Wall clock time and date at job start Tue Mar 31 2020 10:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48498 * 109.46812 * 274.98653 * 3 2 1 5 5 H 1.48497 * 109.46990 * 34.98672 * 3 2 1 6 6 H 1.48502 * 109.47209 * 154.98684 * 3 2 1 7 7 C 1.38817 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00353 * 153.24983 * 7 2 1 9 9 N 1.36936 * 119.99501 * 333.24713 * 7 2 1 10 10 C 1.46500 * 120.00539 * 350.54833 * 9 7 2 11 11 C 1.53003 * 109.46850 * 96.03290 * 10 9 7 12 12 C 1.50696 * 109.47148 * 185.24859 * 11 10 9 13 13 O 1.20829 * 119.99785 * 359.97438 * 12 11 10 14 14 O 1.34232 * 120.00330 * 180.02562 * 12 11 10 15 15 C 1.46507 * 119.99527 * 170.55061 * 9 7 2 16 16 C 1.50699 * 109.47005 * 95.30909 * 15 9 7 17 17 N 1.30527 * 125.71255 * 94.13219 * 16 15 9 18 18 C 1.34131 * 109.34504 * 180.16309 * 17 16 15 19 19 C 1.34653 * 108.19669 * 359.62014 * 18 17 16 20 20 N 1.35833 * 125.71887 * 273.88110 * 16 15 9 21 21 C 1.40238 * 126.47234 * 0.02562 * 20 16 15 22 22 C 1.38813 * 120.06362 * 304.03527 * 21 20 16 23 23 C 1.38132 * 119.93226 * 179.70085 * 22 21 20 24 24 C 1.38274 * 120.06119 * 0.57397 * 23 22 21 25 25 C 1.38273 * 120.13087 * 359.72251 * 24 23 22 26 26 C 1.38125 * 120.06875 * 359.97438 * 25 24 23 27 27 H 0.96994 * 120.00236 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47549 * 216.03064 * 10 9 7 29 29 H 1.09000 * 109.47140 * 336.03492 * 10 9 7 30 30 H 1.08998 * 109.47046 * 305.24468 * 11 10 9 31 31 H 1.09004 * 109.47338 * 65.24421 * 11 10 9 32 32 H 0.96695 * 117.00454 * 179.97438 * 14 12 11 33 33 H 1.08995 * 109.46915 * 335.30770 * 15 9 7 34 34 H 1.09003 * 109.46733 * 215.31094 * 15 9 7 35 35 H 1.08003 * 125.89813 * 179.87766 * 18 17 16 36 36 H 1.08005 * 126.58250 * 180.20123 * 19 18 17 37 37 H 1.07999 * 120.03568 * 359.97438 * 22 21 20 38 38 H 1.08005 * 119.96613 * 180.27586 * 23 22 21 39 39 H 1.08003 * 119.93054 * 179.70593 * 24 23 22 40 40 H 1.08003 * 119.96606 * 179.97438 * 25 24 23 41 41 H 1.07993 * 120.03259 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1072 -1.3948 5 1 1.5042 2.6199 0.8028 6 1 3.5964 1.4122 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0036 -1.2521 -0.4215 9 7 1.4355 -2.3248 0.5328 10 6 0.1835 -2.2195 1.2861 11 6 -0.9958 -2.5265 0.3608 12 6 -2.2882 -2.2932 1.0999 13 8 -2.2682 -1.9201 2.2489 14 8 -3.4616 -2.5008 0.4820 15 6 2.0728 -3.6313 0.3501 16 6 2.9289 -3.9448 1.5500 17 7 2.5565 -4.6376 2.5916 18 6 3.5737 -4.7117 3.4628 19 6 4.6226 -4.0473 2.9419 20 7 4.2189 -3.5578 1.7266 21 6 4.9914 -2.7998 0.8348 22 6 5.1655 -3.2300 -0.4735 23 6 5.9219 -2.4782 -1.3514 24 6 6.5151 -1.3043 -0.9248 25 6 6.3484 -0.8764 0.3795 26 6 5.5881 -1.6208 1.2601 27 1 -0.4850 0.8400 0.0004 28 1 0.1940 -2.9329 2.1101 29 1 0.0813 -1.2089 1.6817 30 1 -0.9529 -1.8738 -0.5111 31 1 -0.9439 -3.5666 0.0390 32 1 -4.2638 -2.3381 0.9969 33 1 2.6949 -3.6101 -0.5446 34 1 1.3054 -4.3977 0.2410 35 1 3.5558 -5.2204 4.4154 36 1 5.5953 -3.9233 3.3948 37 1 4.7065 -4.1494 -0.8058 38 1 6.0540 -2.8102 -2.3706 39 1 7.1099 -0.7205 -1.6117 40 1 6.8133 0.0407 0.7099 41 1 5.4579 -1.2859 2.2786 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072123.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:45 Heat of formation + Delta-G solvation = 14.799428 kcal Electronic energy + Delta-G solvation = -26736.674083 eV Core-core repulsion = 23004.167249 eV Total energy + Delta-G solvation = -3732.506834 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.10916 -41.00374 -39.87513 -37.95279 -36.85825 -34.88022 -33.62938 -32.48795 -31.90465 -30.58049 -30.06861 -27.37990 -26.36824 -24.17683 -23.80800 -23.28435 -21.90892 -21.62259 -20.72751 -19.11388 -18.88396 -18.34160 -17.41417 -17.25476 -17.01213 -16.67470 -16.44291 -15.68706 -15.58031 -15.48489 -14.95587 -14.81470 -14.69656 -14.42418 -14.28721 -13.85941 -13.79602 -13.62051 -13.33361 -12.91238 -12.73561 -12.58289 -12.44370 -12.35315 -12.21489 -12.07487 -11.85028 -11.49885 -11.35871 -11.14193 -10.81621 -10.46176 -9.92807 -9.62649 -9.23816 -9.00063 -7.89245 -5.16303 0.13285 0.40026 1.20196 1.43267 1.47365 1.50131 1.55970 1.92288 2.17668 2.43758 2.56527 2.76625 3.26467 3.70450 3.78027 3.91456 3.92925 3.97633 4.22052 4.38289 4.43048 4.46884 4.49052 4.59335 4.62452 4.76203 4.84679 4.86488 4.90994 5.01054 5.03006 5.21792 5.40908 5.52505 5.53456 5.56194 5.62966 5.76582 5.86648 5.88012 5.94086 6.25361 6.47925 7.10980 7.21912 7.24682 7.81047 8.24571 9.15746 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011834 B = 0.005874 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.531802 B = 4765.329998 C = 6284.539558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.038 4.038 3 Si 0.935 3.065 4 H -0.284 1.284 5 H -0.306 1.306 6 H -0.271 1.271 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.588 5.588 10 C 0.200 3.800 11 C -0.106 4.106 12 C 0.496 3.504 13 O -0.563 6.563 14 O -0.516 6.516 15 C 0.222 3.778 16 C 0.203 3.797 17 N -0.524 5.524 18 C -0.048 4.048 19 C -0.061 4.061 20 N -0.410 5.410 21 C 0.113 3.887 22 C -0.122 4.122 23 C -0.101 4.101 24 C -0.115 4.115 25 C -0.111 4.111 26 C -0.124 4.124 27 H 0.245 0.755 28 H 0.013 0.987 29 H 0.054 0.946 30 H 0.121 0.879 31 H 0.089 0.911 32 H 0.418 0.582 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.190 0.810 36 H 0.199 0.801 37 H 0.130 0.870 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.145 0.855 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.641 -5.996 -2.612 12.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.234 4.234 3 Si 0.765 3.235 4 H -0.211 1.211 5 H -0.234 1.234 6 H -0.196 1.196 7 C -0.373 4.373 8 H 0.097 0.903 9 N -0.308 5.308 10 C 0.073 3.927 11 C -0.145 4.145 12 C 0.341 3.659 13 O -0.454 6.454 14 O -0.329 6.329 15 C 0.093 3.907 16 C -0.061 4.061 17 N -0.243 5.243 18 C -0.195 4.195 19 C -0.192 4.192 20 N -0.090 5.090 21 C 0.023 3.977 22 C -0.141 4.141 23 C -0.119 4.119 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.143 4.143 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.139 0.861 31 H 0.108 0.892 32 H 0.278 0.722 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.207 0.793 36 H 0.216 0.784 37 H 0.148 0.852 38 H 0.177 0.823 39 H 0.175 0.825 40 H 0.163 0.837 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.197 -6.129 -2.501 12.158 hybrid contribution 0.164 1.604 0.884 1.839 sum 10.362 -4.525 -1.617 11.422 Atomic orbital electron populations 1.70156 1.05944 1.25122 1.54510 1.25181 0.95699 1.00039 1.02462 0.85724 0.78896 0.81603 0.77274 1.21128 1.23376 1.19646 1.19342 0.97976 0.86679 1.33313 0.90282 1.44157 1.23247 1.02834 1.60518 1.20181 0.83297 0.99094 0.90095 1.21976 0.87534 1.02830 1.02209 1.23955 0.86195 0.71052 0.84720 1.90612 1.88542 1.45367 1.20920 1.84549 1.17258 1.81591 1.49505 1.19353 0.93612 0.87942 0.89758 1.25386 0.83329 0.97244 1.00150 1.70237 1.30568 1.20630 1.02910 1.22707 0.89727 1.05676 1.01396 1.23167 1.02907 1.05140 0.87973 1.43169 1.10911 1.39269 1.15646 1.17836 0.96373 0.92822 0.90648 1.21231 0.99865 1.01163 0.91824 1.21378 0.95736 0.94514 1.00282 1.21614 0.99371 0.96520 0.95805 1.21317 0.97998 0.99671 0.93975 1.21138 0.98884 0.93266 1.01043 0.94506 0.96872 0.92773 0.86143 0.89249 0.72205 0.89989 0.90430 0.79349 0.78440 0.85185 0.82323 0.82508 0.83691 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.69 8.74 21.65 0.19 -49.50 16 2 C -0.04 -2.01 4.83 84.86 0.41 -1.60 16 3 Si 0.94 43.22 29.63 68.60 2.03 45.26 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.31 -14.89 7.11 99.48 0.71 -14.19 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.24 -12.21 9.65 84.03 0.81 -11.40 16 8 H 0.08 3.86 7.58 -2.91 -0.02 3.83 16 9 N -0.59 -27.68 2.52 -706.33 -1.78 -29.46 16 10 C 0.20 9.90 4.25 86.38 0.37 10.26 16 11 C -0.11 -4.64 5.54 29.85 0.17 -4.47 16 12 C 0.50 20.87 8.33 71.23 0.59 21.46 16 13 O -0.56 -27.18 16.67 21.95 0.37 -26.81 16 14 O -0.52 -16.94 13.42 -51.44 -0.69 -17.63 16 15 C 0.22 8.89 5.94 85.63 0.51 9.39 16 16 C 0.20 8.10 7.38 137.87 1.02 9.12 16 17 N -0.52 -21.44 11.25 -187.56 -2.11 -23.55 16 18 C -0.05 -1.64 11.85 83.52 0.99 -0.65 16 19 C -0.06 -1.89 11.37 83.05 0.94 -0.95 16 20 N -0.41 -14.48 2.85 -336.91 -0.96 -15.44 16 21 C 0.11 3.63 5.33 38.07 0.20 3.84 16 22 C -0.12 -3.35 8.53 22.38 0.19 -3.16 16 23 C -0.10 -2.23 10.04 22.25 0.22 -2.01 16 24 C -0.12 -2.46 10.04 22.29 0.22 -2.24 16 25 C -0.11 -2.78 10.04 22.25 0.22 -2.55 16 26 C -0.12 -3.77 9.79 22.38 0.22 -3.55 16 27 H 0.25 13.47 8.31 -92.71 -0.77 12.69 16 28 H 0.01 0.67 8.12 -2.39 -0.02 0.65 16 29 H 0.05 3.12 5.80 -2.39 -0.01 3.11 16 30 H 0.12 5.86 6.37 -2.39 -0.02 5.84 16 31 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 32 H 0.42 9.41 9.10 -74.06 -0.67 8.73 16 33 H 0.08 3.01 5.97 -2.39 -0.01 3.00 16 34 H 0.08 2.95 8.11 -2.39 -0.02 2.93 16 35 H 0.19 5.05 8.06 -2.91 -0.02 5.02 16 36 H 0.20 4.58 8.06 -2.91 -0.02 4.55 16 37 H 0.13 3.38 7.44 -2.91 -0.02 3.36 16 38 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 39 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 40 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 41 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -69.46 352.60 4.53 -64.93 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.39 Total: 30.71 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: 7.09 Total: 21.50 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -4.66 Total: -117.96 kcal Atomic # 8 Polarization: -44.11 SS G_CDS: -0.32 Total: -44.44 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.26 kcal Total: -69.46 4.53 -64.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072123.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.727 kcal (2) G-P(sol) polarization free energy of solvation -69.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds