Wall clock time and date at job start Tue Mar 31 2020 11:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34846 * 119.68586 * 2 1 4 4 C 1.40573 * 120.34647 * 179.73019 * 3 2 1 5 5 C 1.35895 * 119.72601 * 0.49835 * 4 3 2 6 6 C 1.41189 * 119.34877 * 359.50968 * 5 4 3 7 7 N 1.32234 * 132.04683 * 180.25374 * 6 5 4 8 8 C 1.34578 * 109.02235 * 180.02562 * 7 6 5 9 9 C 1.47591 * 125.91814 * 180.02562 * 8 7 6 10 10 O 1.21588 * 120.00218 * 179.97438 * 9 8 7 11 11 N 1.34781 * 119.99899 * 359.97232 * 9 8 7 12 12 C 1.47427 * 125.64952 * 0.02562 * 11 9 8 13 13 C 1.54907 * 104.83632 * 204.09751 * 12 11 9 14 14 C 1.55163 * 101.57804 * 322.99186 * 13 12 11 15 15 O 1.42896 * 110.71944 * 277.13542 * 14 13 12 16 16 C 1.50700 * 110.71695 * 154.04386 * 14 13 12 17 17 H 1.08008 * 119.99685 * 268.65756 * 16 14 13 18 18 C 1.37880 * 120.00152 * 88.65744 * 16 14 13 19 19 N 1.31510 * 119.99846 * 173.91444 * 18 16 14 20 20 Si 1.86793 * 119.99794 * 353.91671 * 18 16 14 21 21 H 1.48501 * 109.47325 * 86.07108 * 20 18 16 22 22 H 1.48501 * 109.47023 * 206.06887 * 20 18 16 23 23 H 1.48503 * 109.47300 * 326.06825 * 20 18 16 24 24 C 1.47020 * 125.65008 * 179.72163 * 11 9 8 25 25 C 1.36579 * 108.16541 * 359.97438 * 8 7 6 26 26 N 1.36197 * 107.09350 * 0.02562 * 25 8 7 27 27 H 1.08994 * 109.47187 * 270.02402 * 1 2 3 28 28 H 1.09003 * 109.46743 * 30.02084 * 1 2 3 29 29 H 1.09002 * 109.46969 * 150.01915 * 1 2 3 30 30 H 1.07999 * 119.82506 * 359.97438 * 3 2 1 31 31 H 1.07992 * 120.13420 * 180.27995 * 4 3 2 32 32 H 1.07997 * 120.32345 * 179.77733 * 5 4 3 33 33 H 1.08997 * 110.36657 * 322.94187 * 12 11 9 34 34 H 1.09007 * 110.36106 * 85.14631 * 12 11 9 35 35 H 1.08996 * 111.00360 * 81.06292 * 13 12 11 36 36 H 1.09000 * 111.00391 * 204.92331 * 13 12 11 37 37 H 0.96701 * 113.99495 * 174.40990 * 15 14 13 38 38 H 0.97003 * 120.00043 * 179.97438 * 19 18 16 39 39 H 1.09001 * 109.88058 * 298.38902 * 24 11 9 40 40 H 1.08998 * 109.88340 * 59.55189 * 24 11 9 41 41 H 1.07995 * 126.44958 * 180.02562 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1748 1.1715 0.0000 4 6 3.5804 1.1877 0.0057 5 6 4.2679 0.0154 0.0010 6 6 3.5563 -1.2040 0.0009 7 7 3.9581 -2.4638 0.0013 8 6 2.8793 -3.2684 0.0005 9 6 2.8998 -4.7441 0.0011 10 8 1.8554 -5.3666 0.0007 11 7 4.0763 -5.4018 0.0021 12 6 5.4108 -4.7753 0.0033 13 6 6.3512 -5.8441 -0.6073 14 6 5.7568 -7.1526 -0.0223 15 8 6.2493 -7.3853 1.2988 16 6 6.0643 -8.3249 -0.9180 17 1 5.3696 -8.6075 -1.6951 18 6 7.2326 -9.0366 -0.7453 19 7 7.4461 -10.1295 -1.4449 20 14 8.5118 -8.4484 0.4822 21 1 8.1842 -8.9777 1.8305 22 1 9.8529 -8.9361 0.0715 23 1 8.5152 -6.9639 0.5206 24 6 4.2413 -6.8626 0.0087 25 6 1.7622 -2.4826 0.0000 26 7 2.1837 -1.1875 0.0001 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6268 2.1021 -0.0004 31 1 4.1118 2.1279 0.0103 32 1 5.3478 0.0167 0.0017 33 1 5.4082 -3.8760 -0.6125 34 1 5.7165 -4.5358 1.0218 35 1 6.2922 -5.8406 -1.6956 36 1 7.3782 -5.6979 -0.2727 37 1 5.8440 -8.1433 1.7417 38 1 8.2682 -10.6301 -1.3238 39 1 3.8002 -7.2815 0.9132 40 1 3.7653 -7.2934 -0.8721 41 1 0.7376 -2.8240 -0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647244819.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:43 Heat of formation + Delta-G solvation = -5.267998 kcal Electronic energy + Delta-G solvation = -26008.643116 eV Core-core repulsion = 22275.266094 eV Total energy + Delta-G solvation = -3733.377023 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.97921 -41.11016 -39.31553 -38.34738 -36.42479 -35.17804 -34.47073 -32.63759 -31.74552 -30.51317 -29.97601 -28.18936 -27.57040 -25.22077 -23.84643 -23.66183 -22.35959 -21.52945 -20.54161 -19.57688 -19.03751 -17.90878 -17.71379 -17.35662 -17.11696 -16.63394 -16.54411 -16.47735 -15.84811 -15.29079 -15.25359 -14.85406 -14.82154 -14.57020 -14.25090 -14.04716 -13.90960 -13.58726 -13.28415 -13.25209 -13.22794 -12.78870 -12.46575 -12.38543 -12.33760 -12.22692 -12.05523 -11.89059 -11.56523 -11.21751 -11.03417 -10.64618 -10.41841 -10.01717 -9.64347 -8.86825 -8.35294 -6.49903 -0.37174 0.18725 0.93835 1.35956 1.50984 1.53297 1.73456 1.96400 2.22755 2.45105 2.53919 2.93589 2.98600 3.27281 3.48042 3.62445 3.73429 3.86250 3.97165 4.09986 4.19406 4.22336 4.32779 4.39826 4.55705 4.61550 4.64616 4.69426 4.73085 4.78326 4.96746 5.05520 5.12772 5.13817 5.18873 5.25122 5.31678 5.42249 5.50421 5.57963 5.96351 6.03628 6.41606 6.55336 6.56670 6.92650 6.99792 7.27974 8.77937 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027548 B = 0.003228 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.164599 B = 8671.412232 C = 9360.687314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.066 3.934 3 C -0.133 4.133 4 C -0.071 4.071 5 C -0.112 4.112 6 C 0.217 3.783 7 N -0.494 5.494 8 C -0.015 4.015 9 C 0.602 3.398 10 O -0.579 6.579 11 N -0.597 5.597 12 C 0.121 3.879 13 C -0.122 4.122 14 C 0.221 3.779 15 O -0.561 6.561 16 C -0.551 4.551 17 H 0.040 0.960 18 C 0.028 3.972 19 N -0.936 5.936 20 Si 1.005 2.995 21 H -0.279 1.279 22 H -0.332 1.332 23 H -0.253 1.253 24 C 0.100 3.900 25 C -0.017 4.017 26 N -0.363 5.363 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.068 0.932 30 H 0.194 0.806 31 H 0.184 0.816 32 H 0.163 0.837 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.383 0.617 38 H 0.269 0.731 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.210 30.036 5.119 32.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.035 4.035 3 C -0.153 4.153 4 C -0.094 4.094 5 C -0.132 4.132 6 C -0.029 4.029 7 N -0.216 5.216 8 C -0.147 4.147 9 C 0.391 3.609 10 O -0.460 6.460 11 N -0.328 5.328 12 C -0.001 4.001 13 C -0.160 4.160 14 C 0.181 3.819 15 O -0.370 6.370 16 C -0.589 4.589 17 H 0.058 0.942 18 C -0.172 4.172 19 N -0.573 5.573 20 Si 0.837 3.163 21 H -0.206 1.206 22 H -0.264 1.264 23 H -0.178 1.178 24 C -0.023 4.023 25 C -0.153 4.153 26 N -0.035 5.035 27 H 0.113 0.887 28 H 0.138 0.862 29 H 0.087 0.913 30 H 0.211 0.789 31 H 0.201 0.799 32 H 0.181 0.819 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.233 0.767 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -10.626 29.775 4.928 31.996 hybrid contribution -0.442 -1.315 0.232 1.406 sum -11.068 28.460 5.160 30.970 Atomic orbital electron populations 1.21080 0.85624 1.05764 1.04955 1.21145 0.96992 0.82905 1.02498 1.21280 0.94936 0.97290 1.01750 1.21601 0.94075 0.98845 0.94906 1.20656 1.01699 0.87114 1.03756 1.21654 0.80933 0.94877 1.05392 1.70859 1.28666 0.99096 1.23008 1.20255 0.90803 0.92924 1.10742 1.16984 0.82206 0.85328 0.76418 1.90727 1.32384 1.68867 1.54054 1.48388 1.06589 1.07734 1.70040 1.22475 0.79743 0.96396 1.01491 1.23089 0.99612 0.93099 1.00239 1.19933 0.87831 0.93548 0.80632 1.86092 1.66794 1.54045 1.30041 1.21362 1.06272 1.13612 1.17615 0.94162 1.25871 1.00171 0.93595 0.97605 1.70081 1.27141 1.16944 1.43184 0.84821 0.74184 0.79662 0.77656 1.20593 1.26432 1.17820 1.22641 0.99083 0.79545 1.01012 1.22574 1.00924 0.80816 1.11029 1.42891 1.08775 1.05962 1.45854 0.88680 0.86168 0.91317 0.78877 0.79858 0.81915 0.88098 0.91481 0.90529 0.89520 0.76750 0.92250 0.91540 0.92760 0.77514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 9.84 71.24 0.70 -0.05 16 2 C 0.07 0.85 6.78 41.02 0.28 1.13 16 3 C -0.13 -0.96 9.58 22.06 0.21 -0.75 16 4 C -0.07 -0.59 10.06 22.30 0.22 -0.37 16 5 C -0.11 -1.84 10.11 22.45 0.23 -1.61 16 6 C 0.22 5.51 7.79 134.20 1.05 6.55 16 7 N -0.49 -16.05 8.38 -183.49 -1.54 -17.59 16 8 C -0.02 -0.53 6.78 40.80 0.28 -0.26 16 9 C 0.60 24.67 7.85 86.71 0.68 25.35 16 10 O -0.58 -26.11 17.20 -3.99 -0.07 -26.18 16 11 N -0.60 -24.86 3.33 -815.45 -2.71 -27.58 16 12 C 0.12 4.62 6.12 86.85 0.53 5.15 16 13 C -0.12 -5.17 5.88 31.99 0.19 -4.98 16 14 C 0.22 10.27 0.68 -10.35 -0.01 10.26 16 15 O -0.56 -24.34 8.74 -148.98 -1.30 -25.64 16 16 C -0.55 -30.90 8.82 25.60 0.23 -30.67 16 17 H 0.04 2.53 7.81 -2.91 -0.02 2.51 16 18 C 0.03 1.58 5.46 84.66 0.46 2.04 16 19 N -0.94 -57.85 13.96 21.45 0.30 -57.55 16 20 Si 1.00 48.22 24.82 68.60 1.70 49.93 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.33 -16.33 7.11 99.48 0.71 -15.62 16 23 H -0.25 -11.53 5.19 99.48 0.52 -11.02 16 24 C 0.10 4.47 6.22 86.73 0.54 5.01 16 25 C -0.02 -0.46 10.78 83.63 0.90 0.44 16 26 N -0.36 -8.03 2.93 -337.96 -0.99 -9.02 16 27 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.12 0.07 8.07 -2.39 -0.02 0.05 16 29 H 0.07 0.59 7.46 -2.39 -0.02 0.57 16 30 H 0.19 -0.26 8.06 -2.91 -0.02 -0.28 16 31 H 0.18 0.10 8.06 -2.91 -0.02 0.07 16 32 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.10 3.67 6.14 -2.39 -0.01 3.66 16 34 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 35 H 0.08 3.31 8.04 -2.39 -0.02 3.29 16 36 H 0.09 3.60 6.24 -2.39 -0.01 3.58 16 37 H 0.38 14.73 8.97 -74.06 -0.66 14.07 16 38 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.07 2.85 8.04 -2.39 -0.02 2.83 16 40 H 0.05 2.63 7.66 -2.39 -0.02 2.61 16 41 H 0.21 4.65 7.77 -2.91 -0.02 4.63 16 Total: -1.00 -79.65 336.48 2.10 -77.56 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.22 Total: 18.82 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 6.49 Total: 17.26 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -4.94 Total: -111.73 kcal Atomic # 8 Polarization: -50.45 SS G_CDS: -1.37 Total: -51.82 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.70 Total: 49.93 kcal Total: -79.65 2.10 -77.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647244819.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.288 kcal (2) G-P(sol) polarization free energy of solvation -79.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds