Wall clock time and date at job start Tue Mar 31 2020 11:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38268 * 119.91772 * 2 1 4 4 C 1.38147 * 120.10946 * 180.30082 * 3 2 1 5 5 C 1.38829 * 119.95074 * 359.42009 * 4 3 2 6 6 N 1.39848 * 120.08390 * 180.29811 * 5 4 3 7 7 C 1.46903 * 110.99710 * 63.95387 * 6 5 4 8 8 C 1.46898 * 110.99838 * 300.00434 * 6 5 4 9 9 C 1.50709 * 109.46809 * 189.99455 * 8 6 5 10 10 C 1.38293 * 119.93340 * 269.72809 * 9 8 6 11 11 C 1.38102 * 120.07131 * 179.72912 * 10 9 8 12 12 C 1.38882 * 119.92621 * 0.56112 * 11 10 9 13 13 O 1.35747 * 120.06655 * 179.68369 * 12 11 10 14 14 C 1.34835 * 116.99804 * 174.48846 * 13 12 11 15 15 H 1.07995 * 119.99582 * 5.06602 * 14 13 12 16 16 C 1.38654 * 119.99944 * 185.05345 * 14 13 12 17 17 N 1.31553 * 119.99803 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00013 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46960 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46996 * 120.00470 * 18 16 14 21 21 H 1.48499 * 109.47059 * 240.00728 * 18 16 14 22 22 C 1.38875 * 119.86206 * 359.71204 * 12 11 10 23 23 C 1.38099 * 119.93319 * 359.97438 * 22 12 11 24 24 C 1.39072 * 119.84110 * 0.28132 * 5 4 3 25 25 F 1.35102 * 120.06273 * 180.02562 * 24 5 4 26 26 C 1.38283 * 119.91793 * 179.69791 * 2 1 3 27 27 H 1.08997 * 109.47153 * 270.30034 * 1 2 3 28 28 H 1.09000 * 109.47045 * 30.30210 * 1 2 3 29 29 H 1.09004 * 109.47042 * 150.30219 * 1 2 3 30 30 H 1.08006 * 119.94634 * 0.02562 * 3 2 1 31 31 H 1.08000 * 120.02866 * 179.69786 * 4 3 2 32 32 H 1.09002 * 109.46869 * 60.00399 * 7 6 5 33 33 H 1.08999 * 109.47410 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.47498 * 300.00179 * 7 6 5 35 35 H 1.08990 * 109.47202 * 309.99599 * 8 6 5 36 36 H 1.09004 * 109.47185 * 70.00293 * 8 6 5 37 37 H 1.08010 * 119.96497 * 359.97438 * 10 9 8 38 38 H 1.08002 * 120.03518 * 180.27511 * 11 10 9 39 39 H 0.97000 * 119.99863 * 179.97438 * 17 16 14 40 40 H 1.08005 * 120.03430 * 179.97438 * 22 12 11 41 41 H 1.08000 * 119.97138 * 179.97438 * 23 22 12 42 42 H 1.07998 * 119.97588 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1984 0.0000 4 6 3.5781 1.2031 -0.0063 5 6 4.2753 0.0025 -0.0004 6 7 5.6737 0.0040 -0.0004 7 6 6.1995 0.6128 1.2288 8 6 6.1994 0.6846 -1.1914 9 6 7.6860 0.4558 -1.2855 10 6 8.5601 1.3424 -0.6834 11 6 9.9227 1.1325 -0.7631 12 6 10.4154 0.0361 -1.4587 13 8 11.7545 -0.1694 -1.5442 14 6 12.1621 -1.3111 -2.1345 15 1 11.4385 -1.9736 -2.5860 16 6 13.5101 -1.6343 -2.1621 17 7 14.3914 -0.8274 -1.6119 18 14 14.0749 -3.2157 -2.9806 19 1 12.8971 -3.9418 -3.5200 20 1 15.0078 -2.8930 -4.0900 21 1 14.7687 -4.0691 -1.9828 22 6 9.5352 -0.8493 -2.0670 23 6 8.1735 -0.6375 -1.9782 24 6 3.5796 -1.2017 0.0058 25 9 4.2535 -2.3726 0.0121 26 6 2.1967 -1.1985 0.0063 27 1 -0.3633 0.0054 1.0276 28 1 -0.3633 0.8873 -0.5185 29 1 -0.3633 -0.8927 -0.5091 30 1 1.6544 2.1325 0.0004 31 1 4.1154 2.1399 -0.0112 32 1 5.8506 0.0468 2.0925 33 1 7.2891 0.6007 1.2030 34 1 5.8489 1.6422 1.3032 35 1 5.7134 0.2859 -2.0818 36 1 6.0004 1.7537 -1.1166 37 1 8.1765 2.1978 -0.1469 38 1 10.6047 1.8229 -0.2889 39 1 15.3344 -1.0537 -1.6308 40 1 9.9153 -1.7027 -2.6090 41 1 7.4885 -1.3254 -2.4514 42 1 1.6550 -2.1328 0.0108 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653895142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:50 Heat of formation + Delta-G solvation = -31.656021 kcal Electronic energy + Delta-G solvation = -24933.323819 eV Core-core repulsion = 21178.882564 eV Total energy + Delta-G solvation = -3754.441255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.138 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.74219 -41.10311 -40.51416 -38.81100 -37.34363 -34.34573 -32.92071 -31.87513 -31.53841 -31.17079 -28.29768 -27.72811 -26.79869 -24.62471 -23.72750 -23.56607 -22.22835 -21.48384 -19.85890 -18.84242 -18.27692 -17.55217 -17.42603 -16.86643 -16.45220 -16.34086 -16.08274 -15.63541 -15.47315 -15.37083 -15.10564 -14.87947 -14.70480 -14.38768 -14.35289 -14.17291 -13.96752 -13.59398 -13.11745 -12.99978 -12.96819 -12.75536 -12.68488 -12.54587 -12.37283 -12.28151 -12.21704 -12.11810 -11.89782 -11.18583 -10.81615 -9.85763 -9.78079 -9.53155 -9.41206 -8.90396 -8.48472 -6.16259 0.12580 0.23480 0.58902 0.65545 1.33993 1.41960 1.52223 2.16701 2.55681 2.65322 2.95464 3.23329 3.37487 3.50749 3.79925 3.92141 3.96501 4.00590 4.17565 4.24179 4.31947 4.33139 4.36447 4.55956 4.58316 4.66659 4.67288 4.72140 4.80213 4.88946 5.00480 5.04173 5.05862 5.13319 5.14622 5.27375 5.30089 5.32552 5.54388 5.55338 5.70076 5.75530 5.81699 5.93253 6.02265 6.19562 6.39813 6.96549 7.76864 8.74853 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.027644 B = 0.002526 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.617239 B =11083.156566 C =11730.551461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.061 4.061 3 C -0.118 4.118 4 C -0.118 4.118 5 C 0.036 3.964 6 N -0.519 5.519 7 C 0.030 3.970 8 C 0.125 3.875 9 C -0.156 4.156 10 C -0.053 4.053 11 C -0.202 4.202 12 C 0.116 3.884 13 O -0.231 6.231 14 C -0.413 4.413 15 H 0.099 0.901 16 C -0.023 4.023 17 N -0.919 5.919 18 Si 1.018 2.982 19 H -0.254 1.254 20 H -0.266 1.266 21 H -0.268 1.268 22 C -0.244 4.244 23 C -0.052 4.052 24 C 0.094 3.906 25 F -0.149 7.149 26 C -0.158 4.158 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.144 0.856 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.150 0.850 38 H 0.116 0.884 39 H 0.273 0.727 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.307 4.225 3.358 29.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.061 4.061 3 C -0.137 4.137 4 C -0.138 4.138 5 C -0.059 4.059 6 N -0.240 5.240 7 C -0.117 4.117 8 C -0.001 4.001 9 C -0.157 4.157 10 C -0.071 4.071 11 C -0.222 4.222 12 C 0.066 3.934 13 O -0.137 6.137 14 C -0.489 4.489 15 H 0.116 0.884 16 C -0.220 4.220 17 N -0.558 5.558 18 Si 0.837 3.163 19 H -0.177 1.177 20 H -0.191 1.191 21 H -0.193 1.193 22 C -0.263 4.263 23 C -0.070 4.070 24 C 0.074 3.926 25 F -0.127 7.127 26 C -0.177 4.177 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.174 0.826 31 H 0.161 0.839 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.167 0.833 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -28.700 3.845 3.450 29.162 hybrid contribution 1.081 -0.377 -0.262 1.175 sum -27.619 3.468 3.189 28.018 Atomic orbital electron populations 1.20884 0.88213 1.04235 1.03645 1.20132 0.97940 0.91541 0.96518 1.21324 0.93255 0.98994 1.00127 1.21734 0.95540 0.97385 0.99124 1.18968 0.89386 0.92431 1.05107 1.59445 1.03838 1.57011 1.03737 1.22478 1.01053 0.97762 0.90376 1.20844 0.89964 0.97263 0.91989 1.19475 0.95095 0.97286 1.03817 1.20860 0.90543 0.98699 0.96992 1.20449 0.96616 0.99114 1.05976 1.19942 0.84150 0.95141 0.94192 1.83938 1.18267 1.40270 1.71267 1.21829 0.93448 0.97874 1.35721 0.88373 1.26572 0.94445 1.03141 0.97867 1.70182 1.02628 1.38745 1.44201 0.84539 0.78867 0.75109 0.77748 1.17746 1.19117 1.19282 1.21211 0.94386 1.02799 1.07919 1.20845 0.93201 0.96333 0.96633 1.18037 0.90461 0.80436 1.03640 1.91462 1.81107 1.46298 1.93860 1.21208 0.90960 1.00823 1.04689 0.89722 0.89669 0.90647 0.82595 0.83869 0.91851 0.91214 0.92978 0.90414 0.91650 0.83265 0.86555 0.91808 0.86713 0.85513 0.83462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.75 10.01 71.24 0.71 -0.04 16 2 C -0.06 -0.80 5.88 -19.85 -0.12 -0.91 16 3 C -0.12 -1.48 9.69 22.26 0.22 -1.26 16 4 C -0.12 -1.93 8.66 22.39 0.19 -1.73 16 5 C 0.04 0.81 4.69 38.20 0.18 0.99 16 6 N -0.52 -13.42 4.56 -724.17 -3.30 -16.72 16 7 C 0.03 0.68 9.04 127.69 1.15 1.84 16 8 C 0.12 3.12 4.70 85.56 0.40 3.52 16 9 C -0.16 -5.03 4.89 -19.83 -0.10 -5.12 16 10 C -0.05 -1.73 7.90 22.25 0.18 -1.56 16 11 C -0.20 -8.62 9.99 22.39 0.22 -8.40 16 12 C 0.12 5.93 6.65 22.58 0.15 6.08 16 13 O -0.23 -14.18 9.76 -22.75 -0.22 -14.40 16 14 C -0.41 -24.64 9.49 67.92 0.64 -24.00 16 15 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 16 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 17 N -0.92 -57.18 13.67 21.61 0.30 -56.88 16 18 Si 1.02 43.98 29.55 68.60 2.03 46.01 16 19 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 20 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 22 C -0.24 -11.17 9.17 22.39 0.21 -10.96 16 23 C -0.05 -1.93 9.69 22.25 0.22 -1.71 16 24 C 0.09 2.27 7.31 22.48 0.16 2.43 16 25 F -0.15 -4.41 17.08 44.97 0.77 -3.64 16 26 C -0.16 -2.77 9.67 22.29 0.22 -2.55 16 27 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.08 0.34 8.09 -2.39 -0.02 0.32 16 29 H 0.07 0.44 8.08 -2.39 -0.02 0.42 16 30 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 31 H 0.14 1.88 7.14 -2.91 -0.02 1.86 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.84 5.91 -2.39 -0.01 1.83 16 34 H 0.05 0.94 7.35 -2.39 -0.02 0.92 16 35 H 0.08 1.93 8.00 -2.39 -0.02 1.91 16 36 H 0.07 1.32 7.42 -2.38 -0.02 1.30 16 37 H 0.15 3.71 8.00 -2.91 -0.02 3.68 16 38 H 0.12 4.86 8.06 -2.91 -0.02 4.83 16 39 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 40 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 41 H 0.13 4.21 8.06 -2.91 -0.02 4.18 16 42 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -74.06 356.51 5.71 -68.35 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 1.03 Total: 21.54 kcal Atomic # 6 Polarization: -49.36 SS G_CDS: 5.11 Total: -44.26 kcal Atomic # 7 Polarization: -70.60 SS G_CDS: -3.01 Total: -73.61 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.22 Total: -14.40 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.77 Total: -3.64 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -74.06 5.71 -68.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653895142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.697 kcal (2) G-P(sol) polarization free energy of solvation -74.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds