Wall clock time and date at job start Tue Mar 31 2020 11:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36325 * 119.75261 * 2 1 4 4 C 1.47526 * 120.16389 * 359.97438 * 3 2 1 5 5 O 1.21606 * 120.00091 * 309.88121 * 4 3 2 6 6 N 1.34777 * 119.99892 * 129.88024 * 4 3 2 7 7 C 1.47419 * 125.65081 * 354.73221 * 6 4 3 8 8 C 1.54911 * 104.83362 * 155.90419 * 7 6 4 9 9 C 1.55158 * 101.57824 * 37.01076 * 8 7 6 10 10 O 1.42897 * 110.72615 * 82.86232 * 9 8 7 11 11 C 1.50708 * 110.71526 * 205.95770 * 9 8 7 12 12 H 1.07995 * 120.00084 * 357.55496 * 11 9 8 13 13 C 1.37878 * 119.99578 * 177.55874 * 11 9 8 14 14 N 1.31513 * 120.00367 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 119.99629 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47399 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47236 * 119.99912 * 15 13 11 18 18 H 1.48504 * 109.47168 * 239.99717 * 15 13 11 19 19 C 1.47029 * 125.64549 * 174.76990 * 6 4 3 20 20 C 1.46500 * 119.66786 * 179.70162 * 3 2 1 21 21 C 1.35524 * 119.04722 * 0.27428 * 20 3 2 22 22 C 1.41223 * 119.42978 * 0.02562 * 21 20 3 23 23 C 1.37916 * 132.97611 * 179.97438 * 22 21 20 24 24 N 1.33445 * 107.66218 * 179.97438 * 23 22 21 25 25 C 1.30752 * 109.93904 * 0.02562 * 24 23 22 26 26 N 1.35926 * 109.20584 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47130 * 94.23408 * 1 2 3 28 28 H 1.08996 * 109.47429 * 214.24338 * 1 2 3 29 29 H 1.09005 * 109.46809 * 334.24103 * 1 2 3 30 30 H 1.08998 * 110.36719 * 37.06360 * 7 6 4 31 31 H 1.09003 * 110.36658 * 274.74407 * 7 6 4 32 32 H 1.08997 * 111.00539 * 278.93201 * 8 7 6 33 33 H 1.09002 * 111.03847 * 155.09258 * 8 7 6 34 34 H 0.96694 * 114.00222 * 179.97438 * 10 9 8 35 35 H 0.97003 * 120.00059 * 180.02562 * 14 13 11 36 36 H 1.08995 * 109.88181 * 61.60763 * 19 6 4 37 37 H 1.08997 * 109.88165 * 300.44439 * 19 6 4 38 38 H 1.08000 * 120.47371 * 180.25372 * 20 3 2 39 39 H 1.08010 * 120.28644 * 180.02562 * 21 20 3 40 40 H 1.08006 * 126.16318 * 0.02562 * 23 22 21 41 41 H 1.07997 * 125.39697 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1835 1.1835 0.0000 4 6 1.4440 2.4601 -0.0006 5 8 0.5552 2.6476 -0.8091 6 7 1.7535 3.4185 0.8950 7 6 2.7262 3.2851 1.9947 8 6 3.1715 4.7353 2.3083 9 6 1.8466 5.5179 2.1092 10 8 1.0361 5.4473 3.2840 11 6 2.1250 6.9526 1.7413 12 1 3.1431 7.3091 1.6901 13 6 1.0798 7.8099 1.4702 14 7 -0.1601 7.3759 1.5332 15 14 1.4248 9.5884 1.0149 16 1 2.8909 9.8242 1.0157 17 1 0.8787 9.8681 -0.3375 18 1 0.7789 10.4871 2.0051 19 6 1.1762 4.7700 0.9376 20 6 3.6485 1.1814 0.0066 21 6 4.3048 -0.0044 0.0070 22 6 3.5646 -1.2071 0.0004 23 6 3.9313 -2.5366 -0.0014 24 7 2.8131 -3.2650 -0.0079 25 6 1.7687 -2.4784 -0.0107 26 7 2.1836 -1.1840 -0.0067 27 1 -0.3633 -0.0759 -1.0249 28 1 -0.3634 -0.8495 0.5782 29 1 -0.3633 0.9256 0.4466 30 1 3.5797 2.6868 1.6757 31 1 2.2526 2.8365 2.8679 32 1 3.9332 5.0710 1.6046 33 1 3.5260 4.8223 3.3354 34 1 0.1963 5.9210 3.2115 35 1 -0.8954 7.9791 1.3421 36 1 0.1007 4.7087 1.1039 37 1 1.3795 5.2896 0.0013 38 1 4.1976 2.1114 0.0108 39 1 5.3846 -0.0293 0.0122 40 1 4.9413 -2.9192 0.0025 41 1 0.7394 -2.8053 -0.0163 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647248406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:58 Heat of formation + Delta-G solvation = 9.129447 kcal Electronic energy + Delta-G solvation = -26403.502243 eV Core-core repulsion = 22670.749541 eV Total energy + Delta-G solvation = -3732.752702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.89085 -39.82445 -37.76144 -36.75434 -34.60305 -34.00191 -32.27831 -31.71621 -30.21423 -29.05586 -28.00684 -27.45463 -25.41756 -23.78821 -22.86635 -22.41399 -21.24773 -19.80318 -19.30471 -18.11609 -17.25401 -16.96590 -16.30877 -16.09515 -15.76904 -15.26566 -14.98907 -14.61101 -14.43459 -14.13977 -13.70566 -13.61153 -13.42728 -13.21033 -13.04032 -12.94987 -12.45733 -12.12082 -11.77330 -11.70349 -11.61484 -11.51926 -11.14697 -10.92287 -10.81450 -10.66865 -10.54872 -10.46494 -10.25630 -9.71514 -9.42206 -9.25546 -8.76277 -8.41851 -8.05703 -7.65847 -6.37601 -4.46641 0.61592 0.92541 2.30006 2.71372 2.98914 3.14395 3.23867 3.26574 3.28347 3.50820 4.14624 4.20039 4.40893 4.49133 4.56981 4.66172 4.80182 4.90579 5.15745 5.28075 5.28893 5.31804 5.36503 5.56521 5.61817 5.72152 5.80913 5.87607 5.93903 5.97170 6.07479 6.33640 6.39097 6.42359 6.64629 6.72674 6.80333 6.96832 7.15259 7.26025 7.64690 7.68158 7.88877 8.00175 8.45122 8.57971 9.21847 9.31494 10.70023 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.003311 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.415934 B = 8454.140306 C = 8792.821766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.137 3.863 3 C -0.138 4.138 4 C 0.573 3.427 5 O -0.539 6.539 6 N -0.598 5.598 7 C 0.095 3.905 8 C -0.118 4.118 9 C 0.249 3.751 10 O -0.585 6.585 11 C -0.538 4.538 12 H 0.068 0.932 13 C 0.070 3.930 14 N -0.895 5.895 15 Si 0.904 3.096 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.103 3.897 20 C -0.090 4.090 21 C -0.089 4.089 22 C 0.011 3.989 23 C -0.026 4.026 24 N -0.454 5.454 25 C 0.146 3.854 26 N -0.370 5.370 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.385 0.615 35 H 0.271 0.729 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.181 0.819 41 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.692 -13.711 -1.230 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.033 3.967 3 C -0.144 4.144 4 C 0.360 3.640 5 O -0.418 6.418 6 N -0.330 5.330 7 C -0.028 4.028 8 C -0.156 4.156 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.577 4.577 12 H 0.086 0.914 13 C -0.133 4.133 14 N -0.534 5.534 15 Si 0.731 3.269 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.018 4.018 20 C -0.111 4.111 21 C -0.108 4.108 22 C -0.098 4.098 23 C -0.179 4.179 24 N -0.167 5.167 25 C -0.129 4.129 26 N -0.042 5.042 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.236 0.764 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.198 0.802 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 5.331 -14.861 -1.510 15.860 hybrid contribution -0.342 2.167 -0.516 2.253 sum 4.990 -12.694 -2.026 13.789 Atomic orbital electron populations 1.21013 0.86920 1.04902 1.04533 1.20150 0.95070 0.82834 0.98608 1.20395 0.94030 0.92544 1.07450 1.17285 0.83032 0.82327 0.81393 1.90811 1.31310 1.80203 1.39495 1.48710 1.41468 1.14495 1.28309 1.22521 0.91532 0.99215 0.89489 1.22771 0.98603 0.92356 1.01886 1.19487 0.85756 0.92508 0.81439 1.86088 1.35995 1.77937 1.39479 1.21549 0.93817 0.94235 1.48065 0.91366 1.25085 0.94947 0.99549 0.93725 1.69641 0.98552 1.36439 1.48724 0.86337 0.78672 0.83664 0.78189 1.19548 1.20731 1.20694 1.23110 0.98656 0.78080 1.02000 1.22147 0.91447 0.98830 0.98653 1.20385 1.00120 0.88833 1.01486 1.19754 0.82387 0.97111 1.10509 1.22523 0.98022 0.87006 1.10301 1.69943 0.97907 1.33058 1.15833 1.25050 1.00529 0.76483 1.10873 1.42887 1.07538 1.06504 1.47299 0.88868 0.90687 0.88477 0.91400 0.91577 0.90383 0.90340 0.76354 0.91920 0.91351 0.91273 0.83596 0.83128 0.80227 0.77276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 8.90 36.01 0.32 -1.07 16 2 C 0.14 1.87 6.82 -81.26 -0.55 1.31 16 3 C -0.14 -2.06 5.35 -103.47 -0.55 -2.62 16 4 C 0.57 10.58 6.34 -12.47 -0.08 10.50 16 5 O -0.54 -11.55 15.90 5.27 0.08 -11.46 16 6 N -0.60 -11.40 3.33 -171.75 -0.57 -11.97 16 7 C 0.10 1.56 6.66 -2.53 -0.02 1.55 16 8 C -0.12 -2.18 6.22 -24.58 -0.15 -2.33 16 9 C 0.25 5.67 0.86 -89.94 -0.08 5.59 16 10 O -0.59 -14.07 13.09 -35.23 -0.46 -14.54 16 11 C -0.54 -13.40 8.12 -34.44 -0.28 -13.68 16 12 H 0.07 1.67 7.77 -52.49 -0.41 1.26 16 13 C 0.07 1.76 5.26 -17.82 -0.09 1.66 16 14 N -0.89 -22.89 10.97 55.43 0.61 -22.28 16 15 Si 0.90 19.74 29.54 -169.99 -5.02 14.72 16 16 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 C 0.10 2.33 5.40 -3.06 -0.02 2.31 16 20 C -0.09 -1.11 8.19 -37.22 -0.30 -1.42 16 21 C -0.09 -0.95 10.09 -39.42 -0.40 -1.35 16 22 C 0.01 0.14 6.78 -84.01 -0.57 -0.43 16 23 C -0.03 -0.30 12.00 -16.97 -0.20 -0.50 16 24 N -0.45 -5.88 11.19 -13.78 -0.15 -6.04 16 25 C 0.15 1.69 12.13 -89.35 -1.08 0.61 16 26 N -0.37 -4.74 2.94 -57.74 -0.17 -4.91 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.07 0.68 7.65 -51.93 -0.40 0.28 16 29 H 0.10 1.37 6.39 -51.93 -0.33 1.04 16 30 H 0.07 0.91 5.00 -51.93 -0.26 0.65 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.39 9.57 7.17 45.56 0.33 9.90 16 35 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.07 1.70 8.01 -51.93 -0.42 1.29 16 37 H 0.07 1.71 7.82 -51.93 -0.41 1.30 16 38 H 0.15 1.62 7.08 -52.49 -0.37 1.25 16 39 H 0.15 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.18 1.55 8.06 -52.48 -0.42 1.12 16 41 H 0.21 1.68 7.85 -52.49 -0.41 1.27 16 LS Contribution 339.01 15.07 5.11 5.11 Total: -1.00 -29.69 339.01 -8.98 -38.67 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -4.34 Total: 12.58 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -4.06 Total: 0.13 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: -0.29 Total: -45.20 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.38 Total: -26.00 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.69 -8.98 -38.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647248406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.799 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds