Wall clock time and date at job start Tue Mar 31 2020 10:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39632 * 120.15244 * 198.40617 * 3 2 1 5 5 C 1.37945 * 119.84791 * 180.02562 * 4 3 2 6 6 C 1.38361 * 120.15265 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.84561 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46845 * 90.00310 * 7 6 5 9 9 C 1.34779 * 119.99582 * 180.02562 * 8 7 6 10 10 O 1.21283 * 120.00143 * 359.97438 * 9 8 7 11 11 C 1.50701 * 119.99809 * 180.02562 * 9 8 7 12 12 N 1.46897 * 109.47156 * 179.97438 * 11 9 8 13 13 C 1.47479 * 110.99965 * 189.99845 * 12 11 9 14 14 C 1.53517 * 87.99753 * 138.66774 * 13 12 11 15 15 O 1.42906 * 114.16678 * 87.65378 * 14 13 12 16 16 C 1.50698 * 114.17065 * 220.35504 * 14 13 12 17 17 H 1.07995 * 120.00122 * 0.02562 * 16 14 13 18 18 C 1.37875 * 119.99831 * 180.02562 * 16 14 13 19 19 N 1.31519 * 120.00087 * 180.02562 * 18 16 14 20 20 Si 1.86803 * 120.00030 * 0.02562 * 18 16 14 21 21 H 1.48499 * 109.47114 * 90.00344 * 20 18 16 22 22 H 1.48502 * 109.46994 * 209.99928 * 20 18 16 23 23 H 1.48500 * 109.47211 * 329.99966 * 20 18 16 24 24 C 1.47487 * 110.99585 * 285.96811 * 12 11 9 25 25 C 1.38357 * 120.30137 * 0.23210 * 6 5 4 26 26 C 1.37940 * 120.15643 * 359.48734 * 25 6 5 27 27 H 1.08006 * 120.07450 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.92226 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.46989 * 329.99950 * 7 6 5 30 30 H 1.08994 * 109.46714 * 209.99941 * 7 6 5 31 31 H 0.96999 * 120.00124 * 359.97438 * 8 7 6 32 32 H 1.08999 * 109.47300 * 59.99173 * 11 9 8 33 33 H 1.09004 * 109.46837 * 299.99634 * 11 9 8 34 34 H 1.09002 * 113.47562 * 253.46722 * 13 12 11 35 35 H 1.09003 * 113.47677 * 23.87325 * 13 12 11 36 36 H 0.96696 * 113.99578 * 180.02562 * 15 14 13 37 37 H 0.96994 * 120.00020 * 179.97438 * 19 18 16 38 38 H 1.09004 * 113.47787 * 336.06095 * 24 12 11 39 39 H 1.09001 * 113.47615 * 106.47267 * 24 12 11 40 40 H 1.08006 * 119.91799 * 179.71899 * 25 6 5 41 41 H 1.07995 * 120.08128 * 180.25260 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 1.1466 0.3812 5 6 4.6482 1.1404 0.3784 6 6 5.3374 0.0024 -0.0015 7 6 6.8444 0.0035 -0.0026 8 7 7.3340 -0.4330 1.3074 9 6 8.6593 -0.5094 1.5402 10 8 9.4466 -0.2173 0.6651 11 6 9.1629 -0.9589 2.8876 12 7 10.6319 -0.9577 2.8866 13 6 11.1617 -1.6133 4.0967 14 6 12.2180 -2.2827 3.2062 15 8 13.4026 -1.5057 3.0186 16 6 12.4959 -3.7223 3.5542 17 1 11.9674 -4.1923 4.3703 18 6 13.4251 -4.4394 2.8308 19 7 13.6674 -5.6960 3.1342 20 14 14.3400 -3.6262 1.4197 21 1 15.5869 -3.0032 1.9318 22 1 14.6809 -4.6475 0.3969 23 1 13.4795 -2.5816 0.8085 24 6 11.1607 -2.0930 2.1078 25 6 4.6492 -1.1349 -0.3855 26 6 3.2699 -1.1445 -0.3819 27 1 2.7321 2.0360 0.6769 28 1 5.1916 2.0262 0.6727 29 1 7.2069 1.0106 -0.2090 30 1 7.2076 -0.6781 -0.7717 31 1 6.7043 -0.6662 2.0074 32 1 8.8008 -1.9661 3.0933 33 1 8.7992 -0.2778 3.6571 34 1 11.5829 -0.9149 4.8199 35 1 10.4647 -2.3189 4.5488 36 1 14.0660 -1.9294 2.4570 37 1 14.3208 -6.2006 2.6250 38 1 10.4638 -2.9274 2.0285 39 1 11.5801 -1.8012 1.1449 40 1 5.1934 -2.0183 -0.6853 41 1 2.7340 -2.0341 -0.6779 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364692864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:21 Heat of formation + Delta-G solvation = 3.246639 kcal Electronic energy + Delta-G solvation = -24588.264744 eV Core-core repulsion = 20855.256944 eV Total energy + Delta-G solvation = -3733.007800 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.54823 -40.72150 -39.88661 -37.70480 -36.68705 -35.83866 -34.52014 -32.87696 -32.06500 -31.32718 -28.67488 -27.30469 -26.82053 -24.46824 -23.74271 -23.05523 -21.45620 -20.89440 -19.93509 -19.37554 -18.32633 -18.06676 -17.40753 -16.95634 -16.61157 -16.37529 -16.10927 -15.64577 -15.51068 -15.26985 -15.08505 -14.96116 -14.73579 -14.54092 -14.38577 -14.02328 -13.95855 -13.87730 -13.60638 -13.41021 -13.25124 -12.85188 -12.77262 -12.45163 -12.42820 -12.18478 -12.02034 -11.90288 -11.11480 -10.93829 -10.90067 -10.38165 -10.10083 -9.97375 -9.87905 -9.69024 -8.44028 -6.51884 -0.34788 0.39114 1.21047 1.31009 1.36450 1.57312 1.69414 1.76414 2.16279 2.28113 2.79323 2.81380 2.90087 3.14038 3.60905 3.61957 3.82316 3.84391 3.96550 3.98805 4.21150 4.30273 4.33231 4.36365 4.42093 4.58884 4.67091 4.71669 4.83289 4.86670 4.97158 5.06765 5.11044 5.18372 5.31853 5.32993 5.33441 5.43536 5.54667 5.81127 6.02524 6.14467 6.39761 6.52567 6.61388 6.77868 7.15598 7.32899 8.71225 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.002261 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.579675 B =12381.388607 C =12597.991455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.278 3.722 3 C -0.034 4.034 4 C -0.065 4.065 5 C -0.098 4.098 6 C -0.073 4.073 7 C 0.158 3.842 8 N -0.713 5.713 9 C 0.516 3.484 10 O -0.568 6.568 11 C -0.006 4.006 12 N -0.463 5.463 13 C 0.029 3.971 14 C 0.177 3.823 15 O -0.556 6.556 16 C -0.537 4.537 17 H 0.061 0.939 18 C 0.027 3.973 19 N -0.924 5.924 20 Si 0.914 3.086 21 H -0.253 1.253 22 H -0.283 1.283 23 H -0.249 1.249 24 C -0.011 4.011 25 C -0.101 4.101 26 C -0.067 4.067 27 H 0.151 0.849 28 H 0.151 0.849 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.417 0.583 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.348 0.652 37 H 0.272 0.728 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.146 0.854 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.560 11.989 -5.643 24.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C -0.036 4.036 3 C -0.038 4.038 4 C -0.085 4.085 5 C -0.116 4.116 6 C -0.074 4.074 7 C 0.035 3.965 8 N -0.368 5.368 9 C 0.303 3.697 10 O -0.446 6.446 11 C -0.137 4.137 12 N -0.186 5.186 13 C -0.099 4.099 14 C 0.136 3.864 15 O -0.367 6.367 16 C -0.575 4.575 17 H 0.079 0.921 18 C -0.173 4.173 19 N -0.562 5.562 20 Si 0.740 3.260 21 H -0.179 1.179 22 H -0.209 1.209 23 H -0.174 1.174 24 C -0.141 4.141 25 C -0.120 4.120 26 C -0.087 4.087 27 H 0.169 0.831 28 H 0.169 0.831 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.254 0.746 32 H 0.107 0.893 33 H 0.152 0.848 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.200 0.800 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.163 0.837 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -21.837 13.156 -6.109 26.216 hybrid contribution 0.674 -1.476 -0.548 1.712 sum -21.163 11.681 -6.657 25.072 Atomic orbital electron populations 1.81307 1.13622 1.08965 1.10445 1.26005 0.92903 0.92394 0.92327 1.16154 0.83121 0.97250 1.07270 1.21365 0.94194 0.96926 0.96037 1.21218 0.93441 0.98584 0.98359 1.20038 0.94072 0.94651 0.98629 1.20222 0.89564 1.01345 0.85399 1.45835 1.06044 1.69084 1.15796 1.20736 0.82493 0.76790 0.89666 1.90718 1.56673 1.49654 1.47518 1.22785 0.91177 1.03811 0.95956 1.68831 1.07435 1.35984 1.06310 1.23917 0.95381 0.96645 0.93959 1.20358 0.82951 0.88863 0.94180 1.86455 1.29076 1.48394 1.72758 1.21477 1.23776 0.94776 1.17442 0.92113 1.25731 0.97115 0.95276 0.99213 1.69982 1.34753 1.09745 1.41715 0.86387 0.80516 0.78905 0.80158 1.17854 1.20930 1.17351 1.24627 0.98815 0.91927 0.98734 1.21204 0.93535 0.98487 0.98756 1.21338 0.94155 0.97024 0.96183 0.83138 0.83105 0.90550 0.91156 0.74633 0.89347 0.84751 0.89453 0.88904 0.79965 0.91865 0.91073 0.92895 0.83664 0.83460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.57 18.54 19.00 0.35 -9.21 16 2 C 0.28 4.02 15.33 88.33 1.35 5.37 16 3 C -0.03 -0.31 5.73 -21.36 -0.12 -0.44 16 4 C -0.06 -0.42 9.76 22.54 0.22 -0.20 16 5 C -0.10 -0.63 9.68 22.23 0.22 -0.41 16 6 C -0.07 -0.62 5.25 -19.81 -0.10 -0.73 16 7 C 0.16 2.17 5.79 85.63 0.50 2.67 16 8 N -0.71 -11.21 5.55 -466.78 -2.59 -13.80 16 9 C 0.52 13.56 7.67 87.66 0.67 14.23 16 10 O -0.57 -21.00 15.76 -3.04 -0.05 -21.04 16 11 C -0.01 -0.15 5.31 85.56 0.45 0.30 16 12 N -0.46 -17.17 6.06 -932.07 -5.65 -22.82 16 13 C 0.03 1.12 7.12 83.58 0.60 1.71 16 14 C 0.18 8.38 1.10 -11.15 -0.01 8.37 16 15 O -0.56 -27.54 13.32 -148.98 -1.98 -29.52 16 16 C -0.54 -29.09 9.27 25.60 0.24 -28.85 16 17 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 18 C 0.03 1.51 5.47 84.65 0.46 1.98 16 19 N -0.92 -54.27 13.96 21.45 0.30 -53.97 16 20 Si 0.91 42.08 24.42 68.60 1.67 43.76 16 21 H -0.25 -10.98 7.06 99.48 0.70 -10.28 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.25 -11.29 5.48 99.48 0.54 -10.75 16 24 C -0.01 -0.49 5.55 83.62 0.46 -0.02 16 25 C -0.10 -0.77 9.68 22.23 0.22 -0.56 16 26 C -0.07 -0.50 9.76 22.54 0.22 -0.28 16 27 H 0.15 0.50 8.06 -2.91 -0.02 0.48 16 28 H 0.15 0.58 8.06 -2.91 -0.02 0.56 16 29 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 30 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 31 H 0.42 3.93 8.46 -92.71 -0.78 3.14 16 32 H 0.09 1.97 7.56 -2.39 -0.02 1.95 16 33 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 35 H 0.09 3.13 7.72 -2.39 -0.02 3.11 16 36 H 0.35 16.61 3.17 -74.06 -0.23 16.38 16 37 H 0.27 14.93 8.31 -92.71 -0.77 14.15 16 38 H 0.07 2.95 7.66 -2.39 -0.02 2.93 16 39 H 0.05 2.51 7.12 -2.39 -0.02 2.49 16 40 H 0.15 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.15 0.72 8.06 -2.91 -0.02 0.69 16 Total: -1.00 -75.69 352.45 -2.68 -78.37 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: -0.10 Total: 25.10 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 5.37 Total: 3.14 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -7.59 Total: -99.80 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -2.03 Total: -50.56 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.67 Total: 43.76 kcal Total: -75.69 -2.68 -78.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364692864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.615 kcal (2) G-P(sol) polarization free energy of solvation -75.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds