Wall clock time and date at job start Tue Mar 31 2020 10:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 119.99483 * 2 1 4 4 H 1.48493 * 109.47371 * 240.00255 * 3 2 1 5 5 H 1.48500 * 109.47054 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46672 * 120.00071 * 3 2 1 7 7 C 1.38805 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99768 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00162 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00314 * 185.77991 * 9 7 2 11 11 C 1.53008 * 112.90545 * 292.59858 * 10 9 7 12 12 N 1.46494 * 109.46766 * 311.31845 * 11 10 9 13 13 C 1.34780 * 119.99852 * 175.68065 * 12 11 10 14 14 O 1.21652 * 119.99806 * 359.97438 * 13 12 11 15 15 C 1.46985 * 119.99976 * 180.02562 * 13 12 11 16 16 C 1.35848 * 125.11862 * 179.71554 * 15 13 12 17 17 C 1.46094 * 106.06823 * 179.89702 * 16 15 13 18 18 C 1.39452 * 135.07560 * 180.08756 * 17 16 15 19 19 N 1.31675 * 120.07389 * 180.28160 * 18 17 16 20 20 C 1.32301 * 122.14433 * 359.97438 * 19 18 17 21 21 C 1.37753 * 121.58532 * 0.02562 * 20 19 18 22 22 C 1.39246 * 118.95410 * 359.97438 * 21 20 19 23 23 O 1.34279 * 134.37718 * 180.02562 * 22 21 20 24 24 C 1.53785 * 113.61435 * 63.84565 * 10 9 7 25 25 C 1.53777 * 87.08114 * 89.12078 * 24 10 9 26 26 C 1.53775 * 87.08290 * 25.43041 * 25 24 10 27 27 H 0.96992 * 120.00583 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00064 * 5.77459 * 9 7 2 29 29 H 1.09000 * 109.47145 * 71.32319 * 11 10 9 30 30 H 1.08995 * 109.46984 * 191.32069 * 11 10 9 31 31 H 0.97002 * 120.00306 * 355.67796 * 12 11 10 32 32 H 1.08008 * 126.96448 * 0.02562 * 16 15 13 33 33 H 1.08001 * 119.95994 * 0.27931 * 18 17 16 34 34 H 1.08000 * 119.21114 * 180.02562 * 20 19 18 35 35 H 1.07996 * 120.52675 * 180.02562 * 21 20 19 36 36 H 1.09000 * 113.61224 * 334.56852 * 24 10 9 37 37 H 1.09004 * 113.61540 * 203.66703 * 24 10 9 38 38 H 1.09000 * 113.61457 * 139.98089 * 25 24 10 39 39 H 1.09003 * 113.61522 * 270.88680 * 25 24 10 40 40 H 1.09009 * 113.61415 * 89.11484 * 26 25 24 41 41 H 1.09006 * 113.62062 * 219.93643 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1037 1.6967 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0527 -3.6535 0.1267 11 6 2.9291 -3.9617 -1.0891 12 7 2.1455 -3.7825 -2.3138 13 6 2.7369 -3.9147 -3.5177 14 8 3.9216 -4.1824 -3.5872 15 6 1.9508 -3.7344 -4.7465 16 6 2.4403 -3.8377 -6.0095 17 6 1.3118 -3.5853 -6.9024 18 6 1.1371 -3.5431 -8.2853 19 7 -0.0476 -3.2734 -8.7928 20 6 -1.1025 -3.0360 -8.0304 21 6 -1.0187 -3.0575 -6.6556 22 6 0.2082 -3.3370 -6.0594 23 8 0.6344 -3.4365 -4.7899 24 6 2.7851 -3.8109 1.4697 25 6 1.4905 -4.4387 2.0125 26 6 1.1662 -4.8323 0.5617 27 1 -0.4850 0.8399 0.0004 28 1 0.3594 -2.3902 -0.0847 29 1 3.7835 -3.2849 -1.1021 30 1 3.2820 -4.9912 -1.0310 31 1 1.2009 -3.5687 -2.2584 32 1 3.4571 -4.0631 -6.2956 33 1 1.9745 -3.7318 -8.9407 34 1 -2.0522 -2.8201 -8.4972 35 1 -1.8910 -2.8616 -6.0497 36 1 3.0413 -2.8621 1.9411 37 1 3.6243 -4.5055 1.4307 38 1 1.6609 -5.2922 2.6687 39 1 0.7958 -3.7119 2.4334 40 1 1.5627 -5.8062 0.2744 41 1 0.1150 -4.7094 0.3005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754989327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:20 Heat of formation + Delta-G solvation = 21.575474 kcal Electronic energy + Delta-G solvation = -25738.219654 eV Core-core repulsion = 22006.006651 eV Total energy + Delta-G solvation = -3732.213002 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.83811 -41.01202 -40.11744 -39.70833 -35.59844 -35.19588 -34.09682 -32.80055 -31.95204 -31.15407 -28.96064 -26.71413 -26.06425 -25.42195 -24.52210 -23.35362 -22.68041 -21.82805 -20.06932 -19.38147 -19.09026 -19.05060 -17.72619 -17.35803 -16.93417 -16.67834 -16.57631 -16.17541 -15.91960 -15.61782 -15.53576 -15.21341 -14.98688 -14.52179 -14.45904 -14.28851 -14.24740 -13.78538 -13.06896 -13.01481 -12.92122 -12.65617 -12.57320 -12.19258 -11.99842 -11.74471 -11.52196 -11.49768 -11.42709 -10.95764 -10.82964 -10.78992 -10.57199 -10.15559 -9.49868 -9.02412 -7.95837 -5.23215 -0.68545 0.10270 0.60667 1.20974 1.43500 1.44112 1.49477 1.93670 2.09557 2.52516 2.66140 3.18492 3.31965 3.36228 3.48009 3.73937 3.74443 3.77983 3.83459 3.94388 4.05112 4.13747 4.20585 4.27832 4.56247 4.62627 4.65829 4.78562 4.83193 4.86567 4.91294 4.97120 5.00570 5.12560 5.20471 5.31875 5.37668 5.43292 5.58282 5.69034 5.72531 6.27827 6.38133 6.82310 6.91428 7.34238 8.07173 8.30648 9.26337 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.012047 B = 0.003982 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.729136 B = 7030.257536 C = 8122.709796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.063 4.063 3 Si 0.954 3.046 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.222 4.222 8 H 0.066 0.934 9 N -0.705 5.705 10 C 0.156 3.844 11 C 0.124 3.876 12 N -0.683 5.683 13 C 0.591 3.409 14 O -0.553 6.553 15 C -0.045 4.045 16 C -0.087 4.087 17 C -0.213 4.213 18 C 0.180 3.820 19 N -0.509 5.509 20 C 0.125 3.875 21 C -0.168 4.168 22 C 0.081 3.919 23 O -0.191 6.191 24 C -0.146 4.146 25 C -0.121 4.121 26 C -0.129 4.129 27 H 0.249 0.751 28 H 0.377 0.623 29 H 0.045 0.955 30 H 0.086 0.914 31 H 0.409 0.591 32 H 0.194 0.806 33 H 0.197 0.803 34 H 0.205 0.795 35 H 0.164 0.836 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.108 0.892 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 -11.930 -11.437 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.256 4.256 3 Si 0.785 3.215 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.353 4.353 8 H 0.084 0.916 9 N -0.344 5.344 10 C 0.064 3.936 11 C -0.002 4.002 12 N -0.330 5.330 13 C 0.377 3.623 14 O -0.435 6.435 15 C -0.094 4.094 16 C -0.109 4.109 17 C -0.216 4.216 18 C 0.016 3.984 19 N -0.220 5.220 20 C -0.024 4.024 21 C -0.188 4.188 22 C 0.025 3.975 23 O -0.091 6.091 24 C -0.185 4.185 25 C -0.159 4.159 26 C -0.167 4.167 27 H 0.058 0.942 28 H 0.210 0.790 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.245 0.755 32 H 0.211 0.789 33 H 0.214 0.786 34 H 0.222 0.778 35 H 0.182 0.818 36 H 0.065 0.935 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.127 0.873 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.104 -11.894 -12.016 16.907 hybrid contribution -0.213 1.587 1.221 2.014 sum -0.108 -10.307 -10.794 14.925 Atomic orbital electron populations 1.69754 1.06070 1.25792 1.59548 1.25294 0.96109 1.00143 1.04054 0.85502 0.77441 0.80756 0.77804 1.21537 1.22247 1.20543 1.19232 0.90906 0.84823 1.40385 0.91605 1.42099 1.05597 0.99856 1.86881 1.21167 0.93624 0.87151 0.91656 1.21933 0.94271 1.00570 0.83431 1.45733 1.14460 1.67838 1.05011 1.16811 0.85679 0.77888 0.81940 1.90820 1.14577 1.51561 1.86543 1.22109 0.81745 1.09015 0.96542 1.22948 1.00346 0.98849 0.88734 1.21118 0.93600 1.09857 0.97070 1.22944 0.95889 0.89978 0.89591 1.67912 0.99722 1.14110 1.40206 1.23215 0.98703 0.92236 0.88283 1.21453 0.94898 1.05931 0.96489 1.20465 0.97043 0.98287 0.81679 1.83999 1.24095 1.73162 1.27835 1.23292 0.97758 1.00568 0.96913 1.22541 0.97044 1.00046 0.96239 1.23179 0.99469 0.97543 0.96495 0.94179 0.79012 0.93702 0.89599 0.75540 0.78855 0.78595 0.77801 0.81803 0.93454 0.88304 0.89528 0.92488 0.87346 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.30 13.07 21.65 0.28 -56.01 16 2 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 3 Si 0.95 45.96 29.55 68.60 2.03 47.98 16 4 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 7 C -0.22 -11.58 9.23 84.03 0.78 -10.81 16 8 H 0.07 3.45 7.83 -2.91 -0.02 3.43 16 9 N -0.70 -31.93 4.56 -300.95 -1.37 -33.31 16 10 C 0.16 5.43 0.91 4.13 0.00 5.43 16 11 C 0.12 4.23 5.06 86.38 0.44 4.67 16 12 N -0.68 -24.03 5.39 -466.79 -2.51 -26.54 16 13 C 0.59 21.01 7.80 86.54 0.67 21.69 16 14 O -0.55 -21.56 16.82 -4.20 -0.07 -21.63 16 15 C -0.04 -1.43 7.07 24.01 0.17 -1.26 16 16 C -0.09 -2.28 10.80 23.75 0.26 -2.02 16 17 C -0.21 -5.23 6.43 -20.25 -0.13 -5.36 16 18 C 0.18 3.51 11.28 85.01 0.96 4.47 16 19 N -0.51 -10.32 10.34 -195.04 -2.02 -12.34 16 20 C 0.12 2.17 11.13 84.51 0.94 3.11 16 21 C -0.17 -3.51 10.13 22.40 0.23 -3.28 16 22 C 0.08 2.21 7.48 23.21 0.17 2.38 16 23 O -0.19 -6.12 10.26 -9.63 -0.10 -6.22 16 24 C -0.15 -4.65 7.27 31.12 0.23 -4.42 16 25 C -0.12 -3.49 7.99 31.12 0.25 -3.24 16 26 C -0.13 -3.61 7.37 31.12 0.23 -3.38 16 27 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.38 18.50 7.89 -92.71 -0.73 17.76 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 2.51 7.94 -2.39 -0.02 2.49 16 31 H 0.41 14.70 7.82 -92.71 -0.72 13.98 16 32 H 0.19 4.12 8.06 -2.91 -0.02 4.10 16 33 H 0.20 2.41 8.06 -2.91 -0.02 2.38 16 34 H 0.21 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.05 1.79 7.79 -2.39 -0.02 1.77 16 37 H 0.10 2.57 8.10 -2.39 -0.02 2.55 16 38 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.11 2.41 7.96 -2.38 -0.02 2.39 16 41 H 0.06 1.80 8.10 -2.38 -0.02 1.78 16 Total: -1.00 -67.25 355.15 1.52 -65.73 By element: Atomic # 1 Polarization: 37.76 SS G_CDS: -0.38 Total: 37.38 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 5.66 Total: 4.96 kcal Atomic # 7 Polarization: -122.58 SS G_CDS: -5.62 Total: -128.20 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.17 Total: -27.85 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -67.25 1.52 -65.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754989327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.304 kcal (2) G-P(sol) polarization free energy of solvation -67.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds