Wall clock time and date at job start Tue Mar 31 2020 10:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 119.99933 * 2 1 4 4 H 1.48496 * 109.46779 * 269.99855 * 3 2 1 5 5 H 1.48494 * 109.46935 * 29.99737 * 3 2 1 6 6 H 1.48504 * 109.47185 * 149.99769 * 3 2 1 7 7 C 1.38817 * 120.00044 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00174 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99720 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00028 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.46958 * 325.00091 * 10 9 7 12 12 C 1.52995 * 109.47466 * 205.00044 * 10 9 7 13 13 N 1.46491 * 109.47455 * 55.00006 * 12 10 9 14 14 C 1.34778 * 120.00442 * 180.02562 * 13 12 10 15 15 O 1.21558 * 119.99752 * 359.97438 * 14 13 12 16 16 C 1.47785 * 120.00072 * 180.02562 * 14 13 12 17 17 N 1.32821 * 120.07194 * 0.02562 * 16 14 13 18 18 C 1.31676 * 122.00744 * 180.02562 * 17 16 14 19 19 C 1.38396 * 121.70433 * 359.97438 * 18 17 16 20 20 C 1.38856 * 119.13096 * 0.02562 * 19 18 17 21 21 O 1.34433 * 134.63428 * 180.34572 * 20 19 18 22 22 C 1.34450 * 110.85109 * 180.11984 * 21 20 19 23 23 C 1.34308 * 110.16478 * 359.54727 * 22 21 20 24 24 C 1.40195 * 120.07183 * 179.97438 * 16 14 13 25 25 C 1.53008 * 109.47294 * 84.99756 * 10 9 7 26 26 C 1.53002 * 117.49358 * 8.74872 * 25 10 9 27 27 C 1.53005 * 117.49794 * 300.09236 * 25 10 9 28 28 H 0.97001 * 120.00438 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00384 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46771 * 294.99907 * 12 10 9 31 31 H 1.09003 * 109.47236 * 175.00230 * 12 10 9 32 32 H 0.97003 * 119.99868 * 359.97438 * 13 12 10 33 33 H 1.07999 * 119.15025 * 179.97438 * 18 17 16 34 34 H 1.08000 * 120.43240 * 179.97438 * 19 18 17 35 35 H 1.08002 * 124.91898 * 179.81772 * 22 21 20 36 36 H 1.08005 * 126.88909 * 180.24864 * 23 22 21 37 37 H 1.08989 * 115.55230 * 154.41733 * 25 10 9 38 38 H 1.08999 * 117.50527 * 0.02562 * 26 25 10 39 39 H 1.09005 * 117.49731 * 145.01820 * 26 25 10 40 40 H 1.08995 * 117.49923 * 214.97425 * 27 25 10 41 41 H 1.08998 * 117.49682 * 359.97225 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5646 -3.2065 0.5901 12 6 5.4991 -2.2589 0.6113 13 7 5.3611 -1.6642 1.9429 14 6 6.4588 -1.3862 2.6739 15 8 7.5633 -1.6295 2.2284 16 6 6.3195 -0.7868 4.0175 17 7 5.1133 -0.5218 4.5063 18 6 4.9450 0.0123 5.6980 19 6 6.0190 0.3283 6.5117 20 6 7.3072 0.0760 6.0590 21 8 8.5385 0.2460 6.5710 22 6 9.4788 -0.1688 5.7041 23 6 8.9024 -0.6395 4.5861 24 6 7.4603 -0.4975 4.7794 25 6 4.2589 -2.9751 -1.4360 26 6 3.8387 -2.0292 -2.5629 27 6 2.9756 -3.2472 -2.2237 28 1 -0.4851 0.8400 0.0004 29 1 3.8646 -0.3620 0.0007 30 1 6.0785 -1.5914 -0.0266 31 1 6.0105 -3.2181 0.6929 32 1 4.4797 -1.4697 2.2983 33 1 3.9430 0.2088 6.0497 34 1 5.8573 0.7662 7.4856 35 1 10.5433 -0.1330 5.8828 36 1 9.4037 -1.0429 3.7187 37 1 5.1106 -3.6298 -1.6199 38 1 3.4581 -1.0476 -2.2805 39 1 4.4138 -2.0620 -3.4882 40 1 2.9834 -4.0807 -2.9260 41 1 2.0270 -3.0673 -1.7179 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752473694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:44 Heat of formation + Delta-G solvation = 56.025478 kcal Electronic energy + Delta-G solvation = -25770.357077 eV Core-core repulsion = 22039.637939 eV Total energy + Delta-G solvation = -3730.719138 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.89671 -39.93384 -38.63033 -37.65890 -34.65052 -33.30620 -33.09353 -32.09107 -31.06304 -30.06824 -28.51843 -25.28780 -23.59105 -23.18844 -22.69825 -21.93982 -21.46617 -20.36994 -19.28698 -18.27909 -18.07678 -17.47900 -16.82918 -16.55747 -15.78054 -15.53178 -15.39941 -14.91546 -14.59536 -14.46026 -14.28121 -13.74944 -13.60161 -13.22066 -13.11871 -13.04461 -12.75114 -12.43796 -12.03887 -11.57165 -11.19835 -10.95104 -10.78863 -10.57485 -10.54466 -10.27776 -10.20597 -9.78365 -9.67283 -9.54565 -9.51376 -9.20810 -8.99549 -8.83592 -8.52331 -7.34826 -5.80596 -3.17188 0.16243 0.97477 2.05641 2.35732 2.75199 3.23156 3.35937 3.40494 3.44892 3.76418 4.03250 4.23558 4.31554 4.53920 4.56404 4.70715 4.80215 5.00744 5.16956 5.22895 5.32281 5.44602 5.47552 5.50540 5.64786 5.69331 5.76676 5.85563 5.95934 5.96740 6.03513 6.15535 6.29755 6.38468 6.56696 6.63194 6.68684 6.77878 7.02280 7.15134 7.50675 7.87009 7.94952 8.36429 8.38015 9.15145 9.87618 10.06408 11.37088 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015131 B = 0.003963 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.075380 B = 7063.268417 C = 8283.333638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.012 3.988 3 Si 0.876 3.124 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.276 1.276 7 C -0.243 4.243 8 H 0.094 0.906 9 N -0.742 5.742 10 C 0.198 3.802 11 H 0.067 0.933 12 C 0.114 3.886 13 N -0.691 5.691 14 C 0.566 3.434 15 O -0.541 6.541 16 C 0.141 3.859 17 N -0.454 5.454 18 C 0.114 3.886 19 C -0.139 4.139 20 C 0.078 3.922 21 O -0.190 6.190 22 C -0.002 4.002 23 C -0.173 4.173 24 C -0.136 4.136 25 C -0.178 4.178 26 C -0.165 4.165 27 C -0.169 4.169 28 H 0.259 0.741 29 H 0.363 0.637 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.421 0.579 33 H 0.177 0.823 34 H 0.149 0.851 35 H 0.215 0.785 36 H 0.173 0.827 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.063 -1.774 11.175 19.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.184 4.184 3 Si 0.707 3.293 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.372 4.372 8 H 0.111 0.889 9 N -0.385 5.385 10 C 0.088 3.912 11 H 0.085 0.915 12 C -0.011 4.011 13 N -0.343 5.343 14 C 0.349 3.651 15 O -0.418 6.418 16 C -0.002 4.002 17 N -0.167 5.167 18 C -0.040 4.040 19 C -0.160 4.160 20 C 0.024 3.976 21 O -0.090 6.090 22 C -0.066 4.066 23 C -0.193 4.193 24 C -0.141 4.141 25 C -0.200 4.200 26 C -0.203 4.203 27 C -0.206 4.206 28 H 0.069 0.931 29 H 0.196 0.804 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.260 0.740 33 H 0.194 0.806 34 H 0.166 0.834 35 H 0.231 0.769 36 H 0.191 0.809 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 15.868 -2.091 10.622 19.209 hybrid contribution 0.912 1.560 0.464 1.866 sum 16.780 -0.531 11.087 20.119 Atomic orbital electron populations 1.69683 1.05065 1.25802 1.57138 1.24605 0.95070 0.96893 1.01823 0.86679 0.79400 0.85460 0.77766 1.21207 1.21853 1.20238 1.19000 0.80244 0.94593 1.43372 0.88874 1.42839 1.04179 1.01744 1.89770 1.19960 0.89532 0.89630 0.92124 0.91502 1.21734 0.98774 0.98192 0.82365 1.45910 1.09976 1.60948 1.17452 1.17663 0.84894 0.78909 0.83589 1.90730 1.25677 1.54038 1.71380 1.20821 0.87328 0.97181 0.94901 1.67760 1.23525 1.11268 1.14154 1.22695 0.98965 0.93854 0.88472 1.21218 0.87571 1.04257 1.02963 1.19711 0.86273 0.99120 0.92535 1.83965 1.12925 1.69650 1.42430 1.24250 0.94054 0.99572 0.88700 1.22714 0.90873 1.05124 1.00575 1.20635 0.95164 1.03039 0.95232 1.23002 0.98359 1.03635 0.94962 1.22845 1.03223 0.97198 0.96986 1.22899 0.96452 0.98630 1.02653 0.93055 0.80361 0.91417 0.91081 0.74006 0.80564 0.83366 0.76886 0.80944 0.89309 0.87212 0.91092 0.90860 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.90 13.97 55.49 0.78 -27.13 16 2 C 0.01 0.34 5.50 -17.43 -0.10 0.25 16 3 Si 0.88 21.52 27.74 -169.99 -4.71 16.81 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 7 C -0.24 -6.22 8.64 -15.06 -0.13 -6.35 16 8 H 0.09 2.58 7.14 -52.49 -0.37 2.20 16 9 N -0.74 -15.93 2.88 -53.42 -0.15 -16.08 16 10 C 0.20 3.53 2.86 -67.93 -0.19 3.34 16 11 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 12 C 0.11 1.85 5.21 -4.05 -0.02 1.83 16 13 N -0.69 -11.80 5.38 -61.27 -0.33 -12.13 16 14 C 0.57 9.75 7.80 -12.36 -0.10 9.66 16 15 O -0.54 -9.93 15.20 5.32 0.08 -9.85 16 16 C 0.14 2.25 6.78 -82.80 -0.56 1.69 16 17 N -0.45 -6.87 9.55 -9.68 -0.09 -6.96 16 18 C 0.11 1.32 11.13 -17.56 -0.20 1.13 16 19 C -0.14 -1.44 10.13 -39.29 -0.40 -1.84 16 20 C 0.08 0.97 7.48 -38.29 -0.29 0.68 16 21 O -0.19 -2.08 10.57 4.96 0.05 -2.03 16 22 C 0.00 -0.01 11.97 29.35 0.35 0.34 16 23 C -0.17 -2.06 10.31 -37.78 -0.39 -2.45 16 24 C -0.14 -1.95 6.16 -104.90 -0.65 -2.59 16 25 C -0.18 -2.98 5.71 -90.61 -0.52 -3.50 16 26 C -0.17 -2.98 9.74 -26.69 -0.26 -3.24 16 27 C -0.17 -3.01 9.87 -26.69 -0.26 -3.28 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.36 8.04 5.66 -40.82 -0.23 7.81 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.42 7.57 7.48 -40.82 -0.31 7.26 16 33 H 0.18 1.48 8.06 -52.49 -0.42 1.05 16 34 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.17 2.03 7.29 -52.48 -0.38 1.65 16 37 H 0.09 1.30 8.11 -51.94 -0.42 0.88 16 38 H 0.11 2.31 6.68 -51.93 -0.35 1.96 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.11 2.27 6.22 -51.93 -0.32 1.95 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -31.88 347.04 -7.79 -39.67 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -4.93 Total: 16.81 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -3.70 Total: -4.35 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: 0.20 Total: -62.30 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.13 Total: -11.87 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.71 Total: 16.81 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.88 -7.79 -39.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752473694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.699 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds