Wall clock time and date at job start Tue Mar 31 2020 10:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31806 * 120.82953 * 2 1 4 4 C 1.32488 * 121.62461 * 180.27708 * 3 2 1 5 5 C 1.50698 * 118.57297 * 179.70643 * 4 3 2 6 6 N 1.46500 * 109.47206 * 269.73467 * 5 4 3 7 7 C 1.36932 * 120.00349 * 270.00117 * 6 5 4 8 8 H 1.07994 * 120.00076 * 141.65200 * 7 6 5 9 9 C 1.38817 * 119.99681 * 321.65251 * 7 6 5 10 10 N 1.31614 * 120.00275 * 338.23474 * 9 7 6 11 11 Si 1.86803 * 119.99691 * 158.23823 * 9 7 6 12 12 H 1.48496 * 109.47604 * 90.00045 * 11 9 7 13 13 H 1.48506 * 109.46884 * 210.00083 * 11 9 7 14 14 H 1.48505 * 109.47166 * 329.99378 * 11 9 7 15 15 C 1.46501 * 119.99494 * 89.99904 * 6 5 4 16 16 C 1.52995 * 109.47209 * 264.78591 * 15 6 5 17 17 C 1.50702 * 109.47344 * 180.02562 * 16 15 6 18 18 O 1.20829 * 119.99889 * 0.02562 * 17 16 15 19 19 O 1.34228 * 120.00366 * 179.97438 * 17 16 15 20 20 N 1.31157 * 122.85240 * 359.43506 * 4 3 2 21 21 C 1.33853 * 120.25479 * 0.27156 * 20 4 3 22 22 C 1.40273 * 122.05436 * 180.02562 * 21 20 4 23 23 C 1.36214 * 119.57890 * 179.97438 * 22 21 20 24 24 C 1.39352 * 121.10258 * 359.97438 * 23 22 21 25 25 C 1.36220 * 120.96076 * 0.02562 * 24 23 22 26 26 C 1.40283 * 119.47932 * 359.97438 * 25 24 23 27 27 H 1.09005 * 109.47278 * 270.27385 * 1 2 3 28 28 H 1.08998 * 109.47467 * 30.27194 * 1 2 3 29 29 H 1.09001 * 109.47135 * 150.27347 * 1 2 3 30 30 H 1.09001 * 109.47141 * 149.73708 * 5 4 3 31 31 H 1.09000 * 109.46809 * 29.74103 * 5 4 3 32 32 H 0.97001 * 120.00186 * 180.02562 * 10 9 7 33 33 H 1.09000 * 109.47472 * 24.78632 * 15 6 5 34 34 H 1.08999 * 109.46940 * 144.78546 * 15 6 5 35 35 H 1.08998 * 109.47077 * 299.99835 * 16 15 6 36 36 H 1.08993 * 109.47439 * 60.00479 * 16 15 6 37 37 H 0.96696 * 116.99885 * 180.02562 * 19 17 16 38 38 H 1.07999 * 120.20780 * 359.95350 * 22 21 20 39 39 H 1.08001 * 119.44602 * 179.97438 * 23 22 21 40 40 H 1.07997 * 119.51738 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.26025 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1824 1.1318 0.0000 4 6 3.5072 1.1502 -0.0055 5 6 4.2095 2.4835 -0.0118 6 7 4.4371 2.9090 -1.3951 7 6 5.5926 2.5552 -2.0390 8 1 5.5675 2.2861 -3.0846 9 6 6.7963 2.5424 -1.3476 10 7 6.9303 3.2506 -0.2464 11 14 8.2260 1.5201 -1.9805 12 1 9.0505 2.3401 -2.9039 13 1 9.0603 1.0738 -0.8358 14 1 7.7037 0.3334 -2.7046 15 6 3.4282 3.7129 -2.0895 16 6 2.5216 2.7947 -2.9114 17 6 1.4842 3.6217 -3.6262 18 8 1.4717 4.8225 -3.4924 19 8 0.5747 3.0246 -4.4124 20 7 4.2339 0.0584 -0.0003 21 6 3.6451 -1.1437 0.0054 22 6 4.3853 -2.3352 0.0116 23 6 3.7339 -3.5314 0.0178 24 6 2.3417 -3.5930 0.0187 25 6 1.5900 -2.4570 0.0129 26 6 2.2275 -1.2074 0.0064 27 1 -0.3634 0.0049 1.0277 28 1 -0.3634 0.8875 -0.5180 29 1 -0.3633 -0.8924 -0.5096 30 1 5.1662 2.3927 0.5024 31 1 3.5914 3.2221 0.4985 32 1 7.7716 3.2419 0.2365 33 1 2.8291 4.2551 -1.3580 34 1 3.9228 4.4231 -2.7522 35 1 3.1207 2.2526 -3.6430 36 1 2.0270 2.0845 -2.2488 37 1 -0.0702 3.5967 -4.8503 38 1 5.4649 -2.3042 0.0110 39 1 4.3059 -4.4475 0.0221 40 1 1.8517 -4.5553 0.0242 41 1 0.5117 -2.5178 0.0141 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607956603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:55 Heat of formation + Delta-G solvation = -7.579394 kcal Electronic energy + Delta-G solvation = -26426.681779 eV Core-core repulsion = 22693.204526 eV Total energy + Delta-G solvation = -3733.477252 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94177 -39.84852 -37.58627 -36.11859 -35.59495 -34.46519 -32.12222 -31.56178 -30.56222 -29.67147 -28.31131 -26.63258 -24.86376 -23.66076 -22.86548 -21.49165 -20.90817 -20.01702 -18.11280 -17.77239 -17.62308 -16.75495 -16.18990 -15.71844 -15.59411 -14.88161 -14.71565 -14.57642 -14.11826 -13.79440 -13.67466 -13.44936 -13.10737 -12.96285 -12.59146 -12.43544 -12.30204 -12.18659 -11.82484 -11.55633 -11.37641 -11.29226 -11.18785 -10.82221 -10.69965 -10.37343 -10.33930 -10.23917 -10.12885 -10.05573 -9.93190 -8.89963 -8.60621 -8.56347 -8.00208 -6.78954 -5.93388 -3.48336 0.56313 1.08252 2.20234 2.59065 3.24376 3.35958 3.42322 3.43466 3.49260 4.32996 4.42902 4.51476 4.60067 4.65224 4.83960 4.96852 5.19238 5.28050 5.41316 5.42851 5.48664 5.54773 5.58990 5.63686 5.74911 5.86075 5.96394 6.04038 6.09521 6.25340 6.29095 6.32134 6.48825 6.61554 6.66131 6.74775 6.81372 6.98563 7.03729 7.43771 7.63338 7.73129 8.22116 8.37358 8.86754 9.01349 9.64743 10.19966 11.09471 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.008467 B = 0.006782 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.215000 B = 4127.564526 C = 6515.701232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.203 3.797 3 N -0.519 5.519 4 C 0.325 3.675 5 C 0.201 3.799 6 N -0.559 5.559 7 C -0.268 4.268 8 H 0.060 0.940 9 C 0.032 3.968 10 N -0.874 5.874 11 Si 0.901 3.099 12 H -0.286 1.286 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.163 3.837 16 C -0.136 4.136 17 C 0.482 3.518 18 O -0.520 6.520 19 O -0.526 6.526 20 N -0.489 5.489 21 C 0.166 3.834 22 C -0.101 4.101 23 C -0.091 4.091 24 C -0.140 4.140 25 C -0.075 4.075 26 C -0.180 4.180 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.259 0.741 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.399 0.601 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.655 -10.682 0.063 16.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.041 3.959 3 N -0.234 5.234 4 C 0.056 3.944 5 C 0.072 3.928 6 N -0.277 5.277 7 C -0.397 4.397 8 H 0.078 0.922 9 C -0.171 4.171 10 N -0.513 5.513 11 Si 0.730 3.270 12 H -0.213 1.213 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.036 3.964 16 C -0.177 4.177 17 C 0.325 3.675 18 O -0.409 6.409 19 O -0.337 6.337 20 N -0.204 5.204 21 C 0.037 3.963 22 C -0.120 4.120 23 C -0.113 4.113 24 C -0.158 4.158 25 C -0.095 4.095 26 C -0.185 4.185 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.137 0.863 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.257 0.743 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.513 -9.613 0.425 15.005 hybrid contribution -0.158 -1.313 -0.719 1.505 sum -11.671 -10.926 -0.295 15.990 Atomic orbital electron populations 1.20758 0.88356 1.03774 1.03372 1.22045 0.96814 0.87816 0.89181 1.68171 1.10882 1.29585 1.14739 1.25325 0.85139 0.97336 0.86558 1.20075 0.99787 0.84428 0.88501 1.43691 1.16436 1.56434 1.11102 1.18910 0.83806 1.41610 0.95388 0.92197 1.25128 0.97385 0.97082 0.97504 1.69973 1.25523 1.37182 1.18660 0.86351 0.81871 0.80704 0.78101 1.21268 1.21206 1.20173 1.20710 0.89843 0.90950 0.94875 1.22349 0.94558 1.00740 1.00036 1.24059 0.80187 0.87692 0.75564 1.90676 1.72164 1.16685 1.61328 1.84624 1.43330 1.46212 1.59532 1.68897 1.39521 0.97182 1.14797 1.19202 0.89678 0.93471 0.93989 1.20804 1.00558 0.90255 1.00396 1.20917 0.94568 0.97658 0.98111 1.20813 0.93980 0.98330 1.02669 1.20890 0.99655 0.91152 0.97837 1.19342 0.95523 0.95513 1.08163 0.89819 0.89850 0.90423 0.86316 0.92450 0.93084 0.92887 0.92018 0.88580 0.88334 0.74313 0.84693 0.85616 0.85921 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 9.80 36.00 0.35 -0.80 16 2 C 0.20 3.26 6.90 -81.71 -0.56 2.70 16 3 N -0.52 -9.98 8.98 -6.60 -0.06 -10.03 16 4 C 0.33 7.12 7.10 -157.14 -1.12 6.00 16 5 C 0.20 4.74 5.73 -5.19 -0.03 4.71 16 6 N -0.56 -13.60 2.41 -174.61 -0.42 -14.02 16 7 C -0.27 -7.13 9.44 -15.06 -0.14 -7.27 16 8 H 0.06 1.60 7.92 -52.49 -0.42 1.19 16 9 C 0.03 0.85 4.94 -17.43 -0.09 0.77 16 10 N -0.87 -24.33 11.55 55.49 0.64 -23.69 16 11 Si 0.90 21.59 29.61 -169.99 -5.03 16.56 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.16 3.52 5.01 -4.04 -0.02 3.50 16 16 C -0.14 -2.56 6.11 -27.88 -0.17 -2.73 16 17 C 0.48 8.22 8.33 36.01 0.30 8.52 16 18 O -0.52 -10.09 16.74 -18.75 -0.31 -10.40 16 19 O -0.53 -7.11 13.42 -39.25 -0.53 -7.64 16 20 N -0.49 -10.92 10.33 -8.74 -0.09 -11.01 16 21 C 0.17 3.15 6.62 -84.82 -0.56 2.59 16 22 C -0.10 -1.62 10.01 -39.55 -0.40 -2.01 16 23 C -0.09 -1.12 9.94 -39.90 -0.40 -1.52 16 24 C -0.14 -1.56 9.95 -39.89 -0.40 -1.95 16 25 C -0.07 -0.92 9.34 -39.54 -0.37 -1.29 16 26 C -0.18 -2.92 5.74 -106.83 -0.61 -3.54 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.66 6.58 -51.93 -0.34 0.32 16 30 H 0.12 3.15 5.59 -51.93 -0.29 2.86 16 31 H 0.06 1.29 7.86 -51.93 -0.41 0.88 16 32 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.05 1.12 7.79 -51.93 -0.40 0.72 16 34 H 0.06 1.39 8.04 -51.93 -0.42 0.97 16 35 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 36 H 0.10 1.89 6.75 -51.93 -0.35 1.54 16 37 H 0.40 3.45 9.10 45.56 0.41 3.86 16 38 H 0.14 2.12 8.06 -52.49 -0.42 1.69 16 39 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.13 1.15 6.54 -52.48 -0.34 0.81 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -32.40 352.39 -8.93 -41.33 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.23 Total: 5.93 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: -4.21 Total: 7.67 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.07 Total: -58.76 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.84 Total: -18.04 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.40 -8.93 -41.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607956603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.750 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds