Wall clock time and date at job start Tue Mar 31 2020 10:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.53004 * 109.47306 * 102.21865 * 3 2 1 5 5 N 1.46497 * 109.47289 * 179.97438 * 4 3 2 6 6 C 1.46504 * 120.00095 * 274.96988 * 5 4 3 7 7 C 1.50698 * 109.47143 * 269.99985 * 6 5 4 8 8 H 1.08007 * 119.99782 * 359.97438 * 7 6 5 9 9 C 1.37869 * 120.00221 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99740 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00173 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.46971 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47205 * 120.00010 * 11 9 7 14 14 H 1.48495 * 109.46697 * 239.99667 * 11 9 7 15 15 C 1.34773 * 120.00177 * 94.96858 * 5 4 3 16 16 O 1.21586 * 120.00030 * 185.67005 * 15 5 4 17 17 C 1.47532 * 119.99914 * 5.39269 * 15 5 4 18 18 C 1.39988 * 120.59285 * 55.25233 * 17 15 5 19 19 C 1.38342 * 118.34437 * 179.75948 * 18 17 15 20 20 C 1.38353 * 119.46141 * 0.49336 * 19 18 17 21 21 C 1.50696 * 119.41195 * 179.74815 * 20 19 18 22 22 C 1.53000 * 117.49568 * 343.76835 * 21 20 19 23 23 C 1.52999 * 117.49836 * 275.11238 * 21 20 19 24 24 N 1.31886 * 121.18416 * 359.76731 * 20 19 18 25 25 C 1.32244 * 121.79997 * 359.97438 * 24 20 19 26 26 O 1.35429 * 119.79866 * 179.97438 * 25 24 20 27 27 H 1.08995 * 109.47598 * 342.21234 * 3 2 1 28 28 H 1.09001 * 109.46914 * 222.21652 * 3 2 1 29 29 H 1.08999 * 109.47231 * 59.99679 * 4 3 2 30 30 H 1.09001 * 109.46960 * 299.99758 * 4 3 2 31 31 H 1.09005 * 109.47034 * 30.00079 * 6 5 4 32 32 H 1.08999 * 109.46967 * 150.00071 * 6 5 4 33 33 H 0.97005 * 119.99483 * 180.02562 * 10 9 7 34 34 H 1.07999 * 120.82442 * 359.96875 * 18 17 15 35 35 H 1.08001 * 120.26515 * 180.26772 * 19 18 17 36 36 H 1.08998 * 115.55467 * 129.43855 * 21 20 19 37 37 H 1.09007 * 117.49886 * 0.02562 * 22 21 20 38 38 H 1.08999 * 117.49903 * 145.02071 * 22 21 20 39 39 H 1.08995 * 117.49754 * 214.98046 * 23 21 20 40 40 H 1.09007 * 117.49566 * 359.97345 * 23 21 20 41 41 H 0.96695 * 113.98966 * 270.01689 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1179 0.3062 -1.4098 5 7 4.5829 0.3074 -1.4097 6 6 5.3143 1.5202 -1.0349 7 6 5.5649 2.3557 -2.2638 8 1 5.2147 2.0170 -3.2277 9 6 6.2421 3.5519 -2.1578 10 7 6.6689 3.9641 -0.9841 11 14 6.5521 4.5880 -3.6810 12 1 5.9748 3.9078 -4.8681 13 1 5.9139 5.9183 -3.5131 14 1 8.0144 4.7611 -3.8726 15 6 5.2578 -0.8071 -1.7544 16 8 6.4692 -0.8392 -1.6556 17 6 4.5261 -1.9902 -2.2457 18 6 3.6593 -1.8881 -3.3402 19 6 3.0008 -3.0280 -3.7651 20 6 3.2070 -4.2220 -3.0972 21 6 2.4847 -5.4618 -3.5574 22 6 1.2832 -5.2756 -4.4862 23 6 1.0673 -5.6909 -3.0288 24 7 4.0243 -4.2944 -2.0645 25 6 4.6821 -3.2364 -1.6209 26 8 5.5109 -3.3568 -0.5566 27 1 2.9718 -0.9776 0.3139 28 1 2.9709 0.7619 0.6905 29 1 2.7541 1.2846 -1.7237 30 1 2.7549 -0.4551 -2.1004 31 1 4.7247 2.0937 -0.3196 32 1 6.2669 1.2447 -0.5824 33 1 7.1451 4.8060 -0.9095 34 1 3.5112 -0.9435 -3.8425 35 1 2.3283 -2.9855 -4.6091 36 1 3.1111 -6.3398 -3.7148 37 1 1.0155 -4.2563 -4.7646 38 1 1.1189 -6.0313 -5.2543 39 1 0.7612 -6.7196 -2.8387 40 1 0.6575 -4.9449 -2.3477 41 1 5.0810 -3.2030 0.2958 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417617972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:19 Heat of formation + Delta-G solvation = -2.467388 kcal Electronic energy + Delta-G solvation = -25920.228892 eV Core-core repulsion = 22186.973313 eV Total energy + Delta-G solvation = -3733.255579 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.06665 -40.34149 -38.81036 -38.03076 -37.22547 -36.71781 -34.92705 -33.71049 -32.22652 -31.37474 -29.20307 -26.53828 -25.50040 -24.66660 -24.39393 -23.02432 -22.13421 -20.71629 -19.43555 -18.90265 -18.41729 -18.10139 -18.05256 -17.51993 -17.15997 -16.35547 -16.10719 -15.83770 -15.76601 -15.47169 -15.11019 -14.70858 -14.50799 -14.21797 -14.07702 -13.87301 -13.64037 -13.52390 -13.26550 -12.99257 -12.96765 -12.82742 -12.72545 -12.54893 -12.25806 -12.18726 -12.00921 -11.65591 -11.58802 -11.33520 -11.05645 -10.81535 -10.58437 -10.41663 -9.81757 -9.51950 -8.18023 -6.30335 -0.35713 0.04467 1.40793 1.43862 1.53608 1.56972 1.77933 1.79068 2.12491 2.37656 2.45233 2.46561 3.01095 3.04235 3.14678 3.34372 3.60110 3.74840 3.93518 3.96464 3.99153 4.05814 4.09344 4.19896 4.40838 4.43385 4.54517 4.74916 4.81372 4.81762 4.92116 4.96001 5.07848 5.10947 5.22566 5.29506 5.33461 5.42167 5.57325 5.84506 6.11150 6.50536 6.54218 6.62735 6.78797 6.81957 7.26079 7.43031 8.89176 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.003932 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.530347 B = 7118.906101 C = 7633.030247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C 0.243 3.757 3 C -0.038 4.038 4 C 0.107 3.893 5 N -0.585 5.585 6 C 0.259 3.741 7 C -0.542 4.542 8 H 0.058 0.942 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.958 3.042 12 H -0.265 1.265 13 H -0.273 1.273 14 H -0.287 1.287 15 C 0.561 3.439 16 O -0.571 6.571 17 C -0.203 4.203 18 C -0.028 4.028 19 C -0.172 4.172 20 C 0.193 3.807 21 C -0.132 4.132 22 C -0.152 4.152 23 C -0.159 4.159 24 N -0.517 5.517 25 C 0.349 3.651 26 O -0.485 6.485 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.041 0.959 32 H 0.006 0.994 33 H 0.265 0.735 34 H 0.162 0.838 35 H 0.180 0.820 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.849 -16.192 -4.489 21.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C -0.074 4.074 3 C -0.079 4.079 4 C -0.017 4.017 5 N -0.315 5.315 6 C 0.138 3.862 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.187 4.187 10 N -0.564 5.564 11 Si 0.784 3.216 12 H -0.189 1.189 13 H -0.199 1.199 14 H -0.214 1.214 15 C 0.348 3.652 16 O -0.450 6.450 17 C -0.210 4.210 18 C -0.054 4.054 19 C -0.191 4.191 20 C 0.055 3.945 21 C -0.151 4.151 22 C -0.189 4.189 23 C -0.197 4.197 24 N -0.236 5.236 25 C 0.169 3.831 26 O -0.295 6.295 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.059 0.941 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.179 0.821 35 H 0.198 0.802 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.108 0.892 41 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -14.225 -16.910 -4.254 22.503 hybrid contribution 1.024 1.769 -0.224 2.057 sum -13.201 -15.140 -4.478 20.580 Atomic orbital electron populations 1.81242 1.14047 1.10729 1.09758 1.29037 0.94841 0.91555 0.92003 1.19759 0.80514 1.07138 1.00493 1.21698 0.79139 1.05028 0.95860 1.47972 1.06682 1.11380 1.65461 1.18906 0.91651 0.80449 0.95181 1.21776 1.36606 1.04723 0.94950 0.92390 1.25717 0.95140 0.98965 0.98873 1.70033 1.39014 1.22536 1.24854 0.85504 0.77613 0.78711 0.79818 1.18906 1.19877 1.21356 1.18240 0.86506 0.82765 0.77666 1.90789 1.16059 1.83363 1.54793 1.20976 1.03004 0.94003 1.03039 1.21908 0.90439 1.00827 0.92190 1.22205 1.02825 0.91398 1.02668 1.20745 0.90472 0.94896 0.88404 1.20883 0.91082 0.95696 1.07409 1.23289 0.97566 1.04613 0.93430 1.23060 0.95132 1.03740 0.97747 1.66972 1.08867 1.31668 1.16095 1.19051 0.87712 0.86239 0.90062 1.84761 1.34965 1.92935 1.16807 0.85791 0.85701 0.88819 0.88143 0.94093 0.97546 0.92560 0.82099 0.80246 0.85845 0.87030 0.86070 0.86845 0.89220 0.72148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -13.07 18.54 20.01 0.37 -12.70 16 2 C 0.24 5.35 15.43 89.44 1.38 6.74 16 3 C -0.04 -0.73 6.02 28.79 0.17 -0.56 16 4 C 0.11 2.65 5.21 86.38 0.45 3.10 16 5 N -0.59 -21.03 2.46 -829.92 -2.04 -23.06 16 6 C 0.26 12.22 5.23 85.63 0.45 12.67 16 7 C -0.54 -28.43 9.39 25.60 0.24 -28.19 16 8 H 0.06 2.98 7.81 -2.91 -0.02 2.96 16 9 C 0.01 0.67 5.46 84.65 0.46 1.13 16 10 N -0.92 -52.69 13.29 21.44 0.28 -52.41 16 11 Si 0.96 42.62 29.54 68.60 2.03 44.65 16 12 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 14 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 15 C 0.56 21.68 6.80 86.69 0.59 22.27 16 16 O -0.57 -28.74 16.38 -2.56 -0.04 -28.79 16 17 C -0.20 -6.06 4.91 -19.91 -0.10 -6.16 16 18 C -0.03 -0.64 7.63 22.72 0.17 -0.46 16 19 C -0.17 -3.07 9.34 22.32 0.21 -2.86 16 20 C 0.19 4.03 6.46 42.58 0.28 4.30 16 21 C -0.13 -1.96 6.21 -11.54 -0.07 -2.04 16 22 C -0.15 -1.35 9.79 30.62 0.30 -1.05 16 23 C -0.16 -1.85 10.24 30.62 0.31 -1.53 16 24 N -0.52 -13.88 10.28 -296.05 -3.04 -16.92 16 25 C 0.35 10.27 7.76 85.13 0.66 10.93 16 26 O -0.49 -14.49 12.81 -85.82 -1.10 -15.59 16 27 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.09 2.40 8.11 -2.39 -0.02 2.38 16 30 H 0.10 2.06 4.44 -2.39 -0.01 2.05 16 31 H 0.04 1.89 8.07 -2.38 -0.02 1.87 16 32 H 0.01 0.36 7.35 -2.39 -0.02 0.34 16 33 H 0.27 14.32 8.31 -92.70 -0.77 13.55 16 34 H 0.16 3.22 7.62 -2.91 -0.02 3.20 16 35 H 0.18 1.87 6.22 -2.91 -0.02 1.85 16 36 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.11 0.78 6.37 -2.38 -0.02 0.76 16 38 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.42 7.90 9.06 -74.06 -0.67 7.23 16 Total: -1.00 -77.57 362.69 2.38 -75.18 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.42 Total: 11.33 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 5.50 Total: 18.30 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -4.43 Total: -105.09 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -1.14 Total: -44.37 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -77.57 2.38 -75.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417617972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.717 kcal (2) G-P(sol) polarization free energy of solvation -77.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds