Wall clock time and date at job start Tue Mar 31 2020 11:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34846 * 119.68586 * 2 1 4 4 C 1.40573 * 120.34647 * 179.73019 * 3 2 1 5 5 C 1.35895 * 119.72601 * 0.49835 * 4 3 2 6 6 C 1.41189 * 119.34877 * 359.50968 * 5 4 3 7 7 N 1.32234 * 132.04683 * 180.25374 * 6 5 4 8 8 C 1.34578 * 109.02235 * 180.02562 * 7 6 5 9 9 C 1.47591 * 125.91814 * 180.02562 * 8 7 6 10 10 O 1.21588 * 120.00218 * 179.97438 * 9 8 7 11 11 N 1.34781 * 119.99899 * 359.97232 * 9 8 7 12 12 C 1.47427 * 125.64952 * 0.02562 * 11 9 8 13 13 C 1.54907 * 104.83632 * 204.09751 * 12 11 9 14 14 C 1.55163 * 101.57804 * 322.99186 * 13 12 11 15 15 O 1.42896 * 110.71944 * 277.13542 * 14 13 12 16 16 C 1.50700 * 110.71695 * 154.04386 * 14 13 12 17 17 H 1.08008 * 119.99685 * 268.65756 * 16 14 13 18 18 C 1.37880 * 120.00152 * 88.65744 * 16 14 13 19 19 N 1.31510 * 119.99846 * 173.91444 * 18 16 14 20 20 Si 1.86793 * 119.99794 * 353.91671 * 18 16 14 21 21 H 1.48501 * 109.47325 * 86.07108 * 20 18 16 22 22 H 1.48501 * 109.47023 * 206.06887 * 20 18 16 23 23 H 1.48503 * 109.47300 * 326.06825 * 20 18 16 24 24 C 1.47020 * 125.65008 * 179.72163 * 11 9 8 25 25 C 1.36579 * 108.16541 * 359.97438 * 8 7 6 26 26 N 1.36197 * 107.09350 * 0.02562 * 25 8 7 27 27 H 1.08994 * 109.47187 * 270.02402 * 1 2 3 28 28 H 1.09003 * 109.46743 * 30.02084 * 1 2 3 29 29 H 1.09002 * 109.46969 * 150.01915 * 1 2 3 30 30 H 1.07999 * 119.82506 * 359.97438 * 3 2 1 31 31 H 1.07992 * 120.13420 * 180.27995 * 4 3 2 32 32 H 1.07997 * 120.32345 * 179.77733 * 5 4 3 33 33 H 1.08997 * 110.36657 * 322.94187 * 12 11 9 34 34 H 1.09007 * 110.36106 * 85.14631 * 12 11 9 35 35 H 1.08996 * 111.00360 * 81.06292 * 13 12 11 36 36 H 1.09000 * 111.00391 * 204.92331 * 13 12 11 37 37 H 0.96701 * 113.99495 * 174.40990 * 15 14 13 38 38 H 0.97003 * 120.00043 * 179.97438 * 19 18 16 39 39 H 1.09001 * 109.88058 * 298.38902 * 24 11 9 40 40 H 1.08998 * 109.88340 * 59.55189 * 24 11 9 41 41 H 1.07995 * 126.44958 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1748 1.1715 0.0000 4 6 3.5804 1.1877 0.0057 5 6 4.2679 0.0154 0.0010 6 6 3.5563 -1.2040 0.0009 7 7 3.9581 -2.4638 0.0013 8 6 2.8793 -3.2684 0.0005 9 6 2.8998 -4.7441 0.0011 10 8 1.8554 -5.3666 0.0007 11 7 4.0763 -5.4018 0.0021 12 6 5.4108 -4.7753 0.0033 13 6 6.3512 -5.8441 -0.6073 14 6 5.7568 -7.1526 -0.0223 15 8 6.2493 -7.3853 1.2988 16 6 6.0643 -8.3249 -0.9180 17 1 5.3696 -8.6075 -1.6951 18 6 7.2326 -9.0366 -0.7453 19 7 7.4461 -10.1295 -1.4449 20 14 8.5118 -8.4484 0.4822 21 1 8.1842 -8.9777 1.8305 22 1 9.8529 -8.9361 0.0715 23 1 8.5152 -6.9639 0.5206 24 6 4.2413 -6.8626 0.0087 25 6 1.7622 -2.4826 0.0000 26 7 2.1837 -1.1875 0.0001 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6268 2.1021 -0.0004 31 1 4.1118 2.1279 0.0103 32 1 5.3478 0.0167 0.0017 33 1 5.4082 -3.8760 -0.6125 34 1 5.7165 -4.5358 1.0218 35 1 6.2922 -5.8406 -1.6956 36 1 7.3782 -5.6979 -0.2727 37 1 5.8440 -8.1433 1.7417 38 1 8.2682 -10.6301 -1.3238 39 1 3.8002 -7.2815 0.9132 40 1 3.7653 -7.2934 -0.8721 41 1 0.7376 -2.8240 -0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647244819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:43 Heat of formation + Delta-G solvation = 19.382339 kcal Electronic energy + Delta-G solvation = -26007.574197 eV Core-core repulsion = 22275.266094 eV Total energy + Delta-G solvation = -3732.308104 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.08671 -39.54422 -37.92516 -37.22523 -34.75003 -34.42409 -32.31820 -31.71750 -30.17130 -29.55638 -28.25210 -27.63218 -25.79071 -23.82118 -22.95047 -22.34844 -21.41554 -19.71737 -19.16228 -18.16120 -17.51968 -16.79655 -16.70650 -16.39701 -15.45031 -15.31747 -14.99606 -14.80785 -14.56906 -14.48009 -14.09281 -13.80951 -13.39546 -13.20977 -13.15740 -12.69490 -12.63401 -12.27088 -12.03799 -11.93971 -11.73684 -11.54425 -11.41051 -11.24891 -10.95832 -10.47019 -10.32720 -10.21885 -10.04622 -9.61442 -9.15247 -9.05777 -8.59391 -8.46943 -8.15203 -7.98095 -6.15057 -4.26499 0.35413 0.98143 2.04472 2.20306 3.13361 3.39615 3.49474 3.55402 3.69708 3.72195 3.84726 4.04020 4.36568 4.40649 4.53019 4.67744 4.86998 4.91540 5.02517 5.10497 5.11797 5.19605 5.27986 5.35099 5.51132 5.55819 5.71579 5.83375 5.88449 5.97394 6.12499 6.16138 6.19583 6.41096 6.57646 6.67657 6.78434 6.85519 6.91485 7.18230 7.49800 7.53777 8.00383 8.17422 8.51499 8.69463 8.86942 9.46310 10.94042 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027548 B = 0.003228 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.164599 B = 8671.412232 C = 9360.687314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.088 3.912 3 C -0.145 4.145 4 C -0.101 4.101 5 C -0.078 4.078 6 C 0.224 3.776 7 N -0.456 5.456 8 C 0.023 3.977 9 C 0.603 3.397 10 O -0.550 6.550 11 N -0.590 5.590 12 C 0.103 3.897 13 C -0.124 4.124 14 C 0.218 3.782 15 O -0.563 6.563 16 C -0.551 4.551 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.889 5.889 20 Si 0.945 3.055 21 H -0.291 1.291 22 H -0.325 1.325 23 H -0.266 1.266 24 C 0.093 3.907 25 C -0.025 4.025 26 N -0.362 5.362 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.150 0.850 31 H 0.143 0.857 32 H 0.153 0.847 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.372 0.628 38 H 0.266 0.734 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.725 25.175 3.795 27.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.015 4.015 3 C -0.166 4.166 4 C -0.125 4.125 5 C -0.098 4.098 6 C -0.021 4.021 7 N -0.177 5.177 8 C -0.110 4.110 9 C 0.390 3.610 10 O -0.429 6.429 11 N -0.320 5.320 12 C -0.019 4.019 13 C -0.163 4.163 14 C 0.178 3.822 15 O -0.371 6.371 16 C -0.589 4.589 17 H 0.098 0.902 18 C -0.130 4.130 19 N -0.524 5.524 20 Si 0.780 3.220 21 H -0.218 1.218 22 H -0.256 1.256 23 H -0.192 1.192 24 C -0.029 4.029 25 C -0.159 4.159 26 N -0.035 5.035 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.167 0.833 31 H 0.161 0.839 32 H 0.171 0.829 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.220 0.780 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -10.117 24.886 3.594 27.103 hybrid contribution -0.451 -0.037 0.696 0.830 sum -10.567 24.848 4.290 27.341 Atomic orbital electron populations 1.20957 0.87831 1.04728 1.04057 1.20336 0.95252 0.83697 1.02223 1.20620 0.94809 0.96443 1.04711 1.21019 0.93644 0.98403 0.99434 1.20344 1.00888 0.87536 1.01042 1.21127 0.79928 0.94745 1.06332 1.71052 1.28318 0.97726 1.20585 1.20678 0.88968 0.94499 1.06866 1.16518 0.83011 0.83828 0.77672 1.90771 1.31639 1.67722 1.52798 1.48360 1.05756 1.08546 1.69354 1.22607 0.81020 0.96997 1.01316 1.23165 0.99027 0.93537 1.00544 1.20140 0.86780 0.94362 0.80944 1.86137 1.66694 1.53386 1.30882 1.21193 1.07257 1.12384 1.18042 0.90161 1.25101 0.98298 0.93733 0.95881 1.69967 1.26256 1.15298 1.40897 0.85796 0.77132 0.79534 0.79582 1.21828 1.25616 1.19184 1.22937 1.00170 0.78095 1.01729 1.22491 1.01181 0.80141 1.12128 1.42749 1.08929 1.05544 1.46266 0.89603 0.89099 0.90427 0.83259 0.83897 0.82888 0.89243 0.91885 0.89882 0.89921 0.78033 0.92427 0.92083 0.90580 0.78958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.84 36.01 0.35 -0.24 16 2 C 0.09 0.72 6.78 -81.64 -0.55 0.16 16 3 C -0.15 -0.91 9.58 -39.90 -0.38 -1.30 16 4 C -0.10 -0.68 10.06 -39.54 -0.40 -1.08 16 5 C -0.08 -0.74 10.11 -39.30 -0.40 -1.14 16 6 C 0.22 2.97 7.79 -156.04 -1.22 1.75 16 7 N -0.46 -7.38 8.38 -9.35 -0.08 -7.45 16 8 C 0.02 0.39 6.78 -83.45 -0.57 -0.18 16 9 C 0.60 11.96 7.85 -12.44 -0.10 11.87 16 10 O -0.55 -11.94 17.20 5.29 0.09 -11.85 16 11 N -0.59 -11.98 3.33 -171.72 -0.57 -12.55 16 12 C 0.10 1.97 6.12 -2.53 -0.02 1.95 16 13 C -0.12 -2.63 5.88 -24.58 -0.14 -2.78 16 14 C 0.22 5.00 0.68 -89.93 -0.06 4.94 16 15 O -0.56 -12.52 8.74 -35.23 -0.31 -12.83 16 16 C -0.55 -14.94 8.82 -34.44 -0.30 -15.24 16 17 H 0.08 2.37 7.81 -52.48 -0.41 1.96 16 18 C 0.07 2.10 5.46 -17.82 -0.10 2.00 16 19 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 20 Si 0.94 23.43 24.82 -169.99 -4.22 19.21 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.32 -8.26 7.11 56.52 0.40 -7.86 16 23 H -0.27 -6.43 5.19 56.52 0.29 -6.13 16 24 C 0.09 2.00 6.22 -3.06 -0.02 1.98 16 25 C -0.02 -0.33 10.78 -16.21 -0.17 -0.51 16 26 N -0.36 -4.30 2.93 -58.17 -0.17 -4.47 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.25 8.07 -51.93 -0.42 -0.17 16 29 H 0.08 0.42 7.46 -51.93 -0.39 0.04 16 30 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 31 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.09 1.62 6.14 -51.93 -0.32 1.30 16 34 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 35 H 0.08 1.76 8.04 -51.93 -0.42 1.34 16 36 H 0.08 1.77 6.24 -51.93 -0.32 1.44 16 37 H 0.37 7.34 8.97 45.56 0.41 7.75 16 38 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.06 1.27 8.04 -51.93 -0.42 0.86 16 40 H 0.08 1.73 7.66 -51.93 -0.40 1.33 16 41 H 0.19 2.17 7.77 -52.49 -0.41 1.76 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -34.85 336.48 -7.93 -42.78 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -4.45 Total: 5.76 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -4.07 Total: 2.20 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.05 Total: -50.35 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.22 Total: -24.67 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.22 Total: 19.21 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.85 -7.93 -42.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647244819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.164 kcal (2) G-P(sol) polarization free energy of solvation -34.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds