Wall clock time and date at job start Tue Mar 31 2020 10:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99483 * 2 1 4 4 H 1.48493 * 109.47371 * 240.00255 * 3 2 1 5 5 H 1.48500 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46672 * 120.00071 * 3 2 1 7 7 C 1.38805 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99768 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00162 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00314 * 185.77991 * 9 7 2 11 11 C 1.53008 * 112.90545 * 292.59858 * 10 9 7 12 12 N 1.46494 * 109.46766 * 311.31845 * 11 10 9 13 13 C 1.34780 * 119.99852 * 175.68065 * 12 11 10 14 14 O 1.21652 * 119.99806 * 359.97438 * 13 12 11 15 15 C 1.46985 * 119.99976 * 180.02562 * 13 12 11 16 16 C 1.35848 * 125.11862 * 179.71554 * 15 13 12 17 17 C 1.46094 * 106.06823 * 179.89702 * 16 15 13 18 18 C 1.39452 * 135.07560 * 180.08756 * 17 16 15 19 19 N 1.31675 * 120.07389 * 180.28160 * 18 17 16 20 20 C 1.32301 * 122.14433 * 359.97438 * 19 18 17 21 21 C 1.37753 * 121.58532 * 0.02562 * 20 19 18 22 22 C 1.39246 * 118.95410 * 359.97438 * 21 20 19 23 23 O 1.34279 * 134.37718 * 180.02562 * 22 21 20 24 24 C 1.53785 * 113.61435 * 63.84565 * 10 9 7 25 25 C 1.53777 * 87.08114 * 89.12078 * 24 10 9 26 26 C 1.53775 * 87.08290 * 25.43041 * 25 24 10 27 27 H 0.96992 * 120.00583 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00064 * 5.77459 * 9 7 2 29 29 H 1.09000 * 109.47145 * 71.32319 * 11 10 9 30 30 H 1.08995 * 109.46984 * 191.32069 * 11 10 9 31 31 H 0.97002 * 120.00306 * 355.67796 * 12 11 10 32 32 H 1.08008 * 126.96448 * 0.02562 * 16 15 13 33 33 H 1.08001 * 119.95994 * 0.27931 * 18 17 16 34 34 H 1.08000 * 119.21114 * 180.02562 * 20 19 18 35 35 H 1.07996 * 120.52675 * 180.02562 * 21 20 19 36 36 H 1.09000 * 113.61224 * 334.56852 * 24 10 9 37 37 H 1.09004 * 113.61540 * 203.66703 * 24 10 9 38 38 H 1.09000 * 113.61457 * 139.98089 * 25 24 10 39 39 H 1.09003 * 113.61522 * 270.88680 * 25 24 10 40 40 H 1.09009 * 113.61415 * 89.11484 * 26 25 24 41 41 H 1.09006 * 113.62062 * 219.93643 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1037 1.6967 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0527 -3.6535 0.1267 11 6 2.9291 -3.9617 -1.0891 12 7 2.1455 -3.7825 -2.3138 13 6 2.7369 -3.9147 -3.5177 14 8 3.9216 -4.1824 -3.5872 15 6 1.9508 -3.7344 -4.7465 16 6 2.4403 -3.8377 -6.0095 17 6 1.3118 -3.5853 -6.9024 18 6 1.1371 -3.5431 -8.2853 19 7 -0.0476 -3.2734 -8.7928 20 6 -1.1025 -3.0360 -8.0304 21 6 -1.0187 -3.0575 -6.6556 22 6 0.2082 -3.3370 -6.0594 23 8 0.6344 -3.4365 -4.7899 24 6 2.7851 -3.8109 1.4697 25 6 1.4905 -4.4387 2.0125 26 6 1.1662 -4.8323 0.5617 27 1 -0.4850 0.8399 0.0004 28 1 0.3594 -2.3902 -0.0847 29 1 3.7835 -3.2849 -1.1021 30 1 3.2820 -4.9912 -1.0310 31 1 1.2009 -3.5687 -2.2584 32 1 3.4571 -4.0631 -6.2956 33 1 1.9745 -3.7318 -8.9407 34 1 -2.0522 -2.8201 -8.4972 35 1 -1.8910 -2.8616 -6.0497 36 1 3.0413 -2.8621 1.9411 37 1 3.6243 -4.5055 1.4307 38 1 1.6609 -5.2922 2.6687 39 1 0.7958 -3.7119 2.4334 40 1 1.5627 -5.8062 0.2744 41 1 0.1150 -4.7094 0.3005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754989327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:21 Heat of formation + Delta-G solvation = 41.665885 kcal Electronic energy + Delta-G solvation = -25737.348468 eV Core-core repulsion = 22006.006651 eV Total energy + Delta-G solvation = -3731.341817 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.80320 -39.68648 -39.06697 -38.39835 -34.22651 -33.30432 -33.06177 -31.86748 -30.30833 -29.92059 -27.59171 -25.31816 -24.78574 -23.82987 -23.50417 -22.21884 -21.47596 -20.57323 -18.76160 -18.11621 -17.94180 -17.17727 -16.60696 -16.14455 -15.85148 -15.54232 -15.12567 -14.68800 -14.65710 -14.49292 -14.10220 -13.82396 -13.58983 -13.42694 -13.31307 -13.19594 -12.77288 -12.26021 -11.77868 -11.75951 -11.27553 -11.07967 -10.86896 -10.52845 -10.41622 -10.36620 -10.26267 -10.03838 -9.94044 -9.73505 -9.58384 -9.55029 -8.96089 -8.80143 -8.46634 -7.12806 -5.88439 -3.19284 0.30026 1.05352 1.65439 2.26530 3.21973 3.35258 3.38223 3.43174 3.44262 3.53813 4.14500 4.21193 4.43420 4.49884 4.67882 4.82324 5.05249 5.12823 5.17282 5.19336 5.24648 5.41176 5.43673 5.45959 5.54751 5.69512 5.74163 5.92280 5.97008 6.08456 6.14096 6.17073 6.29350 6.31602 6.37180 6.57697 6.69742 6.77382 6.89775 7.00340 7.64296 7.68012 7.75371 8.27794 8.30402 9.41215 9.93277 10.28592 11.33213 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012047 B = 0.003982 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.729136 B = 7030.257536 C = 8122.709796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.005 4.005 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.699 5.699 10 C 0.171 3.829 11 C 0.117 3.883 12 N -0.680 5.680 13 C 0.591 3.409 14 O -0.528 6.528 15 C -0.007 4.007 16 C -0.112 4.112 17 C -0.198 4.198 18 C 0.171 3.829 19 N -0.496 5.496 20 C 0.112 3.888 21 C -0.157 4.157 22 C 0.104 3.896 23 O -0.172 6.172 24 C -0.148 4.148 25 C -0.128 4.128 26 C -0.145 4.145 27 H 0.257 0.743 28 H 0.387 0.613 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.411 0.589 32 H 0.175 0.825 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.148 0.852 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.672 -10.488 -10.054 14.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.078 3.922 11 C -0.009 4.009 12 N -0.328 5.328 13 C 0.374 3.626 14 O -0.408 6.408 15 C -0.057 4.057 16 C -0.134 4.134 17 C -0.201 4.201 18 C 0.007 3.993 19 N -0.206 5.206 20 C -0.037 4.037 21 C -0.177 4.177 22 C 0.048 3.952 23 O -0.071 6.071 24 C -0.188 4.188 25 C -0.165 4.165 26 C -0.183 4.183 27 H 0.066 0.934 28 H 0.222 0.778 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.247 0.753 32 H 0.193 0.807 33 H 0.183 0.817 34 H 0.186 0.814 35 H 0.166 0.834 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.104 -10.418 -10.641 14.892 hybrid contribution -0.148 1.213 0.926 1.533 sum -0.252 -9.204 -9.715 13.385 Atomic orbital electron populations 1.69633 1.05065 1.25962 1.57047 1.24717 0.95443 0.97625 1.02413 0.86323 0.78642 0.83602 0.77968 1.21263 1.21682 1.21120 1.19038 0.91007 0.83549 1.43344 0.91196 1.42064 1.06013 0.98992 1.86910 1.20847 0.92563 0.87846 0.90957 1.21997 0.95316 0.99852 0.83692 1.45711 1.14627 1.67702 1.04794 1.16630 0.85799 0.78670 0.81466 1.90854 1.13646 1.50261 1.86008 1.22399 0.81200 1.05499 0.96637 1.22625 0.99476 1.01861 0.89408 1.20968 0.94220 1.08625 0.96273 1.22417 0.95032 0.91776 0.90100 1.67780 0.99261 1.13634 1.39936 1.22577 0.97696 0.94670 0.88797 1.21103 0.95145 1.05730 0.95742 1.19893 0.95548 0.97708 0.82060 1.84060 1.24099 1.72337 1.26579 1.23273 0.96170 1.01069 0.98321 1.22623 0.98671 0.99737 0.95511 1.23202 1.00111 0.97632 0.97334 0.93367 0.77842 0.91177 0.92081 0.75313 0.80748 0.81735 0.81420 0.83419 0.90495 0.91296 0.92707 0.89938 0.90434 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.49 13.07 55.49 0.73 -25.76 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.90 21.90 29.55 -169.99 -5.02 16.87 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.11 9.23 -15.06 -0.14 -6.25 16 8 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 9 N -0.70 -15.55 4.56 -46.47 -0.21 -15.76 16 10 C 0.17 3.03 0.91 -131.00 -0.12 2.91 16 11 C 0.12 2.04 5.06 -4.04 -0.02 2.02 16 12 N -0.68 -11.83 5.39 -61.52 -0.33 -12.16 16 13 C 0.59 10.35 7.80 -12.72 -0.10 10.25 16 14 O -0.53 -10.24 16.82 5.23 0.09 -10.15 16 15 C -0.01 -0.12 7.07 -36.90 -0.26 -0.38 16 16 C -0.11 -1.51 10.80 -37.29 -0.40 -1.91 16 17 C -0.20 -2.55 6.43 -105.22 -0.68 -3.22 16 18 C 0.17 1.88 11.28 -17.17 -0.19 1.68 16 19 N -0.50 -5.71 10.34 -13.00 -0.13 -5.84 16 20 C 0.11 1.13 11.13 -17.53 -0.20 0.93 16 21 C -0.16 -1.75 10.13 -39.38 -0.40 -2.15 16 22 C 0.10 1.45 7.48 -38.13 -0.29 1.16 16 23 O -0.17 -2.70 10.26 3.71 0.04 -2.66 16 24 C -0.15 -2.46 7.27 -25.92 -0.19 -2.65 16 25 C -0.13 -1.96 7.99 -25.92 -0.21 -2.16 16 26 C -0.14 -2.17 7.37 -25.92 -0.19 -2.36 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 28 H 0.39 9.24 7.89 -40.82 -0.32 8.92 16 29 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.06 0.95 7.94 -51.93 -0.41 0.54 16 31 H 0.41 7.19 7.82 -40.82 -0.32 6.87 16 32 H 0.18 1.98 8.06 -52.48 -0.42 1.56 16 33 H 0.17 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.17 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.08 1.46 7.79 -51.93 -0.40 1.05 16 37 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.08 1.01 7.96 -51.92 -0.41 0.60 16 41 H 0.06 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 355.15 15.07 5.35 5.35 Total: -1.00 -30.37 355.15 -8.19 -38.56 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -5.22 Total: 13.91 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -3.47 Total: -2.37 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: 0.05 Total: -59.52 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: 0.13 Total: -12.81 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.37 -8.19 -38.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754989327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.224 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds