Wall clock time and date at job start Tue Mar 31 2020 10:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86806 * 119.99793 * 2 1 4 4 H 1.48497 * 109.46664 * 240.00036 * 3 2 1 5 5 H 1.48494 * 109.47054 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47014 * 119.99964 * 3 2 1 7 7 C 1.38812 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00025 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99961 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47303 * 174.85608 * 10 9 7 12 12 H 1.09006 * 109.99694 * 53.87792 * 11 10 9 13 13 C 1.54323 * 109.88154 * 292.78770 * 11 10 9 14 14 C 1.55164 * 102.94063 * 218.38718 * 13 11 10 15 15 C 1.54693 * 101.67685 * 35.33482 * 14 13 11 16 16 N 1.47018 * 109.88247 * 174.97537 * 11 10 9 17 17 C 1.34775 * 125.65127 * 298.31867 * 16 11 10 18 18 O 1.21657 * 119.99785 * 354.68117 * 17 16 11 19 19 C 1.46988 * 120.00239 * 174.66959 * 17 16 11 20 20 C 1.35846 * 125.12116 * 180.02562 * 19 17 16 21 21 C 1.46094 * 106.06772 * 179.97438 * 20 19 17 22 22 C 1.39449 * 135.07091 * 179.71383 * 21 20 19 23 23 N 1.31675 * 120.07340 * 179.84879 * 22 21 20 24 24 C 1.32306 * 122.14231 * 0.50844 * 23 22 21 25 25 C 1.37756 * 121.58230 * 359.71429 * 24 23 22 26 26 C 1.39236 * 118.95696 * 0.02562 * 25 24 23 27 27 O 1.34284 * 134.38070 * 179.97438 * 26 25 24 28 28 H 0.97000 * 120.00317 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00202 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46924 * 54.85806 * 10 9 7 31 31 H 1.09006 * 109.47412 * 294.85827 * 10 9 7 32 32 H 1.08995 * 110.72258 * 336.74631 * 13 11 10 33 33 H 1.08994 * 110.72037 * 100.02790 * 13 11 10 34 34 H 1.08994 * 111.00471 * 153.57088 * 14 13 11 35 35 H 1.08999 * 111.00179 * 277.42838 * 14 13 11 36 36 H 1.09000 * 110.39327 * 204.36664 * 15 14 13 37 37 H 1.09002 * 110.23696 * 82.10541 * 15 14 13 38 38 H 1.08000 * 126.96034 * 359.97433 * 20 19 17 39 39 H 1.07999 * 119.96692 * 0.30267 * 22 21 20 40 40 H 1.07996 * 119.21226 * 179.73691 * 24 23 22 41 41 H 1.08000 * 120.52221 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0016 10 6 2.0582 -3.6568 0.0016 11 6 1.0691 -4.8168 0.1322 12 1 0.3050 -4.7440 -0.6418 13 6 0.4082 -4.7885 1.5265 14 6 0.3137 -6.2923 1.8968 15 6 1.6115 -6.8518 1.2678 16 7 1.7816 -6.0972 0.0127 17 6 2.4711 -6.5147 -1.0674 18 8 2.4607 -5.8535 -2.0886 19 6 3.2359 -7.7687 -1.0117 20 6 3.9655 -8.2853 -2.0345 21 6 4.5458 -9.5276 -1.5301 22 6 5.3718 -10.5181 -2.0605 23 7 5.7294 -11.5458 -1.3190 24 6 5.3219 -11.6870 -0.0682 25 6 4.5010 -10.7581 0.5324 26 6 4.0929 -9.6460 -0.1993 27 8 3.3192 -8.5805 0.0643 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3881 0.0016 30 1 2.7528 -3.6752 0.8414 31 1 2.6133 -3.7559 -0.9313 32 1 1.0356 -4.2543 2.2399 33 1 -0.5844 -4.3412 1.4737 34 1 0.3112 -6.4289 2.9781 35 1 -0.5652 -6.7515 1.4444 36 1 1.5042 -7.9162 1.0590 37 1 2.4579 -6.6781 1.9324 38 1 4.0910 -7.8631 -3.0206 39 1 5.7246 -10.4385 -3.0781 40 1 5.6408 -12.5512 0.4956 41 1 4.1789 -10.8902 1.5548 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754613329.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:50 Heat of formation + Delta-G solvation = 6.965894 kcal Electronic energy + Delta-G solvation = -25544.367650 eV Core-core repulsion = 21811.521129 eV Total energy + Delta-G solvation = -3732.846521 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.87015 -41.33501 -39.97912 -38.85545 -36.47685 -34.13704 -33.65786 -33.01162 -32.52508 -31.03701 -30.29019 -26.83462 -26.39005 -24.85038 -24.34688 -23.59102 -22.82715 -21.94833 -20.95730 -19.53906 -19.09219 -18.67764 -18.00212 -17.50351 -17.01601 -16.74279 -16.48217 -16.25638 -15.61025 -15.53309 -15.34886 -15.11001 -15.06635 -14.65134 -14.46935 -14.42178 -14.11484 -13.89874 -13.66116 -13.08642 -12.96510 -12.76514 -12.64999 -12.26041 -12.12979 -11.95821 -11.87406 -11.67684 -11.55165 -11.53442 -10.97493 -10.79034 -10.55780 -9.97410 -9.48905 -9.07437 -7.99131 -5.29447 -0.71498 0.11677 0.57096 1.07255 1.44656 1.48515 1.54555 1.71786 1.86932 2.53461 2.67298 3.00369 3.30328 3.33229 3.42017 3.53961 3.61832 3.72917 3.80961 3.87243 4.03752 4.10812 4.20936 4.26978 4.28778 4.42524 4.58016 4.64356 4.66645 4.75864 4.81931 4.85250 4.97327 4.97848 5.06369 5.06925 5.23826 5.31251 5.34501 5.43554 5.69704 6.20667 6.23550 6.71922 6.84795 7.28893 7.98623 8.26808 9.23783 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.023229 B = 0.002804 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.078093 B = 9982.700879 C =10654.863118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.068 4.068 3 Si 0.976 3.024 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.275 1.275 7 C -0.253 4.253 8 H 0.068 0.932 9 N -0.734 5.734 10 C 0.154 3.846 11 C 0.136 3.864 12 H 0.063 0.937 13 C -0.115 4.115 14 C -0.117 4.117 15 C 0.097 3.903 16 N -0.600 5.600 17 C 0.602 3.398 18 O -0.549 6.549 19 C -0.036 4.036 20 C -0.089 4.089 21 C -0.216 4.216 22 C 0.176 3.824 23 N -0.512 5.512 24 C 0.122 3.878 25 C -0.158 4.158 26 C 0.086 3.914 27 O -0.175 6.175 28 H 0.254 0.746 29 H 0.378 0.622 30 H 0.024 0.976 31 H 0.002 0.998 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.184 0.816 39 H 0.189 0.811 40 H 0.205 0.795 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.865 -27.573 4.731 28.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.261 4.261 3 Si 0.804 3.196 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.384 4.384 8 H 0.086 0.914 9 N -0.378 5.378 10 C 0.026 3.974 11 C 0.033 3.967 12 H 0.081 0.919 13 C -0.153 4.153 14 C -0.154 4.154 15 C -0.024 4.024 16 N -0.331 5.331 17 C 0.391 3.609 18 O -0.429 6.429 19 C -0.085 4.085 20 C -0.111 4.111 21 C -0.219 4.219 22 C 0.013 3.987 23 N -0.222 5.222 24 C -0.027 4.027 25 C -0.178 4.178 26 C 0.031 3.969 27 O -0.075 6.075 28 H 0.063 0.937 29 H 0.210 0.790 30 H 0.042 0.958 31 H 0.019 0.981 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.105 0.895 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.201 0.799 39 H 0.206 0.794 40 H 0.222 0.778 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 7.423 -27.744 4.140 29.017 hybrid contribution -0.521 2.120 -0.165 2.190 sum 6.902 -25.623 3.975 26.833 Atomic orbital electron populations 1.69797 1.06460 1.26413 1.58804 1.25565 0.96498 1.00985 1.03071 0.85189 0.77288 0.78965 0.78163 1.20834 1.21537 1.20041 1.19504 0.91265 0.85283 1.42366 0.91359 1.42273 1.05558 1.00451 1.89513 1.20908 0.93979 0.85417 0.97107 1.21685 0.93250 0.81906 0.99868 0.91907 1.22600 1.01358 0.98345 0.93042 1.22794 0.96600 0.92983 1.03071 1.22665 0.99502 0.96623 0.83609 1.48498 1.50143 1.19196 1.15280 1.16601 0.78784 0.82756 0.82762 1.90918 1.64351 1.56108 1.31514 1.21640 1.05431 0.93917 0.87506 1.22924 0.95048 0.92996 1.00116 1.21056 1.05997 0.98921 0.95908 1.22857 0.89440 0.85943 1.00473 1.67910 1.23924 1.22603 1.07805 1.23290 0.91073 0.97994 0.90363 1.21451 1.02078 0.91137 1.03119 1.20440 0.92251 0.89256 0.94977 1.84061 1.57904 1.28936 1.36612 0.93701 0.78998 0.95811 0.98057 0.90716 0.89699 0.86512 0.89500 0.88458 0.90119 0.79912 0.79417 0.77791 0.80639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.59 13.06 21.65 0.28 -59.31 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.98 47.17 29.55 68.60 2.03 49.20 16 4 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.25 -14.82 9.99 84.03 0.84 -13.98 16 8 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 9 N -0.73 -39.44 5.41 -343.45 -1.86 -41.30 16 10 C 0.15 6.94 5.66 86.38 0.49 7.43 16 11 C 0.14 4.84 2.89 45.34 0.13 4.97 16 12 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 13 C -0.12 -3.24 6.23 31.78 0.20 -3.05 16 14 C -0.12 -2.16 7.07 31.91 0.23 -1.93 16 15 C 0.10 2.04 5.94 86.78 0.52 2.56 16 16 N -0.60 -18.29 3.07 -792.79 -2.43 -20.72 16 17 C 0.60 20.13 7.54 86.54 0.65 20.79 16 18 O -0.55 -22.78 16.01 -4.21 -0.07 -22.85 16 19 C -0.04 -0.95 6.88 24.01 0.17 -0.78 16 20 C -0.09 -2.05 10.80 23.75 0.26 -1.79 16 21 C -0.22 -4.25 6.43 -20.25 -0.13 -4.38 16 22 C 0.18 2.82 11.28 85.01 0.96 3.78 16 23 N -0.51 -8.19 10.34 -195.04 -2.02 -10.20 16 24 C 0.12 1.37 11.13 84.51 0.94 2.31 16 25 C -0.16 -1.94 10.13 22.40 0.23 -1.71 16 26 C 0.09 1.65 7.48 23.21 0.17 1.83 16 27 O -0.17 -3.89 7.84 -9.70 -0.08 -3.96 16 28 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.38 20.94 7.61 -92.71 -0.71 20.23 16 30 H 0.02 1.07 8.02 -2.39 -0.02 1.05 16 31 H 0.00 0.08 6.90 -2.38 -0.02 0.06 16 32 H 0.07 2.26 7.77 -2.39 -0.02 2.25 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 1.74 6.55 -2.39 -0.02 1.73 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.18 3.79 8.06 -2.91 -0.02 3.77 16 39 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.21 0.69 8.06 -2.91 -0.02 0.67 16 41 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 Total: -1.00 -76.45 347.49 2.33 -74.12 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.36 Total: 22.55 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 6.11 Total: 12.48 kcal Atomic # 7 Polarization: -125.52 SS G_CDS: -6.02 Total: -131.54 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.14 Total: -26.81 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -76.45 2.33 -74.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754613329.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.089 kcal (2) G-P(sol) polarization free energy of solvation -76.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds