Wall clock time and date at job start Tue Mar 31 2020 11:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36321 * 119.75226 * 2 1 4 4 C 1.47526 * 120.16525 * 0.02562 * 3 2 1 5 5 O 1.21602 * 119.99944 * 321.62724 * 4 3 2 6 6 N 1.34769 * 119.99818 * 141.62802 * 4 3 2 7 7 C 1.47421 * 125.65068 * 355.02750 * 6 4 3 8 8 C 1.55388 * 104.87468 * 204.09763 * 7 6 4 9 9 C 1.55151 * 101.36639 * 323.01771 * 8 7 6 10 10 O 1.42908 * 110.71717 * 277.04382 * 9 8 7 11 11 C 1.50698 * 110.72165 * 153.94980 * 9 8 7 12 12 H 1.08003 * 120.00261 * 2.43430 * 11 9 8 13 13 C 1.37886 * 120.00107 * 182.43868 * 11 9 8 14 14 N 1.31514 * 119.99734 * 359.97438 * 13 11 9 15 15 Si 1.86794 * 119.99921 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47510 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47046 * 120.00226 * 15 13 11 18 18 H 1.48509 * 109.46992 * 240.00197 * 15 13 11 19 19 C 1.47028 * 125.64628 * 174.98904 * 6 4 3 20 20 C 1.46502 * 119.66775 * 179.75301 * 3 2 1 21 21 C 1.35533 * 119.04552 * 0.24592 * 20 3 2 22 22 C 1.41225 * 119.42809 * 0.02562 * 21 20 3 23 23 C 1.37909 * 132.97081 * 179.97438 * 22 21 20 24 24 N 1.33445 * 107.66202 * 180.02562 * 23 22 21 25 25 C 1.30751 * 109.93601 * 359.97438 * 24 23 22 26 26 N 1.35921 * 109.20531 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.47779 * 84.47845 * 1 2 3 28 28 H 1.08995 * 109.47610 * 204.48697 * 1 2 3 29 29 H 1.09002 * 109.46991 * 324.48458 * 1 2 3 30 30 H 1.09005 * 110.36741 * 322.93024 * 7 6 4 31 31 H 1.09000 * 110.36790 * 85.14587 * 7 6 4 32 32 H 1.08998 * 111.18942 * 204.97629 * 8 7 6 33 33 H 1.09007 * 111.02113 * 80.98259 * 8 7 6 34 34 H 0.96698 * 113.99680 * 177.56370 * 10 9 8 35 35 H 0.97000 * 119.99783 * 179.97438 * 14 13 11 36 36 H 1.08999 * 109.88409 * 59.55479 * 19 6 4 37 37 H 1.08997 * 110.00652 * 298.45956 * 19 6 4 38 38 H 1.07998 * 120.47172 * 180.27660 * 20 3 2 39 39 H 1.07996 * 120.28373 * 180.02562 * 21 20 3 40 40 H 1.08003 * 126.17229 * 0.03628 * 23 22 21 41 41 H 1.07993 * 125.39567 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1835 1.1835 0.0000 4 6 1.4440 2.4601 0.0006 5 8 0.4246 2.5725 -0.6528 6 7 1.8983 3.5016 0.7252 7 6 3.0552 3.4734 1.6384 8 6 2.7963 4.6277 2.6460 9 6 2.1524 5.6981 1.7258 10 8 3.1583 6.4433 1.0364 11 6 1.2609 6.6175 2.5201 12 1 1.1778 6.4976 3.5902 13 6 0.5513 7.6119 1.8807 14 7 0.6528 7.7582 0.5776 15 14 -0.5543 8.7510 2.8652 16 1 -0.4932 8.3805 4.3018 17 1 -0.0960 10.1534 2.6963 18 1 -1.9523 8.6252 2.3800 19 6 1.3227 4.8545 0.7351 20 6 3.6485 1.1814 0.0055 21 6 4.3048 -0.0045 0.0054 22 6 3.5645 -1.2072 -0.0005 23 6 3.9312 -2.5366 -0.0026 24 7 2.8131 -3.2650 -0.0093 25 6 1.7686 -2.4784 -0.0110 26 7 2.1836 -1.1841 -0.0059 27 1 -0.3634 0.0989 -1.0228 28 1 -0.3634 -0.9352 0.4259 29 1 -0.3633 0.8365 0.5970 30 1 3.1029 2.5179 2.1609 31 1 3.9786 3.6497 1.0866 32 1 3.7293 4.9921 3.0759 33 1 2.1032 4.3163 3.4276 34 1 2.8075 7.1005 0.4199 35 1 0.1533 8.4575 0.1278 36 1 0.2840 4.8130 1.0628 37 1 1.3796 5.2913 -0.2619 38 1 4.1975 2.1114 0.0100 39 1 5.3844 -0.0294 0.0098 40 1 4.9412 -2.9194 0.0007 41 1 0.7394 -2.8053 -0.0164 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647248407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:00 Heat of formation + Delta-G solvation = 9.120622 kcal Electronic energy + Delta-G solvation = -26400.894137 eV Core-core repulsion = 22668.141052 eV Total energy + Delta-G solvation = -3732.753085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.89618 -39.82884 -37.76273 -36.73799 -34.64933 -33.94508 -32.27933 -31.68525 -30.24167 -29.01141 -27.98401 -27.46714 -25.40670 -23.78745 -22.89933 -22.38449 -21.23521 -19.79198 -19.31389 -18.12392 -17.28788 -16.88654 -16.25496 -15.96143 -15.74280 -15.51645 -14.90664 -14.75720 -14.33354 -14.09585 -13.73009 -13.61992 -13.40185 -13.09076 -13.06304 -12.84376 -12.52176 -12.17361 -11.83511 -11.69111 -11.58685 -11.45274 -11.13567 -10.91340 -10.75685 -10.73853 -10.53718 -10.46774 -10.26440 -9.67909 -9.43181 -9.26586 -8.75818 -8.41464 -8.07279 -7.64130 -6.37134 -4.45683 0.59124 0.92918 2.30105 2.70907 3.01110 3.14713 3.24257 3.27330 3.35697 3.51610 4.15946 4.20531 4.40281 4.49766 4.58433 4.66697 4.79525 4.90926 5.17358 5.26070 5.29940 5.33168 5.41798 5.55023 5.62424 5.73895 5.79907 5.88241 5.94909 5.99442 6.07954 6.33985 6.37933 6.43214 6.64391 6.72913 6.80347 6.96898 7.15078 7.25707 7.65193 7.67888 7.90102 8.00700 8.45866 8.58627 9.21890 9.31283 10.70721 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.003344 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.569336 B = 8370.767925 C = 8857.777196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.144 3.856 3 C -0.144 4.144 4 C 0.573 3.427 5 O -0.540 6.540 6 N -0.599 5.599 7 C 0.099 3.901 8 C -0.118 4.118 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.538 4.538 12 H 0.068 0.932 13 C 0.071 3.929 14 N -0.895 5.895 15 Si 0.904 3.096 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.103 3.897 20 C -0.091 4.091 21 C -0.092 4.092 22 C 0.012 3.988 23 C -0.027 4.027 24 N -0.454 5.454 25 C 0.145 3.855 26 N -0.371 5.371 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.385 0.615 35 H 0.271 0.729 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.181 0.819 41 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.756 -14.142 -0.190 14.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.040 3.960 3 C -0.150 4.150 4 C 0.360 3.640 5 O -0.420 6.420 6 N -0.331 5.331 7 C -0.023 4.023 8 C -0.155 4.155 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.576 4.576 12 H 0.086 0.914 13 C -0.133 4.133 14 N -0.534 5.534 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.018 4.018 20 C -0.111 4.111 21 C -0.111 4.111 22 C -0.096 4.096 23 C -0.180 4.180 24 N -0.167 5.167 25 C -0.130 4.130 26 N -0.043 5.043 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.236 0.764 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.198 0.802 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.345 -15.307 -0.373 15.916 hybrid contribution -0.916 1.878 0.026 2.089 sum 3.429 -13.429 -0.347 13.864 Atomic orbital electron populations 1.21015 0.86718 1.03958 1.05311 1.20228 0.95190 0.82823 0.97764 1.20386 0.93960 0.92536 1.08126 1.17275 0.84229 0.82252 0.80283 1.90794 1.24386 1.83106 1.43675 1.48656 1.30864 1.11605 1.41932 1.22560 0.88862 0.99343 0.91584 1.22853 1.01572 0.94272 0.96852 1.19496 0.84780 0.87778 0.87174 1.86092 1.36798 1.55280 1.61290 1.21551 1.26274 1.15105 0.94705 0.91418 1.25077 0.96030 0.97088 0.95067 1.69639 1.42409 1.33437 1.07899 0.86339 0.80030 0.80276 0.80225 1.19565 1.20696 1.20737 1.23111 0.98719 0.78092 1.01904 1.22321 0.91633 0.99012 0.98152 1.20389 1.00127 0.88829 1.01774 1.19769 0.82379 0.97133 1.10322 1.22522 0.98020 0.87015 1.10407 1.69944 0.97910 1.33058 1.15771 1.25043 1.00537 0.76489 1.10938 1.42914 1.07568 1.06524 1.47334 0.88514 0.91147 0.88403 0.91816 0.91428 0.90263 0.90423 0.76407 0.91943 0.91240 0.91385 0.83496 0.83164 0.80228 0.77261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 8.51 36.00 0.31 -1.04 16 2 C 0.14 1.95 6.82 -81.26 -0.55 1.40 16 3 C -0.14 -2.15 5.43 -103.47 -0.56 -2.71 16 4 C 0.57 10.53 6.82 -12.48 -0.09 10.44 16 5 O -0.54 -11.38 15.23 5.28 0.08 -11.30 16 6 N -0.60 -11.37 3.33 -171.44 -0.57 -11.94 16 7 C 0.10 1.61 5.27 -2.27 -0.01 1.59 16 8 C -0.12 -2.18 6.26 -24.33 -0.15 -2.33 16 9 C 0.25 5.65 0.85 -89.94 -0.08 5.57 16 10 O -0.59 -13.91 13.08 -35.23 -0.46 -14.37 16 11 C -0.54 -13.44 8.11 -34.44 -0.28 -13.72 16 12 H 0.07 1.67 7.77 -52.48 -0.41 1.27 16 13 C 0.07 1.77 5.27 -17.82 -0.09 1.68 16 14 N -0.89 -22.90 10.96 55.43 0.61 -22.30 16 15 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 16 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 C 0.10 2.33 5.38 -3.06 -0.02 2.31 16 20 C -0.09 -1.14 8.43 -37.22 -0.31 -1.45 16 21 C -0.09 -1.00 10.09 -39.41 -0.40 -1.40 16 22 C 0.01 0.15 6.78 -84.02 -0.57 -0.41 16 23 C -0.03 -0.32 12.00 -16.97 -0.20 -0.52 16 24 N -0.45 -5.88 11.19 -13.78 -0.15 -6.03 16 25 C 0.14 1.68 12.09 -89.36 -1.08 0.60 16 26 N -0.37 -4.75 2.94 -57.75 -0.17 -4.92 16 27 H 0.10 1.16 8.12 -51.93 -0.42 0.74 16 28 H 0.07 0.62 7.22 -51.93 -0.37 0.24 16 29 H 0.10 1.33 6.70 -51.93 -0.35 0.99 16 30 H 0.06 0.88 7.32 -51.93 -0.38 0.50 16 31 H 0.07 1.02 6.92 -51.93 -0.36 0.66 16 32 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 34 H 0.38 9.47 7.23 45.56 0.33 9.80 16 35 H 0.27 6.65 8.31 -40.82 -0.34 6.32 16 36 H 0.07 1.72 7.81 -51.93 -0.41 1.31 16 37 H 0.07 1.69 7.99 -51.93 -0.42 1.27 16 38 H 0.15 1.72 6.02 -52.49 -0.32 1.40 16 39 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.18 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.21 1.67 7.59 -52.49 -0.40 1.27 16 LS Contribution 336.99 15.07 5.08 5.08 Total: -1.00 -29.45 336.99 -9.02 -38.47 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -4.32 Total: 12.53 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -4.09 Total: 0.00 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: -0.29 Total: -45.19 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.38 Total: -25.67 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.45 -9.02 -38.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647248407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.586 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds