Wall clock time and date at job start Tue Mar 31 2020 10:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47306 * 102.21865 * 3 2 1 5 5 N 1.46497 * 109.47289 * 179.97438 * 4 3 2 6 6 C 1.46504 * 120.00095 * 274.96988 * 5 4 3 7 7 C 1.50698 * 109.47143 * 269.99985 * 6 5 4 8 8 H 1.08007 * 119.99782 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00221 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99740 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00173 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.46971 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47205 * 120.00010 * 11 9 7 14 14 H 1.48495 * 109.46697 * 239.99667 * 11 9 7 15 15 C 1.34773 * 120.00177 * 94.96858 * 5 4 3 16 16 O 1.21586 * 120.00030 * 185.67005 * 15 5 4 17 17 C 1.47532 * 119.99914 * 5.39269 * 15 5 4 18 18 C 1.39988 * 120.59285 * 55.25233 * 17 15 5 19 19 C 1.38342 * 118.34437 * 179.75948 * 18 17 15 20 20 C 1.38353 * 119.46141 * 0.49336 * 19 18 17 21 21 C 1.50696 * 119.41195 * 179.74815 * 20 19 18 22 22 C 1.53000 * 117.49568 * 343.76835 * 21 20 19 23 23 C 1.52999 * 117.49836 * 275.11238 * 21 20 19 24 24 N 1.31886 * 121.18416 * 359.76731 * 20 19 18 25 25 C 1.32244 * 121.79997 * 359.97438 * 24 20 19 26 26 O 1.35429 * 119.79866 * 179.97438 * 25 24 20 27 27 H 1.08995 * 109.47598 * 342.21234 * 3 2 1 28 28 H 1.09001 * 109.46914 * 222.21652 * 3 2 1 29 29 H 1.08999 * 109.47231 * 59.99679 * 4 3 2 30 30 H 1.09001 * 109.46960 * 299.99758 * 4 3 2 31 31 H 1.09005 * 109.47034 * 30.00079 * 6 5 4 32 32 H 1.08999 * 109.46967 * 150.00071 * 6 5 4 33 33 H 0.97005 * 119.99483 * 180.02562 * 10 9 7 34 34 H 1.07999 * 120.82442 * 359.96875 * 18 17 15 35 35 H 1.08001 * 120.26515 * 180.26772 * 19 18 17 36 36 H 1.08998 * 115.55467 * 129.43855 * 21 20 19 37 37 H 1.09007 * 117.49886 * 0.02562 * 22 21 20 38 38 H 1.08999 * 117.49903 * 145.02071 * 22 21 20 39 39 H 1.08995 * 117.49754 * 214.98046 * 23 21 20 40 40 H 1.09007 * 117.49566 * 359.97345 * 23 21 20 41 41 H 0.96695 * 113.98966 * 270.01689 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.3062 -1.4098 5 7 4.5829 0.3074 -1.4097 6 6 5.3143 1.5202 -1.0349 7 6 5.5649 2.3557 -2.2638 8 1 5.2147 2.0170 -3.2277 9 6 6.2421 3.5519 -2.1578 10 7 6.6689 3.9641 -0.9841 11 14 6.5521 4.5880 -3.6810 12 1 5.9748 3.9078 -4.8681 13 1 5.9139 5.9183 -3.5131 14 1 8.0144 4.7611 -3.8726 15 6 5.2578 -0.8071 -1.7544 16 8 6.4692 -0.8392 -1.6556 17 6 4.5261 -1.9902 -2.2457 18 6 3.6593 -1.8881 -3.3402 19 6 3.0008 -3.0280 -3.7651 20 6 3.2070 -4.2220 -3.0972 21 6 2.4847 -5.4618 -3.5574 22 6 1.2832 -5.2756 -4.4862 23 6 1.0673 -5.6909 -3.0288 24 7 4.0243 -4.2944 -2.0645 25 6 4.6821 -3.2364 -1.6209 26 8 5.5109 -3.3568 -0.5566 27 1 2.9718 -0.9776 0.3139 28 1 2.9709 0.7619 0.6905 29 1 2.7541 1.2846 -1.7237 30 1 2.7549 -0.4551 -2.1004 31 1 4.7247 2.0937 -0.3196 32 1 6.2669 1.2447 -0.5824 33 1 7.1451 4.8060 -0.9095 34 1 3.5112 -0.9435 -3.8425 35 1 2.3283 -2.9855 -4.6091 36 1 3.1111 -6.3398 -3.7148 37 1 1.0155 -4.2563 -4.7646 38 1 1.1189 -6.0313 -5.2543 39 1 0.7612 -6.7196 -2.8387 40 1 0.6575 -4.9449 -2.3477 41 1 5.0810 -3.2030 0.2958 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417617972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:20 Heat of formation + Delta-G solvation = 22.362169 kcal Electronic energy + Delta-G solvation = -25919.152201 eV Core-core repulsion = 22186.973313 eV Total energy + Delta-G solvation = -3732.178889 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.98658 -39.03581 -37.87493 -36.89372 -36.37748 -35.29319 -33.15516 -32.51810 -30.93014 -30.33133 -27.49612 -25.40883 -24.18666 -23.63366 -22.99251 -22.38439 -21.26794 -19.36556 -18.39401 -17.74400 -17.17529 -16.82800 -16.54800 -16.41581 -15.85378 -15.14768 -15.10610 -14.78332 -14.46535 -14.16510 -13.88800 -13.71777 -13.33796 -12.94663 -12.91075 -12.46675 -12.42285 -12.23582 -12.21381 -11.85190 -11.83561 -11.69738 -11.35523 -11.08801 -10.96365 -10.87674 -10.75708 -10.70666 -10.26274 -9.90029 -9.77551 -9.72744 -9.15683 -8.78341 -8.53028 -7.94047 -6.14938 -4.20262 0.66586 1.01741 2.65583 2.75619 3.04213 3.22703 3.24296 3.32860 3.35027 3.38268 3.56733 3.78619 4.08355 4.19051 4.36145 4.51220 4.57885 4.70979 4.81159 4.85601 4.93892 4.97075 5.09086 5.20438 5.29476 5.31757 5.34590 5.41452 5.50306 5.69448 5.73703 5.77060 5.89872 5.94592 5.98007 6.28289 6.83669 7.26781 7.33546 7.45207 7.51506 7.77459 7.80720 8.08852 8.12073 8.71396 8.87477 9.45758 10.93149 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.003932 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.530347 B = 7118.906101 C = 7633.030247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.216 3.784 3 C -0.048 4.048 4 C 0.109 3.891 5 N -0.590 5.590 6 C 0.244 3.756 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.891 5.891 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.558 3.442 16 O -0.508 6.508 17 C -0.185 4.185 18 C -0.030 4.030 19 C -0.185 4.185 20 C 0.192 3.808 21 C -0.110 4.110 22 C -0.172 4.172 23 C -0.160 4.160 24 N -0.499 5.499 25 C 0.354 3.646 26 O -0.464 6.464 27 H 0.101 0.899 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.264 0.736 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.440 -15.161 -2.593 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.102 4.102 3 C -0.089 4.089 4 C -0.017 4.017 5 N -0.322 5.322 6 C 0.126 3.874 7 C -0.571 4.571 8 H 0.077 0.923 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.342 3.658 16 O -0.382 6.382 17 C -0.192 4.192 18 C -0.056 4.056 19 C -0.205 4.205 20 C 0.053 3.947 21 C -0.129 4.129 22 C -0.209 4.209 23 C -0.198 4.198 24 N -0.218 5.218 25 C 0.175 3.825 26 O -0.270 6.270 27 H 0.119 0.881 28 H 0.138 0.862 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.167 0.833 35 H 0.161 0.839 36 H 0.142 0.858 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -11.746 -15.869 -2.366 19.885 hybrid contribution 0.321 1.560 -0.814 1.789 sum -11.425 -14.309 -3.181 18.585 Atomic orbital electron populations 1.81206 1.12947 1.09249 1.08592 1.29071 0.95077 0.92863 0.93174 1.19829 0.81449 1.05600 1.02047 1.21498 0.82316 1.04210 0.93656 1.48157 1.04827 1.13020 1.66162 1.19417 0.92796 0.78976 0.96238 1.21433 1.37059 1.04446 0.94174 0.92288 1.24911 0.95180 0.97571 0.96217 1.69928 1.38074 1.21998 1.22971 0.86457 0.78187 0.79935 0.82940 1.19784 1.20927 1.20827 1.17740 0.87128 0.81919 0.78985 1.90830 1.13191 1.82117 1.52075 1.21348 1.01134 0.95679 1.01037 1.21725 0.91218 0.99461 0.93227 1.21870 1.03374 0.92777 1.02435 1.20130 0.91642 0.93321 0.89569 1.20809 0.90387 0.96724 1.04960 1.23133 1.00663 1.03446 0.93675 1.22986 0.96851 1.03052 0.96912 1.66879 1.07942 1.32145 1.14816 1.18990 0.87549 0.86107 0.89875 1.84818 1.33791 1.92856 1.15580 0.88065 0.86241 0.88626 0.90376 0.94455 0.93210 0.92627 0.83295 0.83866 0.85844 0.88051 0.87906 0.88073 0.88572 0.74236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.38 18.54 42.15 0.78 -5.60 16 2 C 0.22 2.59 15.43 -20.76 -0.32 2.27 16 3 C -0.05 -0.50 6.02 -29.52 -0.18 -0.68 16 4 C 0.11 1.43 5.21 -4.04 -0.02 1.41 16 5 N -0.59 -10.53 2.46 -176.29 -0.43 -10.96 16 6 C 0.24 5.60 5.23 -5.19 -0.03 5.57 16 7 C -0.53 -13.78 9.39 -34.44 -0.32 -14.11 16 8 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 11 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 12 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.56 10.55 6.80 -12.47 -0.08 10.47 16 16 O -0.51 -12.17 16.38 3.80 0.06 -12.10 16 17 C -0.19 -2.81 4.91 -104.69 -0.51 -3.33 16 18 C -0.03 -0.38 7.63 -38.89 -0.30 -0.68 16 19 C -0.18 -1.96 9.34 -39.50 -0.37 -2.33 16 20 C 0.19 2.23 6.46 -82.53 -0.53 1.70 16 21 C -0.11 -0.98 6.21 -91.77 -0.57 -1.55 16 22 C -0.17 -1.12 9.79 -26.70 -0.26 -1.38 16 23 C -0.16 -1.18 10.24 -26.70 -0.27 -1.46 16 24 N -0.50 -6.99 10.28 -9.21 -0.09 -7.08 16 25 C 0.35 5.28 7.76 -16.61 -0.13 5.15 16 26 O -0.46 -6.78 12.81 -19.47 -0.25 -7.03 16 27 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.10 1.29 8.11 -51.93 -0.42 0.87 16 30 H 0.08 0.89 4.44 -51.93 -0.23 0.66 16 31 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.05 1.32 7.35 -51.93 -0.38 0.94 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.15 1.69 7.62 -52.49 -0.40 1.29 16 35 H 0.14 1.11 6.22 -52.49 -0.33 0.78 16 36 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.10 0.61 6.37 -51.93 -0.33 0.28 16 38 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.77 8.14 -51.92 -0.42 0.34 16 41 H 0.40 3.68 9.06 45.56 0.41 4.09 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -34.53 362.69 -6.93 -41.46 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.18 Total: 1.60 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -4.00 Total: 2.67 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.99 Total: -47.80 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.19 Total: -19.13 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.53 -6.93 -41.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417617972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.823 kcal (2) G-P(sol) polarization free energy of solvation -34.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds