Wall clock time and date at job start Tue Mar 31 2020 11:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36325 * 119.75261 * 2 1 4 4 C 1.47526 * 120.16389 * 359.97438 * 3 2 1 5 5 O 1.21606 * 120.00091 * 309.88121 * 4 3 2 6 6 N 1.34777 * 119.99892 * 129.88024 * 4 3 2 7 7 C 1.47419 * 125.65081 * 354.73221 * 6 4 3 8 8 C 1.54911 * 104.83362 * 155.90419 * 7 6 4 9 9 C 1.55158 * 101.57824 * 37.01076 * 8 7 6 10 10 O 1.42897 * 110.72615 * 82.86232 * 9 8 7 11 11 C 1.50708 * 110.71526 * 205.95770 * 9 8 7 12 12 H 1.07995 * 120.00084 * 357.55496 * 11 9 8 13 13 C 1.37878 * 119.99578 * 177.55874 * 11 9 8 14 14 N 1.31513 * 120.00367 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 119.99629 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47399 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47236 * 119.99912 * 15 13 11 18 18 H 1.48504 * 109.47168 * 239.99717 * 15 13 11 19 19 C 1.47029 * 125.64549 * 174.76990 * 6 4 3 20 20 C 1.46500 * 119.66786 * 179.70162 * 3 2 1 21 21 C 1.35524 * 119.04722 * 0.27428 * 20 3 2 22 22 C 1.41223 * 119.42978 * 0.02562 * 21 20 3 23 23 C 1.37916 * 132.97611 * 179.97438 * 22 21 20 24 24 N 1.33445 * 107.66218 * 179.97438 * 23 22 21 25 25 C 1.30752 * 109.93904 * 0.02562 * 24 23 22 26 26 N 1.35926 * 109.20584 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47130 * 94.23408 * 1 2 3 28 28 H 1.08996 * 109.47429 * 214.24338 * 1 2 3 29 29 H 1.09005 * 109.46809 * 334.24103 * 1 2 3 30 30 H 1.08998 * 110.36719 * 37.06360 * 7 6 4 31 31 H 1.09003 * 110.36658 * 274.74407 * 7 6 4 32 32 H 1.08997 * 111.00539 * 278.93201 * 8 7 6 33 33 H 1.09002 * 111.03847 * 155.09258 * 8 7 6 34 34 H 0.96694 * 114.00222 * 179.97438 * 10 9 8 35 35 H 0.97003 * 120.00059 * 180.02562 * 14 13 11 36 36 H 1.08995 * 109.88181 * 61.60763 * 19 6 4 37 37 H 1.08997 * 109.88165 * 300.44439 * 19 6 4 38 38 H 1.08000 * 120.47371 * 180.25372 * 20 3 2 39 39 H 1.08010 * 120.28644 * 180.02562 * 21 20 3 40 40 H 1.08006 * 126.16318 * 0.02562 * 23 22 21 41 41 H 1.07997 * 125.39697 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1835 1.1835 0.0000 4 6 1.4440 2.4601 -0.0006 5 8 0.5552 2.6476 -0.8091 6 7 1.7535 3.4185 0.8950 7 6 2.7262 3.2851 1.9947 8 6 3.1715 4.7353 2.3083 9 6 1.8466 5.5179 2.1092 10 8 1.0361 5.4473 3.2840 11 6 2.1250 6.9526 1.7413 12 1 3.1431 7.3091 1.6901 13 6 1.0798 7.8099 1.4702 14 7 -0.1601 7.3759 1.5332 15 14 1.4248 9.5884 1.0149 16 1 2.8909 9.8242 1.0157 17 1 0.8787 9.8681 -0.3375 18 1 0.7789 10.4871 2.0051 19 6 1.1762 4.7700 0.9376 20 6 3.6485 1.1814 0.0066 21 6 4.3048 -0.0044 0.0070 22 6 3.5646 -1.2071 0.0004 23 6 3.9313 -2.5366 -0.0014 24 7 2.8131 -3.2650 -0.0079 25 6 1.7687 -2.4784 -0.0107 26 7 2.1836 -1.1840 -0.0067 27 1 -0.3633 -0.0759 -1.0249 28 1 -0.3634 -0.8495 0.5782 29 1 -0.3633 0.9256 0.4466 30 1 3.5797 2.6868 1.6757 31 1 2.2526 2.8365 2.8679 32 1 3.9332 5.0710 1.6046 33 1 3.5260 4.8223 3.3354 34 1 0.1963 5.9210 3.2115 35 1 -0.8954 7.9791 1.3421 36 1 0.1007 4.7087 1.1039 37 1 1.3795 5.2896 0.0013 38 1 4.1976 2.1114 0.0108 39 1 5.3846 -0.0293 0.0122 40 1 4.9413 -2.9192 0.0025 41 1 0.7394 -2.8053 -0.0163 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647248406.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:57 Heat of formation + Delta-G solvation = -9.202137 kcal Electronic energy + Delta-G solvation = -26404.297160 eV Core-core repulsion = 22670.749541 eV Total energy + Delta-G solvation = -3733.547620 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.80740 -41.27640 -39.26037 -37.95114 -36.22104 -35.00868 -34.20781 -32.79555 -31.73309 -30.10041 -29.51529 -28.55872 -27.07874 -25.11323 -23.91879 -23.60791 -22.13980 -21.49417 -20.66593 -19.30431 -18.97588 -18.23340 -17.41231 -17.31335 -17.00000 -16.84251 -16.35478 -16.15754 -15.79162 -15.10529 -14.90941 -14.82490 -14.77280 -14.54293 -14.35487 -14.30050 -13.71350 -13.51651 -13.44485 -13.19174 -12.89787 -12.70703 -12.61087 -12.49725 -12.30064 -12.25447 -12.07866 -11.65591 -11.39126 -11.21331 -11.15828 -10.66220 -10.34869 -10.25323 -9.64439 -8.55549 -8.28167 -6.43895 -0.38516 0.01509 1.27013 1.40088 1.44217 1.52975 1.54165 1.97437 2.07519 2.34541 2.37818 2.98733 3.17888 3.36926 3.57586 3.67830 3.77272 3.78717 3.88726 4.07043 4.12199 4.27684 4.33997 4.40078 4.44135 4.55112 4.58954 4.67831 4.69170 4.92296 4.95398 4.99430 5.08935 5.11664 5.21063 5.35947 5.46109 5.47995 5.58071 5.73646 6.02425 6.05018 6.50572 6.64600 6.79229 6.97550 7.27529 7.35240 8.77946 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.003311 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.415934 B = 8454.140306 C = 8792.821766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.140 3.860 3 C -0.156 4.156 4 C 0.575 3.425 5 O -0.579 6.579 6 N -0.602 5.602 7 C 0.102 3.898 8 C -0.112 4.112 9 C 0.233 3.767 10 O -0.589 6.589 11 C -0.555 4.555 12 H 0.070 0.930 13 C 0.026 3.974 14 N -0.917 5.917 15 Si 0.962 3.038 16 H -0.264 1.264 17 H -0.285 1.285 18 H -0.279 1.279 19 C 0.121 3.879 20 C -0.110 4.110 21 C -0.065 4.065 22 C -0.014 4.014 23 C -0.020 4.020 24 N -0.479 5.479 25 C 0.149 3.851 26 N -0.378 5.378 27 H 0.096 0.904 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.377 0.623 35 H 0.270 0.730 36 H 0.033 0.967 37 H 0.039 0.961 38 H 0.158 0.842 39 H 0.190 0.810 40 H 0.209 0.791 41 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.005 -15.461 -1.042 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.036 3.964 3 C -0.162 4.162 4 C 0.364 3.636 5 O -0.461 6.461 6 N -0.333 5.333 7 C -0.019 4.019 8 C -0.150 4.150 9 C 0.192 3.808 10 O -0.398 6.398 11 C -0.593 4.593 12 H 0.088 0.912 13 C -0.175 4.175 14 N -0.556 5.556 15 Si 0.788 3.212 16 H -0.188 1.188 17 H -0.211 1.211 18 H -0.205 1.205 19 C -0.002 4.002 20 C -0.131 4.131 21 C -0.084 4.084 22 C -0.121 4.121 23 C -0.172 4.172 24 N -0.193 5.193 25 C -0.125 4.125 26 N -0.051 5.051 27 H 0.114 0.886 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.227 0.773 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.176 0.824 39 H 0.207 0.793 40 H 0.225 0.775 41 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 7.689 -16.636 -1.303 18.373 hybrid contribution -1.085 2.557 -0.599 2.842 sum 6.605 -14.079 -1.902 15.667 Atomic orbital electron populations 1.21003 0.86388 1.04786 1.05014 1.20173 0.95537 0.82985 0.97750 1.20125 0.95345 0.90797 1.09962 1.17831 0.82413 0.83193 0.80177 1.90775 1.33193 1.81183 1.40916 1.48698 1.41960 1.13310 1.29349 1.22616 0.92091 0.98518 0.88700 1.22776 0.96437 0.92696 1.03051 1.19723 0.87581 0.92486 0.80977 1.86080 1.35732 1.77775 1.40213 1.21881 0.93908 0.95523 1.48022 0.91210 1.25805 0.94870 1.03035 0.93796 1.69747 0.99137 1.37404 1.49326 0.85432 0.78732 0.79524 0.77512 1.18762 1.21060 1.20492 1.22583 0.96779 0.80216 1.00620 1.22195 0.89929 1.00145 1.00792 1.20787 1.01793 0.87403 0.98418 1.20195 0.82397 0.98030 1.11497 1.23083 0.98979 0.86697 1.08431 1.70007 0.98700 1.33652 1.16924 1.25755 1.01719 0.75956 1.09091 1.42983 1.07956 1.06370 1.47749 0.88577 0.87563 0.91228 0.87434 0.91571 0.89155 0.89146 0.77274 0.92033 0.94845 0.94246 0.82449 0.79271 0.77455 0.74427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 8.90 71.24 0.63 -2.05 16 2 C 0.14 3.63 6.82 41.41 0.28 3.91 16 3 C -0.16 -4.53 5.35 -19.12 -0.10 -4.63 16 4 C 0.57 21.66 6.34 86.69 0.55 22.21 16 5 O -0.58 -25.99 15.90 -4.05 -0.06 -26.05 16 6 N -0.60 -23.31 3.33 -815.55 -2.71 -26.03 16 7 C 0.10 3.22 6.66 86.86 0.58 3.80 16 8 C -0.11 -3.99 6.22 31.99 0.20 -3.79 16 9 C 0.23 10.79 0.86 -10.35 -0.01 10.78 16 10 O -0.59 -29.03 13.09 -148.98 -1.95 -30.98 16 11 C -0.56 -27.98 8.12 25.60 0.21 -27.77 16 12 H 0.07 3.41 7.77 -2.91 -0.02 3.39 16 13 C 0.03 1.31 5.26 84.65 0.45 1.75 16 14 N -0.92 -48.57 10.97 21.45 0.24 -48.33 16 15 Si 0.96 40.89 29.54 68.60 2.03 42.92 16 16 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 19 C 0.12 5.74 5.40 86.73 0.47 6.21 16 20 C -0.11 -2.45 8.19 23.80 0.19 -2.26 16 21 C -0.07 -1.16 10.09 22.38 0.23 -0.93 16 22 C -0.01 -0.29 6.78 38.81 0.26 -0.03 16 23 C -0.02 -0.39 12.00 84.37 1.01 0.62 16 24 N -0.48 -11.04 11.19 -197.50 -2.21 -13.25 16 25 C 0.15 3.07 12.13 179.91 2.18 5.25 16 26 N -0.38 -8.78 2.94 -336.60 -0.99 -9.77 16 27 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.11 1.73 7.65 -2.39 -0.02 1.71 16 29 H 0.07 2.03 6.39 -2.38 -0.02 2.02 16 30 H 0.11 2.56 5.00 -2.39 -0.01 2.55 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.09 2.98 8.04 -2.39 -0.02 2.96 16 33 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.38 19.57 7.17 -74.06 -0.53 19.04 16 35 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 36 H 0.03 1.78 8.01 -2.39 -0.02 1.76 16 37 H 0.04 2.06 7.82 -2.39 -0.02 2.04 16 38 H 0.16 3.04 7.08 -2.91 -0.02 3.02 16 39 H 0.19 1.79 8.06 -2.91 -0.02 1.76 16 40 H 0.21 2.70 8.06 -2.91 -0.02 2.68 16 41 H 0.24 3.07 7.85 -2.91 -0.02 3.04 16 Total: -1.00 -66.79 339.01 2.01 -64.78 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.55 Total: 33.63 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 7.13 Total: 13.08 kcal Atomic # 7 Polarization: -91.70 SS G_CDS: -5.68 Total: -97.38 kcal Atomic # 8 Polarization: -55.02 SS G_CDS: -2.01 Total: -57.03 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -66.79 2.01 -64.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647248406.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.579 kcal (2) G-P(sol) polarization free energy of solvation -66.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds