Wall clock time and date at job start Tue Mar 31 2020 10:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48498 * 109.46812 * 274.98653 * 3 2 1 5 5 H 1.48497 * 109.46990 * 34.98672 * 3 2 1 6 6 H 1.48502 * 109.47209 * 154.98684 * 3 2 1 7 7 C 1.38817 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00353 * 153.24983 * 7 2 1 9 9 N 1.36936 * 119.99501 * 333.24713 * 7 2 1 10 10 C 1.46500 * 120.00539 * 350.54833 * 9 7 2 11 11 C 1.53003 * 109.46850 * 96.03290 * 10 9 7 12 12 C 1.50696 * 109.47148 * 185.24859 * 11 10 9 13 13 O 1.20829 * 119.99785 * 359.97438 * 12 11 10 14 14 O 1.34232 * 120.00330 * 180.02562 * 12 11 10 15 15 C 1.46507 * 119.99527 * 170.55061 * 9 7 2 16 16 C 1.50699 * 109.47005 * 95.30909 * 15 9 7 17 17 N 1.30527 * 125.71255 * 94.13219 * 16 15 9 18 18 C 1.34131 * 109.34504 * 180.16309 * 17 16 15 19 19 C 1.34653 * 108.19669 * 359.62014 * 18 17 16 20 20 N 1.35833 * 125.71887 * 273.88110 * 16 15 9 21 21 C 1.40238 * 126.47234 * 0.02562 * 20 16 15 22 22 C 1.38813 * 120.06362 * 304.03527 * 21 20 16 23 23 C 1.38132 * 119.93226 * 179.70085 * 22 21 20 24 24 C 1.38274 * 120.06119 * 0.57397 * 23 22 21 25 25 C 1.38273 * 120.13087 * 359.72251 * 24 23 22 26 26 C 1.38125 * 120.06875 * 359.97438 * 25 24 23 27 27 H 0.96994 * 120.00236 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47549 * 216.03064 * 10 9 7 29 29 H 1.09000 * 109.47140 * 336.03492 * 10 9 7 30 30 H 1.08998 * 109.47046 * 305.24468 * 11 10 9 31 31 H 1.09004 * 109.47338 * 65.24421 * 11 10 9 32 32 H 0.96695 * 117.00454 * 179.97438 * 14 12 11 33 33 H 1.08995 * 109.46915 * 335.30770 * 15 9 7 34 34 H 1.09003 * 109.46733 * 215.31094 * 15 9 7 35 35 H 1.08003 * 125.89813 * 179.87766 * 18 17 16 36 36 H 1.08005 * 126.58250 * 180.20123 * 19 18 17 37 37 H 1.07999 * 120.03568 * 359.97438 * 22 21 20 38 38 H 1.08005 * 119.96613 * 180.27586 * 23 22 21 39 39 H 1.08003 * 119.93054 * 179.70593 * 24 23 22 40 40 H 1.08003 * 119.96606 * 179.97438 * 25 24 23 41 41 H 1.07993 * 120.03259 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1072 -1.3948 5 1 1.5042 2.6199 0.8028 6 1 3.5964 1.4122 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0036 -1.2521 -0.4215 9 7 1.4355 -2.3248 0.5328 10 6 0.1835 -2.2195 1.2861 11 6 -0.9958 -2.5265 0.3608 12 6 -2.2882 -2.2932 1.0999 13 8 -2.2682 -1.9201 2.2489 14 8 -3.4616 -2.5008 0.4820 15 6 2.0728 -3.6313 0.3501 16 6 2.9289 -3.9448 1.5500 17 7 2.5565 -4.6376 2.5916 18 6 3.5737 -4.7117 3.4628 19 6 4.6226 -4.0473 2.9419 20 7 4.2189 -3.5578 1.7266 21 6 4.9914 -2.7998 0.8348 22 6 5.1655 -3.2300 -0.4735 23 6 5.9219 -2.4782 -1.3514 24 6 6.5151 -1.3043 -0.9248 25 6 6.3484 -0.8764 0.3795 26 6 5.5881 -1.6208 1.2601 27 1 -0.4850 0.8400 0.0004 28 1 0.1940 -2.9329 2.1101 29 1 0.0813 -1.2089 1.6817 30 1 -0.9529 -1.8738 -0.5111 31 1 -0.9439 -3.5666 0.0390 32 1 -4.2638 -2.3381 0.9969 33 1 2.6949 -3.6101 -0.5446 34 1 1.3054 -4.3977 0.2410 35 1 3.5558 -5.2204 4.4154 36 1 5.5953 -3.9233 3.3948 37 1 4.7065 -4.1494 -0.8058 38 1 6.0540 -2.8102 -2.3706 39 1 7.1099 -0.7205 -1.6117 40 1 6.8133 0.0407 0.7099 41 1 5.4579 -1.2859 2.2786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072123.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:46 Heat of formation + Delta-G solvation = 32.132895 kcal Electronic energy + Delta-G solvation = -26735.922447 eV Core-core repulsion = 23004.167249 eV Total energy + Delta-G solvation = -3731.755198 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.76058 -39.33403 -38.78216 -36.17627 -35.23223 -33.63157 -31.83896 -30.96635 -30.57286 -29.19448 -28.69843 -25.74750 -24.54856 -22.93452 -22.69066 -21.61344 -20.60556 -19.96728 -19.33126 -17.58936 -17.36653 -16.59723 -16.20297 -15.73893 -15.35453 -15.22040 -14.76836 -14.49052 -14.16034 -13.86491 -13.53426 -13.38253 -13.36682 -13.06360 -12.91402 -12.52926 -12.22546 -12.04507 -11.63137 -11.43262 -11.17220 -11.05667 -10.88628 -10.79530 -10.61196 -10.27416 -9.96328 -9.79446 -9.67598 -9.54538 -9.41153 -8.86054 -8.55891 -8.39540 -7.87999 -7.13255 -5.94117 -3.21504 1.24795 1.46349 2.53649 3.15997 3.18414 3.32171 3.42285 3.43270 3.62785 3.83221 3.97139 4.45465 4.96607 4.99363 5.05715 5.11022 5.19907 5.34424 5.45752 5.48604 5.58927 5.73916 5.85943 5.94834 6.04351 6.15130 6.28605 6.31723 6.36800 6.39700 6.43245 6.55904 6.72705 6.79505 6.84514 6.91654 7.19394 7.23682 7.44768 7.65245 7.78737 7.81143 8.19308 8.63582 8.75380 9.08010 9.70115 10.14822 11.12882 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011834 B = 0.005874 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.531802 B = 4765.329998 C = 6284.539558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.009 3.991 3 Si 0.888 3.112 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.076 0.924 9 N -0.578 5.578 10 C 0.185 3.815 11 C -0.115 4.115 12 C 0.489 3.511 13 O -0.530 6.530 14 O -0.530 6.530 15 C 0.218 3.782 16 C 0.230 3.770 17 N -0.495 5.495 18 C -0.029 4.029 19 C -0.072 4.072 20 N -0.411 5.411 21 C 0.142 3.858 22 C -0.111 4.111 23 C -0.104 4.104 24 C -0.119 4.119 25 C -0.104 4.104 26 C -0.104 4.104 27 H 0.255 0.745 28 H 0.027 0.973 29 H 0.093 0.907 30 H 0.139 0.861 31 H 0.066 0.934 32 H 0.392 0.608 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.982 -5.704 -1.493 10.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.189 4.189 3 Si 0.718 3.282 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.094 0.906 9 N -0.297 5.297 10 C 0.059 3.941 11 C -0.155 4.155 12 C 0.333 3.667 13 O -0.419 6.419 14 O -0.341 6.341 15 C 0.088 3.912 16 C -0.035 4.035 17 N -0.214 5.214 18 C -0.176 4.176 19 C -0.203 4.203 20 N -0.091 5.091 21 C 0.051 3.949 22 C -0.131 4.131 23 C -0.122 4.122 24 C -0.138 4.138 25 C -0.123 4.123 26 C -0.123 4.123 27 H 0.066 0.934 28 H 0.045 0.955 29 H 0.112 0.888 30 H 0.157 0.843 31 H 0.084 0.916 32 H 0.249 0.751 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.181 0.819 36 H 0.182 0.818 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.528 -5.814 -1.357 10.410 hybrid contribution 0.616 1.580 0.534 1.778 sum 9.144 -4.234 -0.823 10.110 Atomic orbital electron populations 1.70026 1.05222 1.25668 1.52784 1.24638 0.95064 0.97940 1.01231 0.86484 0.79808 0.84406 0.77552 1.21611 1.21584 1.20402 1.19206 0.98258 0.86199 1.34780 0.90576 1.44103 1.23105 1.01807 1.60660 1.20562 0.81679 1.02005 0.89855 1.22260 0.87588 1.01960 1.03649 1.24223 0.85315 0.71779 0.85423 1.90618 1.87903 1.43824 1.19553 1.84640 1.17217 1.82463 1.49810 1.19315 0.93390 0.89509 0.89023 1.25771 0.82173 0.95502 1.00075 1.70309 1.28999 1.19936 1.02116 1.22186 0.90053 1.04792 1.00568 1.22584 1.01885 1.06929 0.88876 1.43081 1.11362 1.39691 1.15011 1.17557 0.95288 0.92095 0.89936 1.21041 0.99257 1.00555 0.92198 1.20963 0.97097 0.94923 0.99249 1.21171 1.00070 0.96632 0.95893 1.20985 0.98513 0.99227 0.93589 1.21043 0.97658 0.92816 1.00793 0.93431 0.95510 0.88844 0.84335 0.91604 0.75115 0.91206 0.90989 0.81931 0.81755 0.85522 0.85393 0.85812 0.85662 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.84 8.74 55.49 0.48 -23.36 16 2 C 0.01 0.24 4.83 -17.43 -0.08 0.16 16 3 Si 0.89 20.96 29.63 -169.99 -5.04 15.92 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.26 -6.41 9.65 -15.06 -0.15 -6.56 16 8 H 0.08 1.89 7.58 -52.49 -0.40 1.49 16 9 N -0.58 -13.50 2.52 -174.61 -0.44 -13.94 16 10 C 0.18 4.48 4.25 -4.04 -0.02 4.46 16 11 C -0.11 -2.51 5.54 -27.88 -0.15 -2.66 16 12 C 0.49 10.33 8.33 36.00 0.30 10.63 16 13 O -0.53 -12.64 16.67 -18.75 -0.31 -12.96 16 14 O -0.53 -9.13 13.42 -39.26 -0.53 -9.65 16 15 C 0.22 4.37 5.94 -5.19 -0.03 4.34 16 16 C 0.23 4.58 7.38 -154.67 -1.14 3.44 16 17 N -0.50 -10.11 11.25 -10.63 -0.12 -10.23 16 18 C -0.03 -0.50 11.85 -17.82 -0.21 -0.71 16 19 C -0.07 -1.16 11.37 -16.47 -0.19 -1.35 16 20 N -0.41 -7.38 2.85 -57.84 -0.16 -7.55 16 21 C 0.14 2.35 5.33 -83.58 -0.45 1.91 16 22 C -0.11 -1.63 8.53 -39.41 -0.34 -1.96 16 23 C -0.10 -1.31 10.04 -39.61 -0.40 -1.71 16 24 C -0.12 -1.49 10.04 -39.56 -0.40 -1.89 16 25 C -0.10 -1.43 10.04 -39.61 -0.40 -1.83 16 26 C -0.10 -1.64 9.79 -39.41 -0.39 -2.02 16 27 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.03 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.09 2.60 5.80 -51.93 -0.30 2.30 16 30 H 0.14 3.34 6.37 -51.93 -0.33 3.01 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.39 4.83 9.10 45.56 0.41 5.25 16 33 H 0.07 1.30 5.97 -51.93 -0.31 0.99 16 34 H 0.07 1.37 8.11 -51.93 -0.42 0.95 16 35 H 0.16 2.28 8.06 -52.48 -0.42 1.86 16 36 H 0.17 2.08 8.06 -52.48 -0.42 1.66 16 37 H 0.13 1.73 7.44 -52.49 -0.39 1.34 16 38 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 39 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 40 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 41 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 352.60 15.07 5.31 5.31 Total: -1.00 -31.64 352.60 -9.09 -40.73 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -4.25 Total: 11.47 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -4.03 Total: 4.24 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.24 Total: -55.07 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.84 Total: -22.61 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.04 Total: 15.92 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.64 -9.09 -40.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072123.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.864 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds