Wall clock time and date at job start Tue Mar 31 2020 10:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39658 * 120.15241 * 300.48811 * 3 2 1 5 5 C 1.37920 * 119.84604 * 179.97438 * 4 3 2 6 6 C 1.38393 * 120.15565 * 359.74190 * 5 4 3 7 7 C 1.38345 * 120.29998 * 0.51214 * 6 5 4 8 8 C 1.50699 * 119.92298 * 179.76578 * 7 6 5 9 9 N 1.46506 * 109.46928 * 269.72684 * 8 7 6 10 10 C 1.34777 * 119.99873 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99754 * 359.97438 * 10 9 8 12 12 C 1.50696 * 120.00137 * 179.97438 * 10 9 8 13 13 N 1.46896 * 109.47452 * 179.97438 * 12 10 9 14 14 C 1.47479 * 111.00216 * 265.97273 * 13 12 10 15 15 C 1.53510 * 87.93014 * 221.29496 * 14 13 12 16 16 O 1.42905 * 114.17012 * 272.37290 * 15 14 13 17 17 C 1.50707 * 114.34164 * 139.68543 * 15 14 13 18 18 H 1.07996 * 119.99829 * 266.07206 * 17 15 14 19 19 C 1.37872 * 120.00161 * 86.07550 * 17 15 14 20 20 N 1.31518 * 120.00257 * 179.97438 * 19 17 15 21 21 Si 1.86800 * 120.00049 * 359.97438 * 19 17 15 22 22 H 1.48500 * 109.47160 * 90.00201 * 21 19 17 23 23 H 1.48504 * 109.47162 * 210.00134 * 21 19 17 24 24 H 1.48506 * 109.47290 * 330.00192 * 21 19 17 25 25 C 1.47479 * 111.00158 * 169.99973 * 13 12 10 26 26 C 1.37968 * 120.15300 * 359.48990 * 7 6 5 27 27 H 1.07994 * 120.07296 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.92661 * 180.02562 * 5 4 3 29 29 H 1.07995 * 119.85513 * 180.27776 * 6 5 4 30 30 H 1.09000 * 109.47247 * 149.72616 * 8 7 6 31 31 H 1.09001 * 109.47358 * 29.72043 * 8 7 6 32 32 H 0.96995 * 120.00050 * 359.72380 * 9 8 7 33 33 H 1.09004 * 109.47043 * 299.99732 * 12 10 9 34 34 H 1.09000 * 109.46978 * 59.99653 * 12 10 9 35 35 H 1.09003 * 113.47627 * 336.06275 * 14 13 12 36 36 H 1.09004 * 113.47601 * 106.52897 * 14 13 12 37 37 H 0.96701 * 114.00132 * 273.84604 * 16 15 14 38 38 H 0.96995 * 119.99652 * 179.97438 * 20 19 17 39 39 H 1.08998 * 113.47366 * 253.47073 * 25 13 12 40 40 H 1.08992 * 113.47563 * 23.87940 * 25 13 12 41 41 H 1.08001 * 120.07834 * 180.23106 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2698 -0.6117 1.0406 5 6 4.6490 -0.6078 1.0340 6 6 5.3375 -0.0036 -0.0034 7 6 4.6487 0.6094 -1.0347 8 6 5.4070 1.2693 -2.1573 9 7 5.6529 2.6739 -1.8211 10 6 6.3193 3.4666 -2.6836 11 8 6.7158 3.0171 -3.7379 12 6 6.5716 4.9116 -2.3380 13 7 7.3110 5.5549 -3.4323 14 6 8.7638 5.5199 -3.1808 15 6 8.8329 6.9612 -3.7046 16 8 9.0040 7.0619 -5.1198 17 6 9.7595 7.8607 -2.9277 18 1 9.3726 8.4703 -2.1246 19 6 11.1011 7.9054 -3.2423 20 7 11.9097 8.6907 -2.5646 21 14 11.7705 6.8505 -4.6310 22 1 11.7006 7.6083 -5.9062 23 1 13.1830 6.4929 -4.3444 24 1 10.9599 5.6115 -4.7465 25 6 7.3700 7.0163 -3.2428 26 6 3.2690 0.6130 -1.0407 27 1 2.7337 -1.0872 1.8486 28 1 5.1929 -1.0814 1.8379 29 1 6.4174 -0.0074 -0.0059 30 1 4.8208 1.2125 -3.0745 31 1 6.3590 0.7585 -2.3023 32 1 5.3322 3.0344 -0.9796 33 1 5.6195 5.4221 -2.1930 34 1 7.1580 4.9687 -1.4210 35 1 9.0197 5.4287 -2.1252 36 1 9.2958 4.8041 -3.8076 37 1 9.9264 7.0269 -5.4079 38 1 12.8536 8.7218 -2.7858 39 1 6.7207 7.5687 -3.9221 40 1 7.2529 7.3245 -2.2040 41 1 2.7325 1.0886 -1.8484 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412968756.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:02 Heat of formation + Delta-G solvation = 3.704421 kcal Electronic energy + Delta-G solvation = -24555.891344 eV Core-core repulsion = 20822.903394 eV Total energy + Delta-G solvation = -3732.987949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.49649 -40.74387 -39.90574 -37.65636 -36.71178 -35.86281 -34.52093 -32.80421 -32.26776 -31.27443 -28.54510 -26.94104 -26.83961 -24.90828 -24.26721 -22.70069 -21.45380 -20.91277 -19.63642 -19.27434 -18.16648 -17.93605 -17.34888 -17.13152 -16.92386 -16.57715 -16.35138 -15.64734 -15.42176 -15.20626 -15.07602 -14.93284 -14.71431 -14.53219 -14.19111 -14.06885 -13.92427 -13.85877 -13.58928 -13.43298 -13.23060 -12.99625 -12.76340 -12.43119 -12.39715 -12.09449 -12.05945 -11.88908 -11.11327 -10.94765 -10.92935 -10.40233 -10.08819 -9.94444 -9.90761 -9.66881 -8.43820 -6.52039 -0.22800 0.24699 1.21888 1.30570 1.36667 1.56908 1.71192 1.83696 2.16300 2.25234 2.79359 2.80834 2.90215 3.14285 3.59486 3.61372 3.84841 3.90208 3.95695 4.09938 4.19721 4.23611 4.26387 4.31451 4.41598 4.57118 4.59273 4.74757 4.82982 4.83324 4.94649 4.99236 5.09017 5.27978 5.32861 5.34453 5.37528 5.44732 5.50986 5.82965 6.02884 6.14232 6.40277 6.52869 6.63117 6.77532 7.15590 7.35113 8.71422 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026669 B = 0.002282 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.641033 B =12265.695743 C =12508.783365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.278 3.722 3 C -0.044 4.044 4 C -0.055 4.055 5 C -0.114 4.114 6 C -0.064 4.064 7 C -0.108 4.108 8 C 0.162 3.838 9 N -0.715 5.715 10 C 0.518 3.482 11 O -0.568 6.568 12 C -0.007 4.007 13 N -0.465 5.465 14 C -0.020 4.020 15 C 0.180 3.820 16 O -0.558 6.558 17 C -0.537 4.537 18 H 0.061 0.939 19 C 0.028 3.972 20 N -0.924 5.924 21 Si 0.915 3.085 22 H -0.256 1.256 23 H -0.282 1.282 24 H -0.247 1.247 25 C 0.028 3.972 26 C -0.051 4.051 27 H 0.152 0.848 28 H 0.163 0.837 29 H 0.146 0.854 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.416 0.584 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.349 0.651 38 H 0.272 0.728 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.559 -20.005 10.348 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.037 4.037 3 C -0.048 4.048 4 C -0.076 4.076 5 C -0.132 4.132 6 C -0.083 4.083 7 C -0.109 4.109 8 C 0.039 3.961 9 N -0.370 5.370 10 C 0.304 3.696 11 O -0.445 6.445 12 C -0.138 4.138 13 N -0.187 5.187 14 C -0.149 4.149 15 C 0.139 3.861 16 O -0.369 6.369 17 C -0.575 4.575 18 H 0.079 0.921 19 C -0.173 4.173 20 N -0.562 5.562 21 Si 0.741 3.259 22 H -0.182 1.182 23 H -0.208 1.208 24 H -0.172 1.172 25 C -0.100 4.100 26 C -0.072 4.072 27 H 0.169 0.831 28 H 0.181 0.819 29 H 0.164 0.836 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.253 0.747 33 H 0.146 0.854 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.201 0.799 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.817 -20.544 9.031 27.455 hybrid contribution 1.659 0.321 0.415 1.740 sum -14.158 -20.222 9.446 26.431 Atomic orbital electron populations 1.81308 1.13644 1.10286 1.09274 1.26020 0.92935 0.92315 0.92388 1.16007 0.83064 1.06337 0.99384 1.21519 0.94933 0.95010 0.96108 1.21420 0.93224 0.99256 0.99282 1.21651 1.01617 0.93161 0.91851 1.19576 0.92781 1.01406 0.97119 1.20142 0.99665 0.80684 0.95560 1.45897 1.58111 1.10494 1.22501 1.20753 0.77022 0.88369 0.83420 1.90703 1.51649 1.76148 1.26020 1.22766 1.02932 0.92704 0.95430 1.68738 1.05558 1.06216 1.38197 1.24818 0.90041 0.99566 1.00493 1.20287 0.95288 0.92102 0.78434 1.86468 1.29592 1.96435 1.24387 1.21466 0.92823 1.25213 1.17961 0.92096 1.25728 0.97342 0.95819 0.98402 1.69982 1.05442 1.38902 1.41847 0.86381 0.78362 0.80815 0.80364 1.18156 1.20810 1.17158 1.23915 0.95554 0.89357 1.01194 1.21149 0.93654 0.95707 0.96694 0.83068 0.81906 0.83594 0.91299 0.90697 0.74732 0.85382 0.88774 0.89989 0.92701 0.79932 0.91840 0.89912 0.88710 0.84705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.14 18.54 19.00 0.35 -9.79 16 2 C 0.28 4.31 15.33 88.33 1.35 5.66 16 3 C -0.04 -0.44 5.73 -21.36 -0.12 -0.56 16 4 C -0.06 -0.30 9.76 22.54 0.22 -0.08 16 5 C -0.11 -0.40 10.03 22.23 0.22 -0.18 16 6 C -0.06 -0.38 9.69 22.33 0.22 -0.16 16 7 C -0.11 -0.99 5.24 -19.90 -0.10 -1.10 16 8 C 0.16 2.37 5.80 85.63 0.50 2.86 16 9 N -0.72 -11.81 5.55 -466.78 -2.59 -14.40 16 10 C 0.52 13.97 7.90 87.66 0.69 14.66 16 11 O -0.57 -21.44 16.43 -3.04 -0.05 -21.49 16 12 C -0.01 -0.18 5.30 85.56 0.45 0.27 16 13 N -0.46 -17.53 5.82 -932.92 -5.43 -22.96 16 14 C -0.02 -0.83 6.55 83.57 0.55 -0.28 16 15 C 0.18 8.47 1.09 -11.20 -0.01 8.46 16 16 O -0.56 -27.84 13.32 -148.98 -1.98 -29.83 16 17 C -0.54 -28.90 9.28 25.60 0.24 -28.66 16 18 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 19 C 0.03 1.53 5.47 84.65 0.46 1.99 16 20 N -0.92 -53.90 13.96 21.45 0.30 -53.60 16 21 Si 0.91 41.65 24.41 68.60 1.67 43.32 16 22 H -0.26 -11.11 7.06 99.48 0.70 -10.40 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 24 H -0.25 -10.97 5.47 99.48 0.54 -10.43 16 25 C 0.03 1.09 7.09 83.57 0.59 1.68 16 26 C -0.05 -0.49 9.41 22.54 0.21 -0.28 16 27 H 0.15 0.30 8.06 -2.91 -0.02 0.28 16 28 H 0.16 -0.22 8.06 -2.91 -0.02 -0.24 16 29 H 0.15 0.58 8.06 -2.91 -0.02 0.56 16 30 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 31 H 0.07 1.20 8.08 -2.39 -0.02 1.18 16 32 H 0.42 4.27 8.46 -92.71 -0.78 3.49 16 33 H 0.13 2.55 8.08 -2.38 -0.02 2.54 16 34 H 0.09 2.12 7.30 -2.39 -0.02 2.10 16 35 H 0.08 3.22 7.38 -2.39 -0.02 3.20 16 36 H 0.05 2.50 7.11 -2.39 -0.02 2.48 16 37 H 0.35 16.65 3.18 -74.06 -0.24 16.42 16 38 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 39 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.09 3.21 7.87 -2.39 -0.02 3.19 16 41 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -76.48 353.59 -2.36 -78.85 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -0.10 Total: 25.61 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: 5.47 Total: 4.28 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -7.37 Total: -100.75 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -2.03 Total: -51.32 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.67 Total: 43.32 kcal Total: -76.48 -2.36 -78.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412968756.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.552 kcal (2) G-P(sol) polarization free energy of solvation -76.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds