Wall clock time and date at job start Tue Mar 31 2020 11:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38262 * 119.98510 * 2 1 4 4 C 1.38226 * 120.05197 * 180.02562 * 3 2 1 5 5 C 1.38226 * 120.02288 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.01009 * 179.97438 * 5 4 3 7 7 N 1.46904 * 109.47174 * 260.01992 * 6 5 4 8 8 C 1.46905 * 110.99762 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46672 * 180.02562 * 8 7 6 10 10 C 1.38300 * 119.93089 * 269.72657 * 9 8 7 11 11 C 1.38097 * 120.06739 * 179.72664 * 10 9 8 12 12 C 1.38879 * 119.93209 * 0.56925 * 11 10 9 13 13 O 1.35755 * 120.07085 * 179.68021 * 12 11 10 14 14 C 1.34833 * 116.99846 * 174.48519 * 13 12 11 15 15 H 1.08001 * 119.99968 * 5.06325 * 14 13 12 16 16 C 1.38651 * 119.99866 * 185.05836 * 14 13 12 17 17 N 1.31560 * 119.99861 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00019 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46902 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46870 * 120.00098 * 18 16 14 21 21 H 1.48496 * 109.46951 * 240.00064 * 18 16 14 22 22 C 1.38880 * 119.85919 * 359.70660 * 12 11 10 23 23 C 1.38096 * 119.93519 * 359.97438 * 22 12 11 24 24 C 1.38435 * 119.97409 * 0.02562 * 5 4 3 25 25 F 1.35095 * 120.02498 * 179.97438 * 24 5 4 26 26 C 1.38178 * 119.98721 * 180.21270 * 2 1 3 27 27 H 1.08999 * 109.47068 * 90.00082 * 1 2 3 28 28 H 1.09000 * 109.47180 * 210.00006 * 1 2 3 29 29 H 1.08992 * 109.46978 * 330.00084 * 1 2 3 30 30 H 1.08004 * 119.97810 * 359.97299 * 3 2 1 31 31 H 1.08001 * 119.98982 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.47715 * 20.02318 * 6 5 4 33 33 H 1.08999 * 109.47315 * 140.02379 * 6 5 4 34 34 H 1.00904 * 110.99801 * 56.05173 * 7 6 5 35 35 H 1.08995 * 109.47216 * 299.99853 * 8 7 6 36 36 H 1.08993 * 109.47215 * 60.00619 * 8 7 6 37 37 H 1.07997 * 119.96450 * 359.97438 * 10 9 8 38 38 H 1.08004 * 120.03588 * 180.27062 * 11 10 9 39 39 H 0.97001 * 119.99389 * 180.02562 * 17 16 14 40 40 H 1.08009 * 120.03265 * 179.97438 * 22 12 11 41 41 H 1.07993 * 119.97147 * 180.02562 * 23 22 12 42 42 H 1.08004 * 120.01109 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1981 1.1976 0.0000 4 6 3.5803 1.1992 -0.0005 5 6 4.2733 0.0032 -0.0005 6 6 5.7803 0.0053 -0.0017 7 7 6.2692 -0.2347 -1.3660 8 6 7.7377 -0.2400 -1.4056 9 6 8.2012 -0.4879 -2.8180 10 6 8.4202 -1.7814 -3.2555 11 6 8.8394 -2.0121 -4.5509 12 6 9.0526 -0.9428 -5.4110 13 8 9.4711 -1.1660 -6.6830 14 6 9.5486 -0.0951 -7.4987 15 1 9.3628 0.8949 -7.1092 16 6 9.8669 -0.2650 -8.8374 17 7 10.0928 -1.4711 -9.3119 18 14 9.9750 1.2186 -9.9673 19 1 9.6799 2.4519 -9.1945 20 1 11.3434 1.3079 -10.5375 21 1 8.9885 1.0756 -11.0679 22 6 8.8374 0.3553 -4.9669 23 6 8.4117 0.5792 -3.6724 24 6 3.5825 -1.1965 -0.0005 25 9 4.2588 -2.3660 -0.0011 26 6 2.1977 -1.1968 -0.0044 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5138 30 1 1.6575 2.1326 -0.0004 31 1 4.1191 2.1352 -0.0010 32 1 6.1426 0.9715 0.3494 33 1 6.1452 -0.7814 0.6586 34 1 5.8923 0.4447 -2.0099 35 1 8.1139 0.7242 -1.0641 36 1 8.1158 -1.0287 -0.7552 37 1 8.2592 -2.6123 -2.5845 38 1 9.0061 -3.0228 -4.8933 39 1 10.3159 -1.5898 -10.2484 40 1 9.0027 1.1891 -5.6334 41 1 8.2438 1.5884 -3.3266 42 1 1.6577 -2.1321 -0.0083 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473992112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:03 Heat of formation + Delta-G solvation = -48.564636 kcal Electronic energy + Delta-G solvation = -24253.686790 eV Core-core repulsion = 20498.512323 eV Total energy + Delta-G solvation = -3755.174467 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.79770 -40.80396 -40.22701 -38.67719 -36.83876 -34.39462 -33.80219 -31.79629 -31.47773 -31.25327 -28.80584 -27.44893 -25.77507 -24.22269 -23.78230 -23.59918 -22.02780 -21.81344 -19.84905 -18.88732 -17.99611 -17.65111 -17.10961 -16.65126 -16.49962 -16.32900 -15.98428 -15.72500 -15.56245 -15.40384 -15.17175 -14.97489 -14.47284 -14.41234 -14.32237 -14.07788 -13.97408 -13.58240 -13.50658 -13.05271 -12.93415 -12.71501 -12.63353 -12.42828 -12.31368 -12.24248 -12.12054 -12.05862 -11.79281 -11.17054 -10.80702 -9.84600 -9.77714 -9.51497 -9.30523 -8.90282 -8.47277 -6.15589 0.18270 0.28130 0.60682 0.68586 1.34756 1.43439 1.53513 2.17584 2.57316 2.81092 3.12663 3.36275 3.52442 3.53850 3.73961 3.79227 4.01136 4.05503 4.07472 4.19774 4.24440 4.37305 4.46852 4.57785 4.61434 4.63668 4.70650 4.74836 4.81559 4.84338 4.89388 5.09400 5.14379 5.15442 5.22461 5.29255 5.31256 5.41068 5.57366 5.57573 5.71282 5.81226 5.97931 6.03020 6.06994 6.24536 6.43791 6.97390 7.78844 8.76416 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.017828 B = 0.002343 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.217346 B =11947.458312 C =12473.284752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.062 4.062 3 C -0.134 4.134 4 C -0.082 4.082 5 C -0.137 4.137 6 C 0.104 3.896 7 N -0.693 5.693 8 C 0.124 3.876 9 C -0.158 4.158 10 C -0.050 4.050 11 C -0.208 4.208 12 C 0.114 3.886 13 O -0.234 6.234 14 C -0.412 4.412 15 H 0.103 0.897 16 C -0.025 4.025 17 N -0.922 5.922 18 Si 1.021 2.979 19 H -0.250 1.250 20 H -0.268 1.268 21 H -0.269 1.269 22 C -0.242 4.242 23 C -0.060 4.060 24 C 0.097 3.903 25 F -0.149 7.149 26 C -0.173 4.173 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.154 0.846 31 H 0.152 0.848 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.343 0.657 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.139 0.861 38 H 0.109 0.891 39 H 0.272 0.728 40 H 0.120 0.880 41 H 0.142 0.858 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.930 8.681 22.569 29.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.062 4.062 3 C -0.152 4.152 4 C -0.101 4.101 5 C -0.138 4.138 6 C -0.024 4.024 7 N -0.325 5.325 8 C -0.004 4.004 9 C -0.159 4.159 10 C -0.068 4.068 11 C -0.227 4.227 12 C 0.064 3.936 13 O -0.141 6.141 14 C -0.489 4.489 15 H 0.120 0.880 16 C -0.223 4.223 17 N -0.561 5.561 18 Si 0.840 3.160 19 H -0.173 1.173 20 H -0.193 1.193 21 H -0.194 1.194 22 C -0.261 4.261 23 C -0.078 4.078 24 C 0.078 3.922 25 F -0.128 7.128 26 C -0.192 4.192 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.172 0.828 31 H 0.170 0.830 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.162 0.838 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.156 0.844 38 H 0.127 0.873 39 H 0.081 0.919 40 H 0.137 0.863 41 H 0.160 0.840 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.816 7.643 22.349 28.994 hybrid contribution 0.723 0.553 -0.958 1.321 sum -16.094 8.196 21.391 27.996 Atomic orbital electron populations 1.20885 0.88637 1.04195 1.03412 1.20116 0.97803 0.91875 0.96434 1.21423 0.94016 0.98709 1.01056 1.21250 0.94662 0.97129 0.97043 1.19983 0.96415 0.92376 1.05069 1.20754 0.89481 1.01431 0.90746 1.60493 1.07925 1.56818 1.07227 1.20614 0.86836 1.01140 0.91812 1.19614 1.06640 0.92533 0.97121 1.20830 0.95278 0.97510 0.93187 1.20451 1.10274 0.96961 0.95030 1.19937 0.93064 0.94922 0.85722 1.83948 1.75314 1.36641 1.18160 1.21875 1.49758 0.86755 0.90468 0.88014 1.26633 0.95920 1.01864 0.97842 1.70203 1.46276 1.23860 1.15717 0.84505 0.78585 0.75861 0.77078 1.17324 1.19322 1.19379 1.21237 1.10515 0.95770 0.98607 1.20959 0.95896 0.99426 0.91519 1.17867 0.90507 0.81146 1.02706 1.91466 1.80727 1.46739 1.93838 1.21244 0.91850 1.00504 1.05588 0.90204 0.90725 0.89535 0.82829 0.83043 0.91884 0.90688 0.83827 0.92888 0.90059 0.84367 0.87262 0.91862 0.86262 0.84019 0.84289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 71.24 0.71 -0.28 16 2 C -0.06 -0.90 5.88 -19.87 -0.12 -1.01 16 3 C -0.13 -1.74 9.70 22.27 0.22 -1.52 16 4 C -0.08 -1.20 9.67 22.26 0.22 -0.99 16 5 C -0.14 -2.67 5.40 -19.82 -0.11 -2.77 16 6 C 0.10 1.95 5.54 85.55 0.47 2.43 16 7 N -0.69 -16.06 6.48 -521.98 -3.38 -19.44 16 8 C 0.12 2.89 5.81 85.56 0.50 3.39 16 9 C -0.16 -5.01 5.40 -19.83 -0.11 -5.11 16 10 C -0.05 -1.78 9.69 22.25 0.22 -1.56 16 11 C -0.21 -9.32 9.99 22.39 0.22 -9.09 16 12 C 0.11 5.84 6.65 22.58 0.15 5.99 16 13 O -0.23 -14.44 9.76 -22.82 -0.22 -14.66 16 14 C -0.41 -24.40 9.49 67.92 0.64 -23.76 16 15 H 0.10 5.51 5.20 -2.91 -0.02 5.49 16 16 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 17 N -0.92 -57.56 13.67 21.61 0.30 -57.27 16 18 Si 1.02 43.29 29.55 68.60 2.03 45.32 16 19 H -0.25 -9.72 7.11 99.48 0.71 -9.02 16 20 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 21 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 22 C -0.24 -10.64 9.17 22.39 0.21 -10.44 16 23 C -0.06 -2.03 9.69 22.25 0.22 -1.81 16 24 C 0.10 2.21 7.25 22.37 0.16 2.37 16 25 F -0.15 -4.04 16.66 44.97 0.75 -3.29 16 26 C -0.17 -3.24 9.68 22.31 0.22 -3.03 16 27 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 29 H 0.09 0.47 8.08 -2.39 -0.02 0.45 16 30 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.15 1.47 8.04 -2.91 -0.02 1.45 16 32 H 0.06 0.90 8.00 -2.39 -0.02 0.88 16 33 H 0.07 1.50 7.95 -2.39 -0.02 1.48 16 34 H 0.34 7.93 8.72 -89.69 -0.78 7.14 16 35 H 0.05 1.03 8.08 -2.39 -0.02 1.01 16 36 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 37 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 38 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 40 H 0.12 5.30 5.64 -2.91 -0.02 5.29 16 41 H 0.14 3.74 8.06 -2.91 -0.02 3.71 16 42 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -73.97 364.57 4.01 -69.96 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.26 Total: 27.60 kcal Atomic # 6 Polarization: -52.49 SS G_CDS: 4.28 Total: -48.21 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -3.09 Total: -76.71 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.22 Total: -14.66 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.75 Total: -3.29 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -73.97 4.01 -69.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473992112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.396 kcal (2) G-P(sol) polarization free energy of solvation -73.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds