Wall clock time and date at job start Tue Mar 31 2020 11:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38259 * 120.00036 * 2 1 4 4 C 1.38213 * 119.99666 * 179.74118 * 3 2 1 5 5 C 1.38251 * 120.00231 * 0.53892 * 4 3 2 6 6 C 1.38220 * 120.00091 * 359.73561 * 5 4 3 7 7 C 1.38214 * 120.00023 * 180.27821 * 2 1 3 8 8 C 1.50699 * 119.99714 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.47778 * 325.00018 * 8 7 2 10 10 N 1.46501 * 109.47125 * 205.00095 * 8 7 2 11 11 C 1.39990 * 120.00184 * 155.00293 * 10 8 7 12 12 C 1.40431 * 125.97545 * 359.97438 * 11 10 8 13 13 C 1.35244 * 107.86011 * 179.97438 * 12 11 10 14 14 N 1.34962 * 107.86817 * 0.02562 * 13 12 11 15 15 C 1.46498 * 125.97332 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46901 * 125.00193 * 15 14 13 17 17 H 1.08007 * 120.00221 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00059 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99701 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00249 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47050 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47244 * 120.00049 * 20 18 16 23 23 H 1.48501 * 109.47757 * 240.00212 * 20 18 16 24 24 N 1.31222 * 125.97585 * 179.69132 * 11 10 8 25 25 C 1.50704 * 109.47202 * 85.00469 * 8 7 2 26 26 O 1.20823 * 120.00287 * 119.99855 * 25 8 7 27 27 O 1.34229 * 119.99698 * 299.99620 * 25 8 7 28 28 H 1.09002 * 109.47152 * 269.72306 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.72407 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.72387 * 1 2 3 31 31 H 1.08000 * 119.99861 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.99630 * 180.29748 * 4 3 2 33 33 H 1.08003 * 119.99982 * 179.76676 * 5 4 3 34 34 H 1.07998 * 120.00200 * 180.02562 * 6 5 4 35 35 H 0.97003 * 119.99697 * 335.00240 * 10 8 7 36 36 H 1.07995 * 126.06365 * 0.02562 * 12 11 10 37 37 H 1.08003 * 126.06521 * 180.02562 * 13 12 11 38 38 H 1.09004 * 109.46918 * 244.99455 * 15 14 13 39 39 H 1.08993 * 109.47011 * 4.99964 * 15 14 13 40 40 H 0.96992 * 120.00019 * 179.97438 * 19 18 16 41 41 H 0.96698 * 116.99921 * 180.02562 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0054 5 6 4.2717 0.0000 -0.0004 6 6 3.5806 -1.1970 -0.0062 7 6 2.1981 -1.1969 -0.0058 8 6 1.4446 -2.5020 -0.0116 9 1 0.5340 -2.3985 0.5787 10 7 2.2847 -3.5535 0.5670 11 6 1.6932 -4.6803 1.1504 12 6 0.3149 -4.9302 1.2499 13 6 0.1529 -6.1182 1.8755 14 7 1.3783 -6.6051 2.1635 15 6 1.6633 -7.8722 2.8413 16 6 2.5856 -8.7027 1.9864 17 1 2.9251 -8.3247 1.0334 18 6 2.9961 -9.9452 2.4210 19 7 2.5823 -10.4057 3.5814 20 14 4.1386 -10.9750 1.3612 21 1 4.4551 -10.2363 0.1123 22 1 5.3940 -11.2471 2.1064 23 1 3.4758 -12.2599 1.0224 24 7 2.3299 -5.6900 1.6954 25 6 1.0857 -2.8686 -1.4286 26 8 1.4901 -3.9021 -1.9062 27 8 0.3166 -2.0469 -2.1601 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3633 -0.8875 -0.5181 30 1 -0.3633 0.8925 -0.5096 31 1 1.6583 2.1326 0.0004 32 1 4.1204 2.1326 0.0103 33 1 5.3517 0.0000 0.0000 34 1 4.1206 -2.1323 -0.0103 35 1 3.2508 -3.4690 0.5458 36 1 -0.4753 -4.2881 0.8899 37 1 -0.7898 -6.5931 2.1042 38 1 2.1398 -7.6717 3.8009 39 1 0.7321 -8.4146 3.0041 40 1 2.8707 -11.2799 3.8870 41 1 0.1128 -2.3249 -3.0636 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600574269.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:45 Heat of formation + Delta-G solvation = 2.710643 kcal Electronic energy + Delta-G solvation = -25546.975924 eV Core-core repulsion = 21813.944882 eV Total energy + Delta-G solvation = -3733.031043 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07996 -41.45401 -40.17104 -37.44184 -36.71505 -35.46779 -33.95778 -33.20392 -31.62569 -30.81906 -28.80589 -28.04293 -27.52602 -24.92204 -23.62218 -22.84045 -22.28737 -21.30973 -20.82892 -19.11846 -18.67639 -18.35161 -17.88959 -17.69555 -16.89090 -16.62334 -16.27024 -16.10496 -15.78121 -15.63007 -15.08944 -14.62810 -14.56726 -14.40917 -14.11234 -14.00687 -13.78665 -13.63844 -13.47820 -12.98224 -12.93257 -12.77665 -12.72486 -12.55772 -12.31453 -12.15538 -11.99046 -11.83795 -11.69148 -11.27581 -11.10263 -10.71688 -9.80096 -9.58453 -9.51490 -8.73326 -8.31825 -6.47401 0.26585 0.45783 1.16430 1.26574 1.33787 1.35921 1.49261 1.52676 1.97976 2.30990 2.35155 2.64020 2.89654 2.96889 3.41154 3.77930 3.99457 4.02438 4.09852 4.22701 4.29778 4.36330 4.50305 4.62548 4.77731 4.83735 4.90047 4.92433 4.94743 4.99215 5.03442 5.08817 5.39838 5.43172 5.52903 5.56842 5.58621 5.60244 5.67293 5.83243 6.07006 6.15498 6.35684 6.57532 6.68606 6.98725 7.22541 7.26029 8.73567 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.003010 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.443686 B = 9300.663583 C = 9577.348324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 C -0.123 4.123 4 C -0.108 4.108 5 C -0.133 4.133 6 C -0.121 4.121 7 C -0.113 4.113 8 C 0.232 3.768 9 H 0.140 0.860 10 N -0.699 5.699 11 C 0.311 3.689 12 C -0.327 4.327 13 C 0.069 3.931 14 N -0.354 5.354 15 C 0.275 3.725 16 C -0.546 4.546 17 H 0.045 0.955 18 C 0.019 3.981 19 N -0.920 5.920 20 Si 0.969 3.031 21 H -0.280 1.280 22 H -0.271 1.271 23 H -0.266 1.266 24 N -0.383 5.383 25 C 0.466 3.534 26 O -0.541 6.541 27 O -0.497 6.497 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.153 0.847 32 H 0.150 0.850 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.404 0.596 36 H 0.164 0.836 37 H 0.201 0.799 38 H 0.018 0.982 39 H 0.058 0.942 40 H 0.273 0.727 41 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.240 26.493 -8.504 28.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.126 4.126 5 C -0.151 4.151 6 C -0.140 4.140 7 C -0.113 4.113 8 C 0.123 3.877 9 H 0.157 0.843 10 N -0.342 5.342 11 C 0.054 3.946 12 C -0.359 4.359 13 C -0.081 4.081 14 N -0.134 5.134 15 C 0.156 3.844 16 C -0.584 4.584 17 H 0.063 0.937 18 C -0.181 4.181 19 N -0.559 5.559 20 Si 0.793 3.207 21 H -0.205 1.205 22 H -0.196 1.196 23 H -0.191 1.191 24 N -0.215 5.215 25 C 0.306 3.694 26 O -0.430 6.430 27 O -0.309 6.309 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.156 0.844 34 H 0.130 0.870 35 H 0.242 0.758 36 H 0.181 0.819 37 H 0.217 0.783 38 H 0.036 0.964 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -5.049 25.570 -7.776 27.199 hybrid contribution 0.379 -1.088 -1.166 1.639 sum -4.671 24.482 -8.942 26.479 Atomic orbital electron populations 1.21061 0.89234 1.04768 1.03346 1.19941 0.97515 0.91469 0.96919 1.21393 0.94437 0.97995 1.00214 1.21569 0.94754 0.98635 0.97606 1.21336 1.00996 0.92043 1.00713 1.21033 0.93753 0.99032 1.00161 1.19276 0.93751 0.92170 1.06145 1.19018 0.96424 0.85022 0.87286 0.84317 1.43288 1.07815 1.18275 1.64835 1.19431 0.91839 0.88435 0.94875 1.21083 0.94351 1.02001 1.18457 1.23040 0.91282 0.95282 0.98462 1.48731 1.03178 1.16998 1.44478 1.19228 0.97737 0.76054 0.91380 1.21429 1.30079 1.01956 1.04948 0.93663 1.25704 0.97591 0.98295 0.96517 1.69990 1.45522 1.19941 1.20400 0.85343 0.78669 0.78290 0.78350 1.20533 1.19628 1.19119 1.77316 1.16136 1.02213 1.25801 1.24543 0.74389 0.80656 0.89850 1.90773 1.52430 1.27076 1.72718 1.84506 1.63973 1.50683 1.31787 0.89944 0.90402 0.89314 0.82921 0.83242 0.84399 0.87017 0.75820 0.81858 0.78252 0.96412 0.92401 0.91813 0.71525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 9.09 71.24 0.65 -0.84 16 2 C -0.06 -0.94 5.82 -19.86 -0.12 -1.06 16 3 C -0.12 -1.63 9.70 22.27 0.22 -1.41 16 4 C -0.11 -1.47 10.05 22.27 0.22 -1.25 16 5 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 6 C -0.12 -2.65 9.24 22.27 0.21 -2.45 16 7 C -0.11 -2.39 4.98 -19.87 -0.10 -2.49 16 8 C 0.23 5.73 2.03 43.50 0.09 5.82 16 9 H 0.14 2.97 5.99 -2.39 -0.01 2.95 16 10 N -0.70 -23.11 4.72 -330.55 -1.56 -24.67 16 11 C 0.31 12.74 8.06 133.39 1.07 13.81 16 12 C -0.33 -11.73 9.92 22.11 0.22 -11.51 16 13 C 0.07 2.68 11.43 83.52 0.96 3.63 16 14 N -0.35 -17.31 3.67 -351.85 -1.29 -18.60 16 15 C 0.28 14.90 6.26 85.63 0.54 15.44 16 16 C -0.55 -32.52 9.23 25.60 0.24 -32.29 16 17 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 18 C 0.02 1.10 5.46 84.66 0.46 1.56 16 19 N -0.92 -53.61 13.29 21.45 0.28 -53.32 16 20 Si 0.97 45.78 29.54 68.60 2.03 47.80 16 21 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 N -0.38 -19.15 12.42 -54.54 -0.68 -19.82 16 25 C 0.47 12.10 7.60 71.24 0.54 12.64 16 26 O -0.54 -19.59 17.12 21.97 0.38 -19.21 16 27 O -0.50 -8.20 11.05 -51.41 -0.57 -8.77 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 1.00 4.55 -2.39 -0.01 0.99 16 30 H 0.09 0.70 8.08 -2.38 -0.02 0.68 16 31 H 0.15 1.15 8.06 -2.91 -0.02 1.12 16 32 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 33 H 0.14 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.11 2.63 6.07 -2.91 -0.02 2.61 16 35 H 0.40 13.28 6.33 -92.71 -0.59 12.69 16 36 H 0.16 4.51 7.45 -2.91 -0.02 4.48 16 37 H 0.20 5.96 8.06 -2.91 -0.02 5.94 16 38 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.06 3.02 8.07 -2.39 -0.02 3.01 16 40 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 41 H 0.42 3.87 9.10 -74.06 -0.67 3.19 16 Total: -1.00 -79.08 352.34 3.84 -75.24 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.17 Total: 23.83 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.42 Total: -2.47 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -3.24 Total: -116.42 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.19 Total: -27.98 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -79.08 3.84 -75.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600574269.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.949 kcal (2) G-P(sol) polarization free energy of solvation -79.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds