Wall clock time and date at job start Tue Mar 31 2020 10:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.97410 * 124.71196 * 10 9 7 12 12 C 1.35237 * 107.86631 * 179.87309 * 11 10 9 13 13 C 1.40429 * 107.86452 * 0.38685 * 12 11 10 14 14 N 1.40072 * 125.97960 * 179.78256 * 13 12 11 15 15 C 1.34783 * 119.99547 * 359.97438 * 14 13 12 16 16 O 1.21708 * 120.00336 * 0.02562 * 15 14 13 17 17 C 1.46631 * 119.99605 * 179.97438 * 15 14 13 18 18 C 1.36792 * 125.95599 * 180.02562 * 17 15 14 19 19 C 1.39649 * 106.53156 * 179.97438 * 18 17 15 20 20 C 1.35572 * 107.41914 * 0.04835 * 19 18 17 21 21 O 1.33506 * 108.60979 * 359.68370 * 20 19 18 22 22 C 1.50999 * 123.79570 * 179.82205 * 20 19 18 23 23 C 1.53324 * 108.41615 * 343.31146 * 22 20 19 24 24 C 1.53106 * 109.55224 * 50.16954 * 23 22 20 25 25 C 1.50699 * 128.11888 * 180.12499 * 19 18 17 26 26 N 1.31237 * 108.04636 * 359.76378 * 13 12 11 27 27 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 29 29 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 30 30 H 1.08004 * 126.07280 * 0.02562 * 11 10 9 31 31 H 1.08003 * 126.07353 * 180.15179 * 12 11 10 32 32 H 0.96995 * 120.00526 * 180.02562 * 14 13 12 33 33 H 1.08002 * 126.73322 * 359.97438 * 18 17 15 34 34 H 1.09002 * 109.67527 * 103.04405 * 22 20 19 35 35 H 1.08996 * 109.67400 * 223.54175 * 22 20 19 36 36 H 1.09002 * 109.45551 * 170.19722 * 23 22 20 37 37 H 1.09000 * 109.45331 * 290.14231 * 23 22 20 38 38 H 1.09002 * 109.47810 * 49.74357 * 24 23 22 39 39 H 1.09001 * 109.48163 * 169.77226 * 24 23 22 40 40 H 1.08996 * 109.68333 * 283.30993 * 25 19 18 41 41 H 1.09002 * 109.68759 * 43.87090 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2488 -4.6214 0.8836 12 6 3.2630 -5.4436 0.5308 13 6 3.8671 -4.9130 -0.6205 14 7 4.9598 -5.4619 -1.3038 15 6 5.5262 -6.6027 -0.8630 16 8 5.0880 -7.1562 0.1284 17 6 6.6696 -7.1776 -1.5786 18 6 7.3345 -8.3244 -1.2408 19 6 8.3450 -8.4921 -2.1900 20 6 8.2613 -7.4553 -3.0594 21 8 7.2466 -6.6702 -2.6899 22 6 9.1878 -7.2699 -4.2372 23 6 10.4211 -8.1564 -4.0275 24 6 9.9761 -9.5808 -3.6852 25 6 9.3630 -9.5997 -2.2792 26 7 3.2287 -3.8132 -0.9445 27 1 -0.4850 -0.8400 0.0004 28 1 0.6281 -2.5591 0.8866 29 1 0.6207 -2.5548 -0.8933 30 1 1.5907 -4.7507 1.7301 31 1 3.5585 -6.3459 1.0455 32 1 5.3093 -5.0206 -2.0937 33 1 7.1200 -8.9728 -0.4041 34 1 8.6776 -7.5621 -5.1551 35 1 9.4928 -6.2256 -4.3035 36 1 11.0168 -8.1715 -4.9403 37 1 11.0206 -7.7567 -3.2096 38 1 9.2334 -9.9137 -4.4103 39 1 10.8377 -10.2478 -3.7149 40 1 10.1440 -9.4412 -1.5356 41 1 8.8775 -10.5597 -2.1035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548525065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:47 Heat of formation + Delta-G solvation = 27.446835 kcal Electronic energy + Delta-G solvation = -24730.837969 eV Core-core repulsion = 20998.879568 eV Total energy + Delta-G solvation = -3731.958401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.98369 -42.36153 -40.58631 -38.08823 -36.57792 -35.63154 -34.15066 -32.87543 -31.20555 -31.08224 -30.44393 -28.26583 -26.00905 -24.87053 -23.91002 -23.07120 -22.64462 -21.98622 -21.35935 -19.96078 -19.27858 -18.95151 -18.22556 -17.74746 -17.06840 -17.00912 -16.44319 -15.98813 -15.76213 -15.54759 -15.45810 -15.05654 -14.74956 -14.51204 -14.25545 -14.07706 -13.99476 -13.80489 -13.76046 -13.53410 -13.25246 -13.08980 -12.62952 -12.17591 -11.99435 -11.82719 -11.77321 -11.74665 -11.46285 -11.38582 -11.04959 -10.78124 -10.70704 -9.94481 -9.52609 -9.24048 -8.80381 -6.58034 -0.23274 0.91116 1.07256 1.22186 1.49092 1.52035 1.56906 1.63588 1.77168 2.18987 2.20317 2.46823 2.99105 3.30364 3.65445 3.72090 3.80210 3.99883 4.06352 4.08826 4.15324 4.34421 4.45828 4.50251 4.58760 4.61366 4.66491 4.73154 4.75464 4.84789 4.90792 4.93975 5.02812 5.09751 5.19198 5.22631 5.45297 5.49865 5.51654 5.69013 5.76020 5.87767 6.08107 6.23129 6.38761 6.69685 6.86114 7.17224 8.56431 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.002414 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.294090 B =11596.643143 C =12542.001824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.019 4.019 3 Si 1.122 2.878 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.622 4.622 8 H 0.043 0.957 9 C 0.258 3.742 10 N -0.340 5.340 11 C 0.061 3.939 12 C -0.289 4.289 13 C 0.264 3.736 14 N -0.619 5.619 15 C 0.615 3.385 16 O -0.523 6.523 17 C -0.110 4.110 18 C -0.094 4.094 19 C -0.200 4.200 20 C 0.026 3.974 21 O -0.168 6.168 22 C -0.045 4.045 23 C -0.114 4.114 24 C -0.122 4.122 25 C -0.051 4.051 26 N -0.343 5.343 27 H 0.261 0.739 28 H 0.058 0.942 29 H 0.018 0.982 30 H 0.208 0.792 31 H 0.173 0.827 32 H 0.424 0.576 33 H 0.170 0.830 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.031 -20.406 -7.640 30.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.218 4.218 3 Si 0.943 3.057 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.660 4.660 8 H 0.062 0.938 9 C 0.139 3.861 10 N -0.122 5.122 11 C -0.088 4.088 12 C -0.320 4.320 13 C 0.010 3.990 14 N -0.266 5.266 15 C 0.404 3.596 16 O -0.400 6.400 17 C -0.161 4.161 18 C -0.115 4.115 19 C -0.202 4.202 20 C -0.027 4.027 21 O -0.064 6.064 22 C -0.082 4.082 23 C -0.151 4.151 24 C -0.159 4.159 25 C -0.088 4.088 26 N -0.173 5.173 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.036 0.964 30 H 0.224 0.776 31 H 0.190 0.810 32 H 0.261 0.739 33 H 0.187 0.813 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 21.250 -17.848 -7.905 28.855 hybrid contribution -0.326 -1.949 0.414 2.019 sum 20.924 -19.797 -7.491 29.763 Atomic orbital electron populations 1.70916 1.07383 1.30235 1.47278 1.27276 0.96464 1.06052 0.92052 0.82846 0.73793 0.70995 0.78074 1.19260 1.20702 1.19935 1.22295 0.94617 0.92155 1.56956 0.93824 1.19476 0.86359 0.82661 0.97602 1.48627 1.23827 1.20222 1.19533 1.23231 1.00423 0.88482 0.96619 1.21753 1.02224 1.06688 1.01362 1.19354 0.91457 0.93452 0.94722 1.42365 1.29005 1.24807 1.30439 1.16675 0.80757 0.79080 0.83099 1.90781 1.62357 1.61219 1.25632 1.21359 1.01556 1.00153 0.93075 1.21877 0.94199 0.95048 1.00357 1.20560 1.01657 1.00838 0.97103 1.23675 0.89279 0.90186 0.99520 1.83901 1.38572 1.47208 1.36713 1.20667 0.92807 1.03319 0.91418 1.21644 0.95294 0.94284 1.03883 1.21680 1.01551 0.97307 0.95381 1.20244 0.94951 0.94550 0.99043 1.77296 1.04734 1.17918 1.17402 0.92890 0.92438 0.96399 0.77560 0.80982 0.73894 0.81259 0.87539 0.88327 0.87926 0.91197 0.91465 0.89016 0.89724 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.16 13.65 21.45 0.29 -53.86 16 2 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 3 Si 1.12 50.34 29.90 68.60 2.05 52.39 16 4 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.62 -35.89 9.24 25.60 0.24 -35.65 16 8 H 0.04 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.26 13.43 5.57 85.64 0.48 13.91 16 10 N -0.34 -16.35 3.67 -351.84 -1.29 -17.64 16 11 C 0.06 2.42 11.43 83.52 0.95 3.38 16 12 C -0.29 -11.61 9.61 22.11 0.21 -11.40 16 13 C 0.26 11.20 8.11 133.35 1.08 12.28 16 14 N -0.62 -21.54 5.44 -311.13 -1.69 -23.23 16 15 C 0.61 20.10 7.75 86.43 0.67 20.77 16 16 O -0.52 -19.08 13.99 -4.37 -0.06 -19.15 16 17 C -0.11 -2.96 7.14 24.12 0.17 -2.78 16 18 C -0.09 -2.11 10.60 22.27 0.24 -1.88 16 19 C -0.20 -3.55 5.93 -20.14 -0.12 -3.67 16 20 C 0.03 0.48 7.22 25.16 0.18 0.66 16 21 O -0.17 -4.04 10.39 -3.13 -0.03 -4.07 16 22 C -0.05 -0.45 6.30 30.05 0.19 -0.26 16 23 C -0.11 -0.68 5.89 30.74 0.18 -0.50 16 24 C -0.12 -0.79 5.91 30.77 0.18 -0.61 16 25 C -0.05 -0.54 6.28 29.98 0.19 -0.35 16 26 N -0.34 -16.69 12.42 -54.48 -0.68 -17.36 16 27 H 0.26 15.17 7.22 -92.71 -0.67 14.50 16 28 H 0.06 2.84 7.94 -2.39 -0.02 2.82 16 29 H 0.02 0.99 8.00 -2.39 -0.02 0.97 16 30 H 0.21 6.34 8.06 -2.91 -0.02 6.31 16 31 H 0.17 6.54 5.90 -2.91 -0.02 6.52 16 32 H 0.42 13.04 8.58 -92.71 -0.80 12.25 16 33 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.07 0.47 8.11 -2.39 -0.02 0.45 16 38 H 0.07 0.47 8.11 -2.39 -0.02 0.45 16 39 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -73.29 349.87 4.27 -69.02 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.38 Total: 20.60 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 5.31 Total: -6.69 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -3.37 Total: -112.10 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.09 Total: -23.22 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 2.05 Total: 52.39 kcal Total: -73.29 4.27 -69.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548525065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.467 kcal (2) G-P(sol) polarization free energy of solvation -73.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds