Wall clock time and date at job start Tue Mar 31 2020 11:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38254 * 119.99771 * 2 1 4 4 C 1.38223 * 119.99536 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00173 * 0.02562 * 4 3 2 6 6 C 1.38211 * 119.99912 * 359.69965 * 5 4 3 7 7 C 1.38213 * 120.00067 * 179.97438 * 2 1 3 8 8 C 1.50703 * 119.99693 * 0.02562 * 7 2 1 9 9 H 1.08998 * 109.47576 * 32.97375 * 8 7 2 10 10 N 1.46503 * 109.46783 * 152.97191 * 8 7 2 11 11 C 1.39983 * 119.99740 * 207.53129 * 10 8 7 12 12 C 1.40433 * 125.98006 * 0.03043 * 11 10 8 13 13 C 1.35240 * 107.86553 * 179.73362 * 12 11 10 14 14 N 1.34963 * 107.86142 * 0.42527 * 13 12 11 15 15 C 1.46509 * 125.97332 * 179.83637 * 14 13 12 16 16 C 1.50704 * 109.46823 * 124.71249 * 15 14 13 17 17 H 1.07998 * 119.99907 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99682 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99720 * 179.72380 * 18 16 15 20 20 Si 1.86806 * 119.99943 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.46728 * 269.71765 * 20 18 16 22 22 H 1.48497 * 109.47249 * 29.71778 * 20 18 16 23 23 H 1.48497 * 109.46950 * 149.71863 * 20 18 16 24 24 N 1.31228 * 125.97646 * 180.02562 * 11 10 8 25 25 C 1.50702 * 109.46886 * 272.97261 * 8 7 2 26 26 O 1.20834 * 119.99697 * 240.00469 * 25 8 7 27 27 O 1.34223 * 120.00421 * 60.00077 * 25 8 7 28 28 H 1.09008 * 109.47173 * 270.02434 * 1 2 3 29 29 H 1.08996 * 109.47482 * 30.02128 * 1 2 3 30 30 H 1.08999 * 109.47421 * 150.02673 * 1 2 3 31 31 H 1.07995 * 120.00367 * 0.02562 * 3 2 1 32 32 H 1.07999 * 119.99261 * 179.97438 * 4 3 2 33 33 H 1.07994 * 119.99600 * 179.97438 * 5 4 3 34 34 H 1.08000 * 119.99854 * 180.29809 * 6 5 4 35 35 H 0.97003 * 119.99829 * 27.54113 * 10 8 7 36 36 H 1.08000 * 126.06433 * 359.97438 * 12 11 10 37 37 H 1.07998 * 126.07331 * 180.26365 * 13 12 11 38 38 H 1.08999 * 109.46902 * 4.71715 * 15 14 13 39 39 H 1.08991 * 109.46988 * 244.71531 * 15 14 13 40 40 H 0.97006 * 119.99635 * 180.28006 * 19 18 16 41 41 H 0.96697 * 117.00231 * 180.02562 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0063 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5020 0.0005 9 1 0.5164 -2.3858 -0.5591 10 7 2.2661 -3.5403 -0.6266 11 6 1.6550 -4.6272 -1.2628 12 6 0.2725 -4.8469 -1.3748 13 6 0.0896 -5.9976 -2.0614 14 7 1.3063 -6.4958 -2.3660 15 6 1.5693 -7.7340 -3.1036 16 6 2.4483 -7.4347 -4.2906 17 1 2.7784 -6.4233 -4.4766 18 6 2.8318 -8.4521 -5.1384 19 7 3.5944 -8.1900 -6.1772 20 14 2.2614 -10.2015 -4.8161 21 1 3.2504 -10.8930 -3.9508 22 1 0.9418 -10.1744 -4.1356 23 1 2.1386 -10.9276 -6.1056 24 7 2.2738 -5.6190 -1.8590 25 6 1.1290 -2.8999 1.4194 26 8 1.5475 -3.9436 1.8615 27 8 0.3831 -2.0948 2.1922 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5141 30 1 -0.3634 -0.8902 -0.5134 31 1 1.6582 2.1326 0.0004 32 1 4.1203 2.1326 0.0001 33 1 5.3516 0.0000 0.0005 34 1 4.1206 -2.1322 0.0111 35 1 3.2336 -3.4746 -0.6008 36 1 -0.5064 -4.2081 -0.9853 37 1 -0.8613 -6.4407 -2.3180 38 1 0.6264 -8.1591 -3.4478 39 1 2.0719 -8.4466 -2.4498 40 1 3.8609 -8.9052 -6.7760 41 1 0.2076 -2.3923 3.0954 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600574270.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:48 Heat of formation + Delta-G solvation = 31.313808 kcal Electronic energy + Delta-G solvation = -25538.436477 eV Core-core repulsion = 21806.645761 eV Total energy + Delta-G solvation = -3731.790716 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.91007 -40.14597 -39.36048 -36.42224 -35.56624 -33.54508 -33.08189 -31.91148 -30.50080 -29.41385 -27.75802 -26.87119 -26.60573 -22.81533 -22.75007 -21.84624 -21.12187 -19.99507 -19.50602 -18.15299 -17.26161 -16.93551 -16.88166 -16.44883 -15.82871 -15.51093 -15.20786 -14.84085 -14.49775 -14.15689 -13.91603 -13.62989 -13.39325 -13.28821 -13.22083 -12.79201 -12.50359 -12.47392 -12.24200 -12.16711 -11.96325 -11.60072 -11.26483 -11.14578 -11.09986 -10.86302 -10.74511 -10.31540 -9.85927 -9.72988 -9.40085 -9.04056 -8.82576 -8.72424 -8.03730 -7.20938 -6.19284 -4.20908 1.02483 1.17602 2.17639 2.65045 2.80286 3.15676 3.19990 3.24312 3.28096 3.58073 3.71665 4.04577 4.26560 4.29789 4.58891 4.67618 4.75974 4.93475 5.08622 5.11465 5.22261 5.33555 5.38781 5.45373 5.53723 5.60039 5.75939 5.79152 5.97727 6.08803 6.19920 6.29027 6.30910 6.38936 6.42237 6.43683 6.62867 6.74758 6.89102 7.32327 7.44669 7.86373 7.87788 7.99247 8.39404 8.73392 8.92120 9.36120 10.93501 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.019442 B = 0.003090 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.868077 B = 9060.467204 C = 9783.392257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.055 4.055 3 C -0.122 4.122 4 C -0.109 4.109 5 C -0.123 4.123 6 C -0.099 4.099 7 C -0.096 4.096 8 C 0.229 3.771 9 H 0.128 0.872 10 N -0.699 5.699 11 C 0.310 3.690 12 C -0.330 4.330 13 C 0.071 3.929 14 N -0.324 5.324 15 C 0.233 3.767 16 C -0.532 4.532 17 H 0.086 0.914 18 C 0.075 3.925 19 N -0.889 5.889 20 Si 0.874 3.126 21 H -0.272 1.272 22 H -0.265 1.265 23 H -0.281 1.281 24 N -0.316 5.316 25 C 0.458 3.542 26 O -0.493 6.493 27 O -0.516 6.516 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.406 0.594 36 H 0.129 0.871 37 H 0.166 0.834 38 H 0.051 0.949 39 H 0.036 0.964 40 H 0.267 0.733 41 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.437 18.569 15.411 25.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.056 4.056 3 C -0.140 4.140 4 C -0.127 4.127 5 C -0.141 4.141 6 C -0.117 4.117 7 C -0.097 4.097 8 C 0.119 3.881 9 H 0.145 0.855 10 N -0.343 5.343 11 C 0.054 3.946 12 C -0.363 4.363 13 C -0.080 4.080 14 N -0.103 5.103 15 C 0.114 3.886 16 C -0.570 4.570 17 H 0.104 0.896 18 C -0.128 4.128 19 N -0.526 5.526 20 Si 0.700 3.300 21 H -0.197 1.197 22 H -0.190 1.190 23 H -0.207 1.207 24 N -0.146 5.146 25 C 0.296 3.704 26 O -0.378 6.378 27 O -0.327 6.327 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.244 0.756 36 H 0.147 0.853 37 H 0.183 0.817 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -6.144 17.664 14.574 23.711 hybrid contribution -0.678 -0.917 0.883 1.442 sum -6.823 16.748 15.457 23.790 Atomic orbital electron populations 1.20930 0.90684 1.02881 1.03300 1.19663 0.96353 0.91909 0.97678 1.21003 0.94227 0.97300 1.01442 1.21200 0.94371 0.98101 0.99075 1.21102 1.00133 0.92146 1.00749 1.20958 0.93357 0.98702 0.98690 1.19323 0.93781 0.92447 1.04186 1.18836 0.96712 0.85433 0.87116 0.85502 1.43045 1.07346 1.22141 1.61757 1.19040 0.90767 0.89507 0.95305 1.20695 0.94208 1.03404 1.17966 1.22300 0.91268 0.95532 0.98922 1.48574 1.01995 1.18970 1.40778 1.20005 0.98483 0.78367 0.91772 1.21125 1.30688 0.97936 1.07237 0.89597 1.24836 0.94497 0.98741 0.94732 1.69877 1.35125 1.33148 1.14460 0.86895 0.79755 0.85022 0.78294 1.19738 1.19000 1.20652 1.77504 1.13608 1.02744 1.20779 1.24536 0.74809 0.81686 0.89368 1.90755 1.49175 1.24210 1.73656 1.84559 1.66840 1.52155 1.29162 0.89764 0.91363 0.91255 0.85688 0.85890 0.85676 0.85739 0.75598 0.85293 0.81700 0.93119 0.94597 0.92247 0.73732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 9.00 36.00 0.32 -0.59 16 2 C -0.06 -0.53 5.88 -104.63 -0.62 -1.15 16 3 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 4 C -0.11 -0.93 10.05 -39.58 -0.40 -1.33 16 5 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 6 C -0.10 -1.11 9.23 -39.58 -0.37 -1.47 16 7 C -0.10 -1.09 4.96 -104.62 -0.52 -1.61 16 8 C 0.23 2.91 2.28 -70.23 -0.16 2.75 16 9 H 0.13 1.48 4.94 -51.93 -0.26 1.23 16 10 N -0.70 -11.33 4.67 -55.83 -0.26 -11.59 16 11 C 0.31 6.18 8.15 -154.55 -1.26 4.92 16 12 C -0.33 -5.93 9.91 -39.82 -0.39 -6.32 16 13 C 0.07 1.34 11.43 -17.24 -0.20 1.14 16 14 N -0.32 -7.47 3.67 -62.56 -0.23 -7.70 16 15 C 0.23 5.65 5.33 -5.19 -0.03 5.62 16 16 C -0.53 -15.27 9.79 -34.44 -0.34 -15.61 16 17 H 0.09 2.80 8.06 -52.49 -0.42 2.37 16 18 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 19 N -0.89 -26.97 13.96 55.43 0.77 -26.20 16 20 Si 0.87 20.51 27.47 -169.99 -4.67 15.84 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.27 -5.77 6.54 56.52 0.37 -5.41 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 N -0.32 -7.52 12.42 31.41 0.39 -7.13 16 25 C 0.46 5.90 7.68 36.01 0.28 6.18 16 26 O -0.49 -8.34 17.19 -18.76 -0.32 -8.67 16 27 O -0.52 -4.58 11.98 -39.24 -0.47 -5.05 16 28 H 0.08 0.58 7.41 -51.92 -0.38 0.20 16 29 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.07 0.54 5.99 -51.93 -0.31 0.23 16 31 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.12 1.39 6.17 -52.49 -0.32 1.06 16 35 H 0.41 6.37 6.44 -40.82 -0.26 6.11 16 36 H 0.13 1.88 7.38 -52.49 -0.39 1.50 16 37 H 0.17 2.43 8.06 -52.49 -0.42 2.00 16 38 H 0.05 1.12 7.13 -51.93 -0.37 0.75 16 39 H 0.04 0.87 7.57 -51.93 -0.39 0.48 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.40 2.07 9.10 45.56 0.41 2.48 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -36.25 349.83 -8.05 -44.30 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -3.98 Total: 9.34 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -4.55 Total: -8.41 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 0.67 Total: -52.62 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.79 Total: -13.72 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.25 -8.05 -44.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600574270.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.611 kcal (2) G-P(sol) polarization free energy of solvation -36.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds