Wall clock time and date at job start Tue Mar 31 2020 11:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38213 * 119.99666 * 179.74118 * 3 2 1 5 5 C 1.38251 * 120.00231 * 0.53892 * 4 3 2 6 6 C 1.38220 * 120.00091 * 359.73561 * 5 4 3 7 7 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 8 8 C 1.50699 * 119.99714 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.47778 * 325.00018 * 8 7 2 10 10 N 1.46501 * 109.47125 * 205.00095 * 8 7 2 11 11 C 1.39990 * 120.00184 * 155.00293 * 10 8 7 12 12 C 1.40431 * 125.97545 * 359.97438 * 11 10 8 13 13 C 1.35244 * 107.86011 * 179.97438 * 12 11 10 14 14 N 1.34962 * 107.86817 * 0.02562 * 13 12 11 15 15 C 1.46498 * 125.97332 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46901 * 125.00193 * 15 14 13 17 17 H 1.08007 * 120.00221 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00059 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99701 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00249 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47050 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47244 * 120.00049 * 20 18 16 23 23 H 1.48501 * 109.47757 * 240.00212 * 20 18 16 24 24 N 1.31222 * 125.97585 * 179.69132 * 11 10 8 25 25 C 1.50704 * 109.47202 * 85.00469 * 8 7 2 26 26 O 1.20823 * 120.00287 * 119.99855 * 25 8 7 27 27 O 1.34229 * 119.99698 * 299.99620 * 25 8 7 28 28 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 31 31 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.99630 * 180.29748 * 4 3 2 33 33 H 1.08003 * 119.99982 * 179.76676 * 5 4 3 34 34 H 1.07998 * 120.00200 * 180.02562 * 6 5 4 35 35 H 0.97003 * 119.99697 * 335.00240 * 10 8 7 36 36 H 1.07995 * 126.06365 * 0.02562 * 12 11 10 37 37 H 1.08003 * 126.06521 * 180.02562 * 13 12 11 38 38 H 1.09004 * 109.46918 * 244.99455 * 15 14 13 39 39 H 1.08993 * 109.47011 * 4.99964 * 15 14 13 40 40 H 0.96992 * 120.00019 * 179.97438 * 19 18 16 41 41 H 0.96698 * 116.99921 * 180.02562 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0054 5 6 4.2717 0.0000 -0.0004 6 6 3.5806 -1.1970 -0.0062 7 6 2.1981 -1.1969 -0.0058 8 6 1.4446 -2.5020 -0.0116 9 1 0.5340 -2.3985 0.5787 10 7 2.2847 -3.5535 0.5670 11 6 1.6932 -4.6803 1.1504 12 6 0.3149 -4.9302 1.2499 13 6 0.1529 -6.1182 1.8755 14 7 1.3783 -6.6051 2.1635 15 6 1.6633 -7.8722 2.8413 16 6 2.5856 -8.7027 1.9864 17 1 2.9251 -8.3247 1.0334 18 6 2.9961 -9.9452 2.4210 19 7 2.5823 -10.4057 3.5814 20 14 4.1386 -10.9750 1.3612 21 1 4.4551 -10.2363 0.1123 22 1 5.3940 -11.2471 2.1064 23 1 3.4758 -12.2599 1.0224 24 7 2.3299 -5.6900 1.6954 25 6 1.0857 -2.8686 -1.4286 26 8 1.4901 -3.9021 -1.9062 27 8 0.3166 -2.0469 -2.1601 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3633 -0.8875 -0.5181 30 1 -0.3633 0.8925 -0.5096 31 1 1.6583 2.1326 0.0004 32 1 4.1204 2.1326 0.0103 33 1 5.3517 0.0000 0.0000 34 1 4.1206 -2.1323 -0.0103 35 1 3.2508 -3.4690 0.5458 36 1 -0.4753 -4.2881 0.8899 37 1 -0.7898 -6.5931 2.1042 38 1 2.1398 -7.6717 3.8009 39 1 0.7321 -8.4146 3.0041 40 1 2.8707 -11.2799 3.8870 41 1 0.1128 -2.3249 -3.0636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600574269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:46 Heat of formation + Delta-G solvation = 25.321847 kcal Electronic energy + Delta-G solvation = -25545.995429 eV Core-core repulsion = 21813.944882 eV Total energy + Delta-G solvation = -3732.050547 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.89971 -40.06315 -39.34303 -36.39366 -35.53300 -33.55352 -33.10306 -31.83023 -30.23299 -29.33483 -27.62948 -26.82224 -26.31662 -23.04004 -22.78060 -21.87860 -21.13069 -19.98556 -19.44373 -18.12180 -17.23581 -16.84834 -16.53769 -16.38961 -15.79331 -15.46075 -15.15235 -14.84772 -14.41118 -14.16218 -13.93334 -13.76855 -13.36056 -13.26916 -13.13451 -12.59683 -12.41153 -12.28355 -12.21490 -12.05201 -11.72104 -11.58963 -11.27289 -11.17619 -10.98555 -10.81076 -10.72536 -10.19866 -10.06100 -9.66769 -9.32170 -9.06410 -8.83060 -8.58048 -7.95962 -7.15290 -6.19026 -4.23295 1.00070 1.15222 2.22325 2.67400 2.93251 3.20838 3.26418 3.33748 3.42362 3.57905 3.77216 4.13019 4.28744 4.38848 4.56880 4.68441 4.79078 5.00148 5.08283 5.16012 5.18461 5.33723 5.44556 5.47173 5.49199 5.64603 5.73986 5.90150 6.00732 6.13811 6.22053 6.27028 6.32710 6.44770 6.47543 6.72114 6.74953 7.00478 7.15685 7.48859 7.76409 7.89506 7.92465 8.07031 8.13456 8.78872 8.90752 9.42240 10.89570 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.003010 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.443686 B = 9300.663583 C = 9577.348324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.055 4.055 3 C -0.122 4.122 4 C -0.110 4.110 5 C -0.124 4.124 6 C -0.099 4.099 7 C -0.096 4.096 8 C 0.232 3.768 9 H 0.125 0.875 10 N -0.701 5.701 11 C 0.307 3.693 12 C -0.333 4.333 13 C 0.070 3.930 14 N -0.324 5.324 15 C 0.259 3.741 16 C -0.524 4.524 17 H 0.070 0.930 18 C 0.061 3.939 19 N -0.897 5.897 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.282 1.282 24 N -0.322 5.322 25 C 0.455 3.545 26 O -0.487 6.487 27 O -0.517 6.517 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.405 0.595 36 H 0.127 0.873 37 H 0.165 0.835 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.266 0.734 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.043 24.192 -7.570 25.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.055 4.055 3 C -0.140 4.140 4 C -0.128 4.128 5 C -0.142 4.142 6 C -0.118 4.118 7 C -0.097 4.097 8 C 0.122 3.878 9 H 0.142 0.858 10 N -0.345 5.345 11 C 0.052 3.948 12 C -0.366 4.366 13 C -0.082 4.082 14 N -0.103 5.103 15 C 0.142 3.858 16 C -0.563 4.563 17 H 0.088 0.912 18 C -0.141 4.141 19 N -0.536 5.536 20 Si 0.734 3.266 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.208 1.208 24 N -0.153 5.153 25 C 0.292 3.708 26 O -0.372 6.372 27 O -0.329 6.329 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.243 0.757 36 H 0.145 0.855 37 H 0.182 0.818 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -3.809 23.207 -6.819 24.486 hybrid contribution 0.050 -0.606 -1.389 1.516 sum -3.759 22.601 -8.208 24.337 Atomic orbital electron populations 1.21007 0.90684 1.04127 1.02593 1.19680 0.96389 0.91865 0.97598 1.21016 0.94222 0.97330 1.01436 1.21197 0.94377 0.98088 0.99147 1.21103 1.00110 0.92145 1.00809 1.20967 0.93382 0.98690 0.98742 1.19335 0.93775 0.92471 1.04094 1.18805 0.96102 0.85324 0.87604 0.85786 1.43055 1.07286 1.18771 1.65347 1.19025 0.90887 0.88543 0.96384 1.20668 0.94283 1.02091 1.19568 1.22310 0.91287 0.95030 0.99535 1.49027 1.01830 1.17076 1.42409 1.19691 0.98485 0.74997 0.92662 1.21330 1.28752 1.00876 1.05333 0.91199 1.24941 0.96415 0.97457 0.95333 1.69928 1.44883 1.19337 1.19437 0.86290 0.80242 0.79655 0.80451 1.19517 1.20720 1.20811 1.77434 1.14403 1.00478 1.23024 1.24552 0.75163 0.81492 0.89576 1.90778 1.50149 1.24760 1.71522 1.84558 1.65513 1.52161 1.30624 0.90817 0.89801 0.91201 0.85708 0.85912 0.85698 0.85689 0.75685 0.85537 0.81814 0.93818 0.92765 0.92471 0.73741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.95 9.09 36.01 0.33 -0.63 16 2 C -0.05 -0.51 5.82 -104.62 -0.61 -1.12 16 3 C -0.12 -1.01 9.70 -39.58 -0.38 -1.39 16 4 C -0.11 -0.90 10.05 -39.59 -0.40 -1.30 16 5 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 6 C -0.10 -1.09 9.24 -39.58 -0.37 -1.45 16 7 C -0.10 -1.07 4.98 -104.63 -0.52 -1.59 16 8 C 0.23 2.97 2.03 -70.23 -0.14 2.83 16 9 H 0.12 1.45 5.99 -51.93 -0.31 1.13 16 10 N -0.70 -11.37 4.72 -55.83 -0.26 -11.64 16 11 C 0.31 6.19 8.06 -154.55 -1.25 4.95 16 12 C -0.33 -6.16 9.92 -39.82 -0.40 -6.56 16 13 C 0.07 1.38 11.43 -17.24 -0.20 1.19 16 14 N -0.32 -7.69 3.67 -62.56 -0.23 -7.92 16 15 C 0.26 6.74 6.26 -5.20 -0.03 6.71 16 16 C -0.52 -15.07 9.23 -34.44 -0.32 -15.38 16 17 H 0.07 2.11 7.81 -52.48 -0.41 1.70 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.90 -25.87 13.29 55.43 0.74 -25.14 16 20 Si 0.91 22.03 29.54 -169.99 -5.02 17.01 16 21 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 N -0.32 -7.73 12.42 31.41 0.39 -7.34 16 25 C 0.45 6.12 7.60 36.01 0.27 6.40 16 26 O -0.49 -8.77 17.12 -18.75 -0.32 -9.09 16 27 O -0.52 -4.84 11.05 -39.26 -0.43 -5.28 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.67 4.55 -51.93 -0.24 0.43 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 33 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.13 1.37 6.07 -52.49 -0.32 1.05 16 35 H 0.40 6.30 6.33 -40.82 -0.26 6.04 16 36 H 0.13 1.93 7.45 -52.49 -0.39 1.54 16 37 H 0.16 2.59 8.06 -52.48 -0.42 2.17 16 38 H 0.04 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.37 8.07 -51.93 -0.42 0.96 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.40 2.32 9.10 45.56 0.41 2.74 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -35.27 352.34 -8.36 -43.63 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.02 Total: 7.73 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -4.50 Total: -7.27 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.63 Total: -52.03 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.75 Total: -14.37 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.27 -8.36 -43.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600574269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.950 kcal (2) G-P(sol) polarization free energy of solvation -35.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds