 -3.7223 3.5542 17 1 11.9674 -4.1923 4.3703 18 6 13.4251 -4.4394 2.8308 19 7 13.6674 -5.6960 3.1342 20 14 14.3400 -3.6262 1.4197 21 1 15.5869 -3.0032 1.9318 22 1 14.6809 -4.6475 0.3969 23 1 13.4795 -2.5816 0.8085 24 6 11.1607 -2.0930 2.1078 25 6 4.6492 -1.1349 -0.3855 26 6 3.2699 -1.1445 -0.3819 27 1 2.7321 2.0360 0.6769 28 1 5.1916 2.0262 0.6727 29 1 7.2069 1.0106 -0.2090 30 1 7.2076 -0.6781 -0.7717 31 1 6.7043 -0.6662 2.0074 32 1 8.8008 -1.9661 3.0933 33 1 8.7992 -0.2778 3.6571 34 1 11.5829 -0.9149 4.8199 35 1 10.4647 -2.3189 4.5488 36 1 14.0660 -1.9294 2.4570 37 1 14.3208 -6.2006 2.6250 38 1 10.4638 -2.9274 2.0285 39 1 11.5801 -1.8012 1.1449 40 1 5.1934 -2.0183 -0.6853 41 1 2.7340 -2.0341 -0.6779 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364692864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:22 Heat of formation + Delta-G solvation = 31.482943 kcal Electronic energy + Delta-G solvation = -24587.040326 eV Core-core repulsion = 20855.256944 eV Total energy + Delta-G solvation = -3731.783382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.40466 -39.88774 -38.68918 -37.01908 -35.12727 -34.75046 -32.42986 -32.15928 -31.69029 -29.99384 -27.39966 -26.01155 -25.16506 -23.36579 -23.18561 -22.22215 -20.38514 -19.47899 -19.13153 -17.52053 -17.17466 -16.39527 -16.34747 -16.16766 -15.49530 -15.36865 -15.01770 -14.95387 -14.51208 -14.27082 -14.08529 -13.91198 -13.47543 -13.35061 -13.21452 -13.04377 -12.82649 -12.70629 -12.43104 -12.25078 -11.97209 -11.91218 -11.63478 -11.34746 -10.94582 -10.63680 -10.40488 -9.96720 -9.82268 -9.62485 -9.30304 -9.25791 -9.19869 -8.91843 -8.54296 -8.12288 -6.33597 -4.37841 0.11642 0.75155 2.17545 2.33994 2.76841 3.08564 3.09776 3.21793 3.25066 3.34204 3.42838 4.13908 4.14676 4.23387 4.30253 4.62271 4.72941 4.78374 4.80389 4.92972 5.12229 5.14862 5.30857 5.38069 5.42293 5.44801 5.51992 5.59170 5.70397 5.76421 5.91553 5.96787 6.14621 6.18859 6.27003 6.46338 6.72325 6.82907 6.93528 6.98017 7.28697 7.39986 7.70857 8.12531 8.31572 8.67569 8.70877 9.26213 10.78625 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.002261 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.579675 B =12381.388607 C =12597.991455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C 0.253 3.747 3 C -0.026 4.026 4 C -0.071 4.071 5 C -0.101 4.101 6 C -0.074 4.074 7 C 0.157 3.843 8 N -0.737 5.737 9 C 0.517 3.483 10 O -0.513 6.513 11 C -0.002 4.002 12 N -0.452 5.452 13 C 0.017 3.983 14 C 0.202 3.798 15 O -0.547 6.547 16 C -0.534 4.534 17 H 0.087 0.913 18 C 0.078 3.922 19 N -0.882 5.882 20 Si 0.858 3.142 21 H -0.267 1.267 22 H -0.286 1.286 23 H -0.251 1.251 24 C -0.025 4.025 25 C -0.101 4.101 26 C -0.070 4.070 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.400 0.600 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.348 0.652 37 H 0.269 0.731 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.138 0.862 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.344 10.613 -5.580 22.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.062 4.062 3 C -0.029 4.029 4 C -0.092 4.092 5 C -0.120 4.120 6 C -0.075 4.075 7 C 0.033 3.967 8 N -0.392 5.392 9 C 0.303 3.697 10 O -0.386 6.386 11 C -0.134 4.134 12 N -0.175 5.175 13 C -0.112 4.112 14 C 0.161 3.839 15 O -0.358 6.358 16 C -0.571 4.571 17 H 0.105 0.895 18 C -0.127 4.127 19 N -0.518 5.518 20 Si 0.687 3.313 21 H -0.194 1.194 22 H -0.213 1.213 23 H -0.176 1.176 24 C -0.154 4.154 25 C -0.119 4.119 26 C -0.091 4.091 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.234 0.766 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.200 0.800 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.156 0.844 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.559 11.772 -6.074 24.457 hybrid contribution 0.382 -1.054 -0.620 1.281 sum -20.178 10.718 -6.694 23.808 Atomic orbital electron populations 1.81283 1.12095 1.07259 1.08441 1.25735 0.92692 0.93921 0.93862 1.16061 0.84303 0.96352 1.06199 1.21202 0.94213 0.96795 0.96969 1.21098 0.93457 0.98487 0.98932 1.20222 0.95599 0.93924 0.97770 1.20205 0.88080 1.01837 0.86534 1.46052 1.07369 1.71004 1.14776 1.20735 0.81416 0.77247 0.90315 1.90728 1.55004 1.46806 1.46089 1.22638 0.94480 1.01662 0.94596 1.68977 1.03586 1.37359 1.07572 1.23999 0.96541 0.96520 0.94100 1.20099 0.82391 0.90120 0.91304 1.86460 1.28516 1.48235 1.72576 1.21285 1.24272 0.93111 1.18477 0.89528 1.25005 0.96070 0.94853 0.96758 1.69867 1.33528 1.08321 1.40102 0.87312 0.81252 0.79709 0.83027 1.19368 1.21318 1.17622 1.24919 0.99295 0.90797 1.00383 1.21125 0.93494 0.98334 0.98951 1.21217 0.94216 0.96819 0.96844 0.84723 0.84484 0.90262 0.90257 0.76583 0.91258 0.88302 0.90176 0.90764 0.79980 0.92081 0.91409 0.90663 0.84409 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.36 18.54 41.84 0.78 -3.58 16 2 C 0.25 1.99 15.33 -22.47 -0.34 1.65 16 3 C -0.03 -0.15 5.73 -106.93 -0.61 -0.76 16 4 C -0.07 -0.33 9.76 -39.17 -0.38 -0.72 16 5 C -0.10 -0.48 9.68 -39.64 -0.38 -0.86 16 6 C -0.07 -0.42 5.25 -104.53 -0.55 -0.97 16 7 C 0.16 1.25 5.79 -5.19 -0.03 1.22 16 8 N -0.74 -6.80 5.55 -61.47 -0.34 -7.15 16 9 C 0.52 7.35 7.67 -10.98 -0.08 7.26 16 10 O -0.51 -9.71 15.76 5.55 0.09 -9.62 16 11 C 0.00 -0.03 5.31 -4.98 -0.03 -0.05 16 12 N -0.45 -8.84 6.06 -245.85 -1.49 -10.33 16 13 C 0.02 0.34 7.12 -7.54 -0.05 0.28 16 14 C 0.20 4.84 1.10 -91.18 -0.10 4.74 16 15 O -0.55 -13.77 13.32 -35.23 -0.47 -14.24 16 16 C -0.53 -14.35 9.27 -34.44 -0.32 -14.67 16 17 H 0.09 2.45 8.06 -52.49 -0.42 2.03 16 18 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 19 N -0.88 -25.48 13.96 55.43 0.77 -24.71 16 20 Si 0.86 20.29 24.42 -169.99 -4.15 16.14 16 21 H -0.27 -6.10 7.06 56.52 0.40 -5.70 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.25 -5.85 5.48 56.52 0.31 -5.54 16 24 C -0.02 -0.54 5.55 -7.47 -0.04 -0.58 16 25 C -0.10 -0.51 9.68 -39.65 -0.38 -0.90 16 26 C -0.07 -0.35 9.76 -39.17 -0.38 -0.73 16 27 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 28 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 29 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 31 H 0.40 2.62 8.46 -40.82 -0.35 2.28 16 32 H 0.07 0.90 7.56 -51.93 -0.39 0.51 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 35 H 0.07 1.34 7.72 -51.93 -0.40 0.94 16 36 H 0.35 8.46 3.17 45.56 0.14 8.61 16 37 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.07 1.43 7.66 -51.93 -0.40 1.04 16 39 H 0.07 1.79 7.12 -51.93 -0.37 1.42 16 40 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 41 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 LS Contribution 352.45 15.07 5.31 5.31 Total: -1.00 -34.25 352.45 -8.09 -42.34 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.79 Total: 8.88 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -3.79 Total: -3.04 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.28 Total: -45.76 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.38 Total: -23.86 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.15 Total: 16.14 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.25 -8.09 -42.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364692864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.821 kcal (2) G-P(sol) polarization free energy of solvation -34.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds