Wall clock time and date at job start Tue Mar 31 2020 11:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38262 * 119.98510 * 2 1 4 4 C 1.38226 * 120.05197 * 180.02562 * 3 2 1 5 5 C 1.38226 * 120.02288 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.01009 * 179.97438 * 5 4 3 7 7 N 1.46904 * 109.47174 * 260.01992 * 6 5 4 8 8 C 1.46905 * 110.99762 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46672 * 180.02562 * 8 7 6 10 10 C 1.38300 * 119.93089 * 269.72657 * 9 8 7 11 11 C 1.38097 * 120.06739 * 179.72664 * 10 9 8 12 12 C 1.38879 * 119.93209 * 0.56925 * 11 10 9 13 13 O 1.35755 * 120.07085 * 179.68021 * 12 11 10 14 14 C 1.34833 * 116.99846 * 174.48519 * 13 12 11 15 15 H 1.08001 * 119.99968 * 5.06325 * 14 13 12 16 16 C 1.38651 * 119.99866 * 185.05836 * 14 13 12 17 17 N 1.31560 * 119.99861 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00019 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46902 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46870 * 120.00098 * 18 16 14 21 21 H 1.48496 * 109.46951 * 240.00064 * 18 16 14 22 22 C 1.38880 * 119.85919 * 359.70660 * 12 11 10 23 23 C 1.38096 * 119.93519 * 359.97438 * 22 12 11 24 24 C 1.38435 * 119.97409 * 0.02562 * 5 4 3 25 25 F 1.35095 * 120.02498 * 179.97438 * 24 5 4 26 26 C 1.38178 * 119.98721 * 180.21270 * 2 1 3 27 27 H 1.08999 * 109.47068 * 90.00082 * 1 2 3 28 28 H 1.09000 * 109.47180 * 210.00006 * 1 2 3 29 29 H 1.08992 * 109.46978 * 330.00084 * 1 2 3 30 30 H 1.08004 * 119.97810 * 359.97299 * 3 2 1 31 31 H 1.08001 * 119.98982 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47715 * 20.02318 * 6 5 4 33 33 H 1.08999 * 109.47315 * 140.02379 * 6 5 4 34 34 H 1.00904 * 110.99801 * 56.05173 * 7 6 5 35 35 H 1.08995 * 109.47216 * 299.99853 * 8 7 6 36 36 H 1.08993 * 109.47215 * 60.00619 * 8 7 6 37 37 H 1.07997 * 119.96450 * 359.97438 * 10 9 8 38 38 H 1.08004 * 120.03588 * 180.27062 * 11 10 9 39 39 H 0.97001 * 119.99389 * 180.02562 * 17 16 14 40 40 H 1.08009 * 120.03265 * 179.97438 * 22 12 11 41 41 H 1.07993 * 119.97147 * 180.02562 * 23 22 12 42 42 H 1.08004 * 120.01109 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5803 1.1992 -0.0005 5 6 4.2733 0.0032 -0.0005 6 6 5.7803 0.0053 -0.0017 7 7 6.2692 -0.2347 -1.3660 8 6 7.7377 -0.2400 -1.4056 9 6 8.2012 -0.4879 -2.8180 10 6 8.4202 -1.7814 -3.2555 11 6 8.8394 -2.0121 -4.5509 12 6 9.0526 -0.9428 -5.4110 13 8 9.4711 -1.1660 -6.6830 14 6 9.5486 -0.0951 -7.4987 15 1 9.3628 0.8949 -7.1092 16 6 9.8669 -0.2650 -8.8374 17 7 10.0928 -1.4711 -9.3119 18 14 9.9750 1.2186 -9.9673 19 1 9.6799 2.4519 -9.1945 20 1 11.3434 1.3079 -10.5375 21 1 8.9885 1.0756 -11.0679 22 6 8.8374 0.3553 -4.9669 23 6 8.4117 0.5792 -3.6724 24 6 3.5825 -1.1965 -0.0005 25 9 4.2588 -2.3660 -0.0011 26 6 2.1977 -1.1968 -0.0044 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6575 2.1326 -0.0004 31 1 4.1191 2.1352 -0.0010 32 1 6.1426 0.9715 0.3494 33 1 6.1452 -0.7814 0.6586 34 1 5.8923 0.4447 -2.0099 35 1 8.1139 0.7242 -1.0641 36 1 8.1158 -1.0287 -0.7552 37 1 8.2592 -2.6123 -2.5845 38 1 9.0061 -3.0228 -4.8933 39 1 10.3159 -1.5898 -10.2484 40 1 9.0027 1.1891 -5.6334 41 1 8.2438 1.5884 -3.3266 42 1 1.6577 -2.1321 -0.0083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473992112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:04 Heat of formation + Delta-G solvation = -30.296043 kcal Electronic energy + Delta-G solvation = -24252.894604 eV Core-core repulsion = 20498.512323 eV Total energy + Delta-G solvation = -3754.382282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.89302 -39.56810 -39.02967 -37.12054 -35.67066 -33.13101 -32.23007 -30.77927 -30.17420 -29.97780 -27.84353 -25.61144 -24.60295 -23.20911 -23.07548 -21.92010 -21.16539 -20.37790 -17.96666 -17.27765 -17.00664 -16.78497 -16.20018 -15.75701 -15.15911 -14.82797 -14.62265 -14.50106 -14.31804 -14.11645 -13.90335 -13.70125 -13.54208 -13.51368 -13.13389 -12.83416 -12.66152 -12.38652 -12.26565 -11.93826 -11.89479 -11.65447 -11.51545 -11.28744 -11.16355 -10.77381 -10.60201 -10.55776 -10.40603 -9.31132 -9.14652 -8.84603 -8.74348 -8.36179 -8.13756 -7.15967 -6.43928 -4.02663 0.89359 0.98624 2.25723 2.31210 3.12431 3.13965 3.19585 3.28937 3.97359 4.08269 4.26710 4.44900 4.46551 4.63633 4.73574 4.85975 5.01508 5.11346 5.19176 5.24058 5.24378 5.31734 5.32128 5.41470 5.46845 5.52031 5.72328 5.75017 5.83615 5.86515 5.92512 5.93828 6.11296 6.20323 6.24437 6.45845 6.68067 6.73843 6.92033 7.01335 7.09309 7.29097 7.36397 7.45389 7.49216 7.85986 8.01382 9.01836 9.72678 10.74263 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017828 B = 0.002343 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.217346 B =11947.458312 C =12473.284752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.059 4.059 3 C -0.135 4.135 4 C -0.082 4.082 5 C -0.124 4.124 6 C 0.099 3.901 7 N -0.679 5.679 8 C 0.119 3.881 9 C -0.185 4.185 10 C -0.051 4.051 11 C -0.194 4.194 12 C 0.156 3.844 13 O -0.178 6.178 14 C -0.391 4.391 15 H 0.092 0.908 16 C 0.038 3.962 17 N -0.863 5.863 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.276 1.276 21 H -0.276 1.276 22 C -0.235 4.235 23 C -0.065 4.065 24 C 0.130 3.870 25 F -0.130 7.130 26 C -0.161 4.161 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.343 0.657 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.269 0.731 40 H 0.126 0.874 41 H 0.102 0.898 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.180 5.642 20.094 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.060 4.060 3 C -0.153 4.153 4 C -0.101 4.101 5 C -0.125 4.125 6 C -0.030 4.030 7 N -0.310 5.310 8 C -0.009 4.009 9 C -0.186 4.186 10 C -0.070 4.070 11 C -0.214 4.214 12 C 0.102 3.898 13 O -0.082 6.082 14 C -0.467 4.467 15 H 0.109 0.891 16 C -0.166 4.166 17 N -0.498 5.498 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.201 1.201 22 C -0.254 4.254 23 C -0.084 4.084 24 C 0.110 3.890 25 F -0.108 7.108 26 C -0.180 4.180 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.161 0.839 35 H 0.046 0.954 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.143 0.857 41 H 0.120 0.880 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.045 4.598 19.802 25.290 hybrid contribution 0.357 1.516 -0.571 1.659 sum -14.687 6.114 19.231 24.958 Atomic orbital electron populations 1.20819 0.90574 1.03012 1.02795 1.19744 0.96323 0.92279 0.97638 1.21034 0.94019 0.97750 1.02504 1.20952 0.94119 0.97010 0.97979 1.19888 0.96377 0.92081 1.04143 1.20780 0.89338 1.00515 0.92352 1.60600 1.08575 1.56184 1.05664 1.20629 0.86164 0.99382 0.94692 1.19093 1.10475 0.93570 0.95472 1.20478 0.96509 0.95636 0.94333 1.20232 1.09699 0.97624 0.93802 1.19407 0.91141 0.92854 0.86366 1.83984 1.72250 1.35714 1.16220 1.21369 1.49418 0.86202 0.89740 0.89058 1.25295 0.96610 0.98295 0.96391 1.70054 1.43598 1.21010 1.15096 0.85648 0.78278 0.79817 0.79674 1.19140 1.20160 1.20135 1.21111 1.10235 0.97116 0.96956 1.20578 0.97587 0.97085 0.93180 1.17475 0.89617 0.81254 1.00686 1.91525 1.80264 1.45626 1.93396 1.21029 0.92266 0.99343 1.05340 0.90681 0.91308 0.91212 0.85494 0.85258 0.94181 0.90061 0.83856 0.95368 0.91021 0.87017 0.86552 0.92086 0.85653 0.87963 0.84861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 10.01 36.01 0.36 -0.30 16 2 C -0.06 -0.50 5.88 -104.63 -0.62 -1.12 16 3 C -0.13 -1.09 9.70 -39.58 -0.38 -1.48 16 4 C -0.08 -0.73 9.67 -39.59 -0.38 -1.11 16 5 C -0.12 -1.33 5.40 -104.56 -0.56 -1.90 16 6 C 0.10 1.07 5.54 -4.98 -0.03 1.05 16 7 N -0.68 -8.95 6.48 -116.34 -0.75 -9.71 16 8 C 0.12 1.63 5.81 -4.97 -0.03 1.61 16 9 C -0.18 -3.20 5.40 -104.57 -0.56 -3.76 16 10 C -0.05 -0.95 9.69 -39.61 -0.38 -1.33 16 11 C -0.19 -4.23 9.99 -39.40 -0.39 -4.63 16 12 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 13 O -0.18 -5.17 9.76 0.03 0.00 -5.17 16 14 C -0.39 -11.04 9.49 30.88 0.29 -10.75 16 15 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 16 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 17 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 18 Si 0.94 20.67 29.55 -169.99 -5.02 15.64 16 19 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 20 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 22 C -0.23 -5.16 9.17 -39.40 -0.36 -5.52 16 23 C -0.07 -1.20 9.69 -39.61 -0.38 -1.58 16 24 C 0.13 1.52 7.25 -39.42 -0.29 1.24 16 25 F -0.13 -1.76 16.66 2.25 0.04 -1.72 16 26 C -0.16 -1.59 9.68 -39.51 -0.38 -1.97 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 31 H 0.13 0.91 8.04 -52.49 -0.42 0.48 16 32 H 0.04 0.37 8.00 -51.93 -0.42 -0.04 16 33 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 34 H 0.34 4.54 8.72 -39.29 -0.34 4.20 16 35 H 0.03 0.35 8.08 -51.93 -0.42 -0.07 16 36 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 40 H 0.13 2.76 5.64 -52.48 -0.30 2.46 16 41 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 42 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 364.57 15.07 5.49 5.49 Total: -1.00 -31.52 364.57 -9.46 -40.98 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.51 Total: 6.26 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -4.46 Total: -27.00 kcal Atomic # 7 Polarization: -34.49 SS G_CDS: 0.00 Total: -34.49 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: 0.00 Total: -5.17 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.52 -9.46 -40.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473992112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.683 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds