Wall clock time and date at job start Tue Mar 31 2020 10:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.97410 * 124.71196 * 10 9 7 12 12 C 1.35237 * 107.86631 * 179.87309 * 11 10 9 13 13 C 1.40429 * 107.86452 * 0.38685 * 12 11 10 14 14 N 1.40072 * 125.97960 * 179.78256 * 13 12 11 15 15 C 1.34783 * 119.99547 * 359.97438 * 14 13 12 16 16 O 1.21708 * 120.00336 * 0.02562 * 15 14 13 17 17 C 1.46631 * 119.99605 * 179.97438 * 15 14 13 18 18 C 1.36792 * 125.95599 * 180.02562 * 17 15 14 19 19 C 1.39649 * 106.53156 * 179.97438 * 18 17 15 20 20 C 1.35572 * 107.41914 * 0.04835 * 19 18 17 21 21 O 1.33506 * 108.60979 * 359.68370 * 20 19 18 22 22 C 1.50999 * 123.79570 * 179.82205 * 20 19 18 23 23 C 1.53324 * 108.41615 * 343.31146 * 22 20 19 24 24 C 1.53106 * 109.55224 * 50.16954 * 23 22 20 25 25 C 1.50699 * 128.11888 * 180.12499 * 19 18 17 26 26 N 1.31237 * 108.04636 * 359.76378 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.08004 * 126.07280 * 0.02562 * 11 10 9 31 31 H 1.08003 * 126.07353 * 180.15179 * 12 11 10 32 32 H 0.96995 * 120.00526 * 180.02562 * 14 13 12 33 33 H 1.08002 * 126.73322 * 359.97438 * 18 17 15 34 34 H 1.09002 * 109.67527 * 103.04405 * 22 20 19 35 35 H 1.08996 * 109.67400 * 223.54175 * 22 20 19 36 36 H 1.09002 * 109.45551 * 170.19722 * 23 22 20 37 37 H 1.09000 * 109.45331 * 290.14231 * 23 22 20 38 38 H 1.09002 * 109.47810 * 49.74357 * 24 23 22 39 39 H 1.09001 * 109.48163 * 169.77226 * 24 23 22 40 40 H 1.08996 * 109.68333 * 283.30993 * 25 19 18 41 41 H 1.09002 * 109.68759 * 43.87090 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2488 -4.6214 0.8836 12 6 3.2630 -5.4436 0.5308 13 6 3.8671 -4.9130 -0.6205 14 7 4.9598 -5.4619 -1.3038 15 6 5.5262 -6.6027 -0.8630 16 8 5.0880 -7.1562 0.1284 17 6 6.6696 -7.1776 -1.5786 18 6 7.3345 -8.3244 -1.2408 19 6 8.3450 -8.4921 -2.1900 20 6 8.2613 -7.4553 -3.0594 21 8 7.2466 -6.6702 -2.6899 22 6 9.1878 -7.2699 -4.2372 23 6 10.4211 -8.1564 -4.0275 24 6 9.9761 -9.5808 -3.6852 25 6 9.3630 -9.5997 -2.2792 26 7 3.2287 -3.8132 -0.9445 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5907 -4.7507 1.7301 31 1 3.5585 -6.3459 1.0455 32 1 5.3093 -5.0206 -2.0937 33 1 7.1200 -8.9728 -0.4041 34 1 8.6776 -7.5621 -5.1551 35 1 9.4928 -6.2256 -4.3035 36 1 11.0168 -8.1715 -4.9403 37 1 11.0206 -7.7567 -3.2096 38 1 9.2334 -9.9137 -4.4103 39 1 10.8377 -10.2478 -3.7149 40 1 10.1440 -9.4412 -1.5356 41 1 8.8775 -10.5597 -2.1035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548525065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:48 Heat of formation + Delta-G solvation = 47.296298 kcal Electronic energy + Delta-G solvation = -24729.977231 eV Core-core repulsion = 20998.879568 eV Total energy + Delta-G solvation = -3731.097664 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.10868 -40.75881 -39.19827 -37.53907 -34.99959 -33.70739 -33.35275 -31.12054 -30.58840 -29.56668 -29.39711 -26.45737 -24.87752 -23.37870 -22.85483 -22.26480 -21.39316 -20.60238 -20.02920 -19.00377 -17.89614 -17.20713 -16.84823 -16.69005 -16.16608 -15.38579 -15.19478 -14.90528 -14.49630 -14.31082 -14.00632 -13.92022 -13.79505 -13.37984 -13.16050 -13.13188 -12.89787 -12.61117 -12.48624 -12.28163 -11.87377 -11.38223 -11.34476 -11.17709 -11.01808 -10.83176 -10.55286 -10.28573 -10.18032 -9.94720 -9.85330 -9.02993 -8.64930 -8.58584 -8.25078 -7.57128 -6.59235 -4.33283 0.79734 2.00182 2.26230 2.57670 2.70620 2.97961 3.36432 3.40636 3.57048 3.66515 3.72139 4.17409 4.29455 4.35872 4.40217 4.44372 4.66176 4.77332 4.97408 4.99692 5.05271 5.14518 5.29676 5.33306 5.40394 5.44366 5.49710 5.61402 5.65927 5.68793 5.74047 5.81682 6.08939 6.16704 6.34294 6.40155 6.54465 6.71057 6.74089 7.24072 7.41641 7.67147 7.79877 8.02906 8.33318 8.49369 8.60289 9.34879 10.78486 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.002414 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.294090 B =11596.643143 C =12542.001824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.079 2.921 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.608 4.608 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.315 5.315 11 C 0.053 3.947 12 C -0.284 4.284 13 C 0.257 3.743 14 N -0.620 5.620 15 C 0.611 3.389 16 O -0.498 6.498 17 C -0.077 4.077 18 C -0.104 4.104 19 C -0.193 4.193 20 C 0.021 3.979 21 O -0.156 6.156 22 C -0.042 4.042 23 C -0.116 4.116 24 C -0.123 4.123 25 C -0.050 4.050 26 N -0.297 5.297 27 H 0.267 0.733 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.170 0.830 31 H 0.162 0.838 32 H 0.416 0.584 33 H 0.162 0.838 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.700 -19.292 -7.126 28.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.646 4.646 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.097 5.097 11 C -0.097 4.097 12 C -0.315 4.315 13 C 0.004 3.996 14 N -0.266 5.266 15 C 0.397 3.603 16 O -0.373 6.373 17 C -0.129 4.129 18 C -0.124 4.124 19 C -0.194 4.194 20 C -0.032 4.032 21 O -0.051 6.051 22 C -0.079 4.079 23 C -0.154 4.154 24 C -0.161 4.161 25 C -0.087 4.087 26 N -0.128 5.128 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.187 0.813 31 H 0.180 0.820 32 H 0.252 0.748 33 H 0.180 0.820 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 18.905 -16.696 -7.386 26.281 hybrid contribution 0.264 -2.113 0.317 2.153 sum 19.169 -18.809 -7.069 27.770 Atomic orbital electron populations 1.70823 1.06772 1.30460 1.45985 1.25931 0.96320 1.02828 0.93123 0.83382 0.74698 0.74301 0.76974 1.21189 1.21231 1.20694 1.22129 0.95422 0.90395 1.56674 0.91785 1.19792 0.86292 0.82803 0.98080 1.48825 1.23247 1.19516 1.18114 1.22571 1.00395 0.90056 0.96700 1.21532 1.02209 1.06333 1.01441 1.19025 0.91412 0.94415 0.94739 1.42256 1.29749 1.24371 1.30235 1.16365 0.80592 0.79927 0.83384 1.90824 1.61320 1.60701 1.24491 1.21851 1.00787 0.98825 0.91396 1.21579 0.94540 0.96082 1.00247 1.20155 1.01485 0.99833 0.97909 1.22759 0.90376 0.91010 0.99054 1.83917 1.37724 1.46479 1.37000 1.20363 0.92832 1.02168 0.92523 1.21601 0.96079 0.94952 1.02764 1.21656 1.00947 0.96724 0.96748 1.20102 0.95543 0.95573 0.97469 1.77382 1.03417 1.16018 1.15981 0.92243 0.93515 0.94669 0.81295 0.82048 0.74804 0.82016 0.89001 0.89183 0.90230 0.91016 0.91380 0.90944 0.90539 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.65 55.43 0.76 -25.67 16 2 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 3 Si 1.08 25.12 29.90 -169.99 -5.08 20.04 16 4 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.61 -17.21 9.24 -34.44 -0.32 -17.53 16 8 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.25 6.32 5.57 -5.19 -0.03 6.29 16 10 N -0.32 -7.45 3.67 -62.56 -0.23 -7.68 16 11 C 0.05 1.06 11.43 -17.24 -0.20 0.86 16 12 C -0.28 -5.71 9.61 -39.83 -0.38 -6.09 16 13 C 0.26 5.35 8.11 -154.45 -1.25 4.10 16 14 N -0.62 -10.56 5.44 -12.33 -0.07 -10.63 16 15 C 0.61 9.85 7.75 -12.87 -0.10 9.75 16 16 O -0.50 -9.02 13.99 5.18 0.07 -8.95 16 17 C -0.08 -1.03 7.14 -36.72 -0.26 -1.29 16 18 C -0.10 -1.20 10.60 -39.58 -0.42 -1.62 16 19 C -0.19 -1.87 5.93 -105.05 -0.62 -2.49 16 20 C 0.02 0.21 7.22 -35.12 -0.25 -0.05 16 21 O -0.16 -1.91 10.39 5.53 0.06 -1.85 16 22 C -0.04 -0.26 6.30 -27.57 -0.17 -0.43 16 23 C -0.12 -0.54 5.89 -26.51 -0.16 -0.70 16 24 C -0.12 -0.60 5.91 -26.47 -0.16 -0.76 16 25 C -0.05 -0.33 6.28 -27.67 -0.17 -0.50 16 26 N -0.30 -7.04 12.42 31.43 0.39 -6.65 16 27 H 0.27 7.63 7.22 -40.82 -0.29 7.33 16 28 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 29 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 30 H 0.17 2.74 8.06 -52.48 -0.42 2.32 16 31 H 0.16 3.10 5.90 -52.48 -0.31 2.79 16 32 H 0.42 6.20 8.58 -40.82 -0.35 5.85 16 33 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 38 H 0.07 0.35 8.11 -51.93 -0.42 -0.08 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 349.87 15.07 5.27 5.27 Total: -1.00 -33.54 349.87 -8.64 -42.18 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.21 Total: 3.86 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -4.59 Total: -9.92 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.85 Total: -50.63 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.13 Total: -10.80 kcal Atomic # 14 Polarization: 25.12 SS G_CDS: -5.08 Total: 20.04 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.54 -8.64 -42.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548525065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.474 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds