Wall clock time and date at job start Tue Mar 31 2020 10:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39695 * 120.19964 * 243.79587 * 3 2 1 5 5 C 1.37828 * 119.91651 * 180.02562 * 4 3 2 6 6 C 1.38535 * 120.32492 * 359.97438 * 5 4 3 7 7 C 1.38065 * 120.40772 * 0.02562 * 6 5 4 8 8 C 1.38799 * 120.07678 * 0.02562 * 7 6 5 9 9 N 1.39399 * 120.15942 * 180.02562 * 8 7 6 10 10 C 1.34776 * 120.00608 * 24.84107 * 9 8 7 11 11 O 1.21283 * 119.99684 * 5.53126 * 10 9 8 12 12 C 1.50699 * 120.00222 * 185.52234 * 10 9 8 13 13 C 1.52999 * 109.46924 * 180.02562 * 12 10 9 14 14 N 1.46902 * 109.46988 * 180.02562 * 13 12 10 15 15 C 1.47472 * 111.00032 * 265.97242 * 14 13 12 16 16 C 1.53512 * 87.93532 * 221.29711 * 15 14 13 17 17 O 1.42904 * 114.16855 * 272.38148 * 16 15 14 18 18 C 1.50699 * 114.34772 * 139.68327 * 16 15 14 19 19 H 1.07996 * 120.00005 * 266.07807 * 18 16 15 20 20 C 1.37882 * 120.00079 * 86.07849 * 18 16 15 21 21 N 1.31516 * 119.99869 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 119.99928 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47331 * 60.00029 * 22 20 18 24 24 H 1.48505 * 109.46894 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47310 * 299.99600 * 22 20 18 26 26 C 1.47476 * 111.00251 * 169.99776 * 14 13 12 27 27 H 1.08006 * 120.04326 * 0.02562 * 4 3 2 28 28 H 1.07996 * 119.83547 * 180.02562 * 5 4 3 29 29 H 1.07996 * 119.79365 * 179.74416 * 6 5 4 30 30 H 1.08006 * 119.96299 * 179.97438 * 7 6 5 31 31 H 0.97006 * 119.99562 * 204.84481 * 9 8 7 32 32 H 1.08997 * 109.47762 * 300.00541 * 12 10 9 33 33 H 1.09006 * 109.46921 * 60.00364 * 12 10 9 34 34 H 1.09002 * 109.47443 * 299.99778 * 13 12 10 35 35 H 1.08993 * 109.47480 * 60.00490 * 13 12 10 36 36 H 1.09000 * 113.48062 * 336.06259 * 15 14 13 37 37 H 1.09009 * 113.47874 * 106.53155 * 15 14 13 38 38 H 0.96700 * 113.99715 * 273.83337 * 17 16 15 39 39 H 0.97001 * 119.99957 * 180.02562 * 21 20 18 40 40 H 1.08998 * 113.48339 * 253.47021 * 26 14 13 41 41 H 1.09000 * 113.47305 * 23.88040 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2705 0.5341 1.0833 5 6 4.6488 0.5322 1.0769 6 6 5.3425 0.0029 0.0009 7 6 4.6619 -0.5277 -1.0767 8 6 3.2739 -0.5335 -1.0884 9 7 2.5849 -1.0693 -2.1753 10 6 3.1725 -1.9996 -2.9535 11 8 4.2598 -2.4440 -2.6515 12 6 2.4784 -2.4879 -4.1989 13 6 3.3530 -3.5335 -4.8935 14 7 2.6767 -4.0090 -6.1078 15 6 1.8990 -5.2319 -5.8351 16 6 2.4014 -5.7839 -7.1766 17 8 1.5896 -5.4267 -8.2971 18 6 2.7678 -7.2454 -7.1490 19 1 3.7898 -7.5424 -6.9654 20 6 1.7984 -8.2033 -7.3580 21 7 0.5540 -7.8415 -7.5820 22 14 2.2525 -10.0148 -7.3231 23 1 2.8154 -10.3585 -5.9926 24 1 1.0395 -10.8341 -7.5734 25 1 3.2635 -10.2922 -8.3749 26 6 3.5822 -4.8349 -6.9282 27 1 2.7342 0.9475 1.9247 28 1 5.1905 0.9445 1.9153 29 1 6.4225 0.0096 0.0031 30 1 5.2100 -0.9381 -1.9120 31 1 1.6825 -0.7725 -2.3715 32 1 1.5217 -2.9356 -3.9299 33 1 2.3097 -1.6485 -4.8736 34 1 4.3099 -3.0861 -5.1626 35 1 3.5213 -4.3727 -4.2187 36 1 2.2594 -5.7925 -4.9726 37 1 0.8220 -5.0651 -5.8102 38 1 0.8466 -6.0261 -8.4514 39 1 -0.1281 -8.5154 -7.7287 40 1 3.9319 -4.3317 -7.8296 41 1 4.3925 -5.2886 -6.3575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365293166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:51 Heat of formation + Delta-G solvation = -7.593176 kcal Electronic energy + Delta-G solvation = -24771.171288 eV Core-core repulsion = 21037.693438 eV Total energy + Delta-G solvation = -3733.477850 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.95425 -40.93082 -39.73676 -37.55519 -36.45503 -36.01186 -34.11629 -33.42021 -32.31288 -30.85901 -28.99485 -26.78957 -26.59081 -24.89517 -24.29851 -22.66661 -21.39735 -20.54782 -20.15943 -19.25039 -18.46406 -18.22356 -17.25230 -16.98769 -16.70173 -16.22848 -16.04560 -15.90346 -15.59312 -15.40038 -15.16175 -14.86003 -14.79108 -14.36301 -14.15652 -13.95105 -13.75693 -13.60983 -13.42296 -13.27533 -13.01748 -12.75614 -12.69674 -12.49345 -12.38484 -12.30172 -12.17606 -11.74311 -11.66389 -11.16668 -10.92982 -10.64513 -10.10204 -9.96330 -9.72837 -9.21448 -8.26571 -6.43903 -0.28845 0.29582 1.41185 1.42881 1.43862 1.48513 1.52197 1.75673 1.90705 2.36557 2.76801 2.89366 2.94243 3.15358 3.57031 3.77761 3.84604 3.94265 4.12364 4.22939 4.24139 4.33600 4.35885 4.42060 4.44965 4.52308 4.56848 4.76798 4.88586 4.90013 4.96332 5.10281 5.13989 5.28155 5.37328 5.38591 5.43372 5.54428 5.74604 5.91027 5.96024 6.08536 6.26723 6.35862 6.61538 6.84520 7.29107 7.55723 8.78452 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.021940 B = 0.002388 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.918608 B =11722.381848 C =11976.204987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.272 3.728 3 C -0.081 4.081 4 C -0.042 4.042 5 C -0.133 4.133 6 C -0.060 4.060 7 C -0.156 4.156 8 C 0.186 3.814 9 N -0.668 5.668 10 C 0.526 3.474 11 O -0.537 6.537 12 C -0.122 4.122 13 C 0.036 3.964 14 N -0.470 5.470 15 C -0.012 4.012 16 C 0.218 3.782 17 O -0.582 6.582 18 C -0.559 4.559 19 H 0.065 0.935 20 C 0.026 3.974 21 N -0.919 5.919 22 Si 0.968 3.032 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.271 1.271 26 C 0.013 3.987 27 H 0.160 0.840 28 H 0.169 0.831 29 H 0.157 0.843 30 H 0.138 0.862 31 H 0.420 0.580 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.384 0.616 39 H 0.275 0.725 40 H 0.074 0.926 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.057 17.406 17.241 25.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.042 4.042 3 C -0.087 4.087 4 C -0.062 4.062 5 C -0.151 4.151 6 C -0.079 4.079 7 C -0.176 4.176 8 C 0.088 3.912 9 N -0.312 5.312 10 C 0.316 3.684 11 O -0.413 6.413 12 C -0.162 4.162 13 C -0.094 4.094 14 N -0.192 5.192 15 C -0.142 4.142 16 C 0.177 3.823 17 O -0.394 6.394 18 C -0.597 4.597 19 H 0.083 0.917 20 C -0.173 4.173 21 N -0.560 5.560 22 Si 0.792 3.208 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.196 1.196 26 C -0.116 4.116 27 H 0.177 0.823 28 H 0.186 0.814 29 H 0.174 0.826 30 H 0.156 0.844 31 H 0.258 0.742 32 H 0.120 0.880 33 H 0.142 0.858 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.239 0.761 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.966 18.089 17.016 25.793 hybrid contribution -0.258 -2.071 0.119 2.091 sum 6.708 16.018 17.135 24.396 Atomic orbital electron populations 1.81334 1.12996 1.10628 1.08288 1.25816 0.92692 0.92519 0.93196 1.15860 0.83354 1.12084 0.97421 1.21361 0.94943 0.94606 0.95330 1.21465 0.93157 1.00576 0.99922 1.21672 1.01939 0.92605 0.91655 1.21443 0.91579 1.02584 1.01989 1.17924 0.92185 0.94641 0.86463 1.43553 1.19470 1.40457 1.27723 1.21012 0.85561 0.77313 0.84551 1.90672 1.21963 1.56409 1.72288 1.21461 1.00063 1.01268 0.93455 1.22354 0.97390 0.97624 0.91990 1.68744 1.14325 1.23052 1.13053 1.24542 0.98444 0.90383 1.00825 1.19715 0.88125 0.91136 0.83298 1.86007 1.46002 1.57340 1.50053 1.21825 0.95802 0.91795 1.50245 0.91675 1.25820 0.94554 1.03908 0.93045 1.69358 1.01768 1.35957 1.48928 0.85460 0.77798 0.78650 0.78844 1.19570 1.20501 1.19595 1.23962 0.95942 0.94005 0.97651 0.82268 0.81373 0.82558 0.84434 0.74248 0.88038 0.85848 0.90279 0.94379 0.92386 0.92584 0.76129 0.91535 0.90775 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.02 18.54 19.01 0.35 -10.67 16 2 C 0.27 5.25 14.26 88.33 1.26 6.51 16 3 C -0.08 -1.26 5.75 -21.18 -0.12 -1.38 16 4 C -0.04 -0.40 9.75 22.52 0.22 -0.18 16 5 C -0.13 -0.95 10.02 22.24 0.22 -0.73 16 6 C -0.06 -0.64 10.03 22.30 0.22 -0.41 16 7 C -0.16 -2.74 8.70 22.36 0.19 -2.55 16 8 C 0.19 3.44 6.43 38.57 0.25 3.69 16 9 N -0.67 -13.06 5.15 -302.88 -1.56 -14.62 16 10 C 0.53 12.77 7.63 87.66 0.67 13.44 16 11 O -0.54 -15.91 13.14 -3.04 -0.04 -15.95 16 12 C -0.12 -3.06 6.03 29.85 0.18 -2.88 16 13 C 0.04 1.16 4.11 86.30 0.35 1.51 16 14 N -0.47 -18.74 6.33 -928.33 -5.88 -24.62 16 15 C -0.01 -0.56 7.13 83.57 0.60 0.03 16 16 C 0.22 11.10 1.57 -11.20 -0.02 11.08 16 17 O -0.58 -31.90 13.53 -148.98 -2.02 -33.92 16 18 C -0.56 -29.87 8.70 25.60 0.22 -29.65 16 19 H 0.07 3.39 7.81 -2.91 -0.02 3.37 16 20 C 0.03 1.39 5.39 84.66 0.46 1.84 16 21 N -0.92 -49.47 11.02 21.45 0.24 -49.23 16 22 Si 0.97 41.55 29.54 68.60 2.03 43.58 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 C 0.01 0.57 7.09 83.57 0.59 1.16 16 27 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 28 H 0.17 0.10 8.06 -2.91 -0.02 0.07 16 29 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 30 H 0.14 2.98 5.79 -2.91 -0.02 2.96 16 31 H 0.42 6.87 7.90 -92.70 -0.73 6.13 16 32 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.12 2.66 8.14 -2.38 -0.02 2.65 16 34 H 0.08 2.47 8.04 -2.39 -0.02 2.45 16 35 H 0.04 1.34 7.26 -2.39 -0.02 1.32 16 36 H 0.06 2.64 7.38 -2.39 -0.02 2.62 16 37 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 38 H 0.38 21.56 6.33 -74.06 -0.47 21.09 16 39 H 0.27 13.98 8.31 -92.71 -0.77 13.20 16 40 H 0.07 3.14 8.14 -2.39 -0.02 3.13 16 41 H 0.08 3.07 7.87 -2.39 -0.02 3.05 16 Total: -1.00 -65.80 354.60 -1.69 -67.50 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: -0.11 Total: 36.42 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 5.30 Total: 1.51 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -6.85 Total: -99.14 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -2.06 Total: -49.87 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -65.80 -1.69 -67.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365293166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.903 kcal (2) G-P(sol) polarization free energy of solvation -65.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds