Wall clock time and date at job start Tue Mar 31 2020 11:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35715 * 117.00014 * 2 1 4 4 C 1.39014 * 119.90952 * 0.02562 * 3 2 1 5 5 C 1.37685 * 120.08905 * 179.69887 * 4 3 2 6 6 C 1.39759 * 119.90593 * 0.57604 * 5 4 3 7 7 C 1.47575 * 120.08749 * 179.69538 * 6 5 4 8 8 O 1.21606 * 120.00054 * 179.72522 * 7 6 5 9 9 N 1.34778 * 119.99947 * 359.72845 * 7 6 5 10 10 C 1.40087 * 119.99926 * 179.97438 * 9 7 6 11 11 C 1.40426 * 125.97792 * 359.97438 * 10 9 7 12 12 C 1.35237 * 107.86928 * 179.97438 * 11 10 9 13 13 N 1.34964 * 107.86287 * 0.26438 * 12 11 10 14 14 C 1.46501 * 125.97659 * 179.73677 * 13 12 11 15 15 C 1.50695 * 109.47326 * 124.99643 * 14 13 12 16 16 H 1.07997 * 120.00282 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00102 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00172 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99826 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47163 * 90.00155 * 19 17 15 21 21 H 1.48504 * 109.46878 * 210.00070 * 19 17 15 22 22 H 1.48497 * 109.47118 * 330.00074 * 19 17 15 23 23 N 1.31233 * 125.97768 * 179.97438 * 10 9 7 24 24 C 1.39729 * 119.82388 * 359.42302 * 6 5 4 25 25 C 1.37722 * 119.90912 * 0.27591 * 24 6 5 26 26 C 1.50700 * 119.95406 * 179.97438 * 25 24 6 27 27 H 1.08996 * 109.47373 * 300.00065 * 1 2 3 28 28 H 1.08998 * 109.47373 * 60.00285 * 1 2 3 29 29 H 1.09000 * 109.47250 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.95580 * 359.97438 * 4 3 2 31 31 H 1.07993 * 120.04544 * 180.27080 * 5 4 3 32 32 H 0.96998 * 120.00051 * 359.97438 * 9 7 6 33 33 H 1.08003 * 126.06401 * 359.95697 * 11 10 9 34 34 H 1.08002 * 126.06518 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47097 * 245.00444 * 14 13 12 36 36 H 1.09002 * 109.46874 * 4.99800 * 14 13 12 37 37 H 0.97003 * 119.99741 * 180.02562 * 18 17 15 38 38 H 1.08002 * 120.04543 * 180.29814 * 24 6 5 39 39 H 1.08999 * 109.46879 * 90.00176 * 26 25 24 40 40 H 1.09002 * 109.46922 * 209.99938 * 26 25 24 41 41 H 1.08997 * 109.47298 * 329.99976 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2861 2.3739 0.0005 5 6 1.9074 3.6026 0.0068 6 6 3.3029 3.6779 0.0004 7 6 3.9729 4.9928 0.0003 8 8 5.1873 5.0565 -0.0002 9 7 3.2388 6.1231 0.0008 10 6 3.8748 7.3713 0.0013 11 6 5.2619 7.5905 0.0017 12 6 5.4709 8.9266 0.0015 13 7 4.2658 9.5341 0.0068 14 6 4.0310 10.9802 0.0139 15 6 3.1438 11.3508 -1.1464 16 1 2.7897 10.5857 -1.8214 17 6 2.7839 12.6667 -1.3463 18 7 2.0092 12.9901 -2.3587 19 14 3.3969 13.9902 -0.1792 20 1 4.6893 14.5277 -0.6752 21 1 2.3991 15.0878 -0.1077 22 1 3.5893 13.4074 1.1729 23 7 3.2786 8.5404 0.0013 24 6 4.0621 2.5049 0.0000 25 6 3.4330 1.2797 0.0000 26 6 4.2509 0.0139 -0.0011 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2078 2.3148 0.0005 31 1 1.3171 4.5069 0.0116 32 1 2.2702 6.0724 0.0009 33 1 6.0261 6.8273 0.0025 34 1 6.4317 9.4198 0.0021 35 1 3.5461 11.2650 0.9476 36 1 4.9832 11.5033 -0.0753 37 1 1.7564 13.9160 -2.4995 38 1 5.1408 2.5589 -0.0001 39 1 4.4488 -0.2916 1.0263 40 1 3.7001 -0.7740 -0.5148 41 1 5.1952 0.1919 -0.5156 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772127450.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:11 Heat of formation + Delta-G solvation = 41.340743 kcal Electronic energy + Delta-G solvation = -24550.855567 eV Core-core repulsion = 20819.499652 eV Total energy + Delta-G solvation = -3731.355916 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.98962 -40.50070 -39.30985 -37.40305 -34.89285 -33.52200 -33.02604 -31.37815 -30.57053 -29.40876 -28.10180 -27.44271 -26.77218 -24.12617 -22.49636 -22.20311 -21.32442 -20.17959 -19.50753 -18.41615 -17.38618 -17.11702 -16.82215 -16.25225 -16.22493 -15.43017 -15.17313 -14.99698 -14.47974 -14.31645 -14.23857 -13.83348 -13.60242 -13.51306 -13.14911 -12.86638 -12.52967 -12.46272 -12.42103 -12.31791 -12.14158 -12.02145 -11.45669 -11.19465 -11.14558 -10.77781 -10.65229 -10.08274 -10.00634 -9.68373 -9.52668 -9.22249 -8.77059 -8.53715 -8.19056 -7.52181 -6.23893 -4.26188 0.62357 0.98528 2.43986 2.70170 2.82443 2.85907 3.15348 3.22320 3.23921 3.42495 3.77206 3.83904 4.22574 4.30649 4.42186 4.57854 4.64771 4.73050 4.88998 4.91883 5.03885 5.05570 5.20008 5.25549 5.41753 5.44543 5.54677 5.68497 5.82492 5.88781 5.92381 6.07062 6.18859 6.34829 6.39247 6.43833 6.58502 6.66006 6.92338 7.24380 7.33999 7.56704 7.81086 8.22115 8.33093 8.55318 8.85994 9.31038 10.88798 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026619 B = 0.002340 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.644232 B =11960.492856 C =12775.180504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.151 3.849 4 C -0.212 4.212 5 C -0.048 4.048 6 C -0.162 4.162 7 C 0.569 3.431 8 O -0.517 6.517 9 N -0.627 5.627 10 C 0.261 3.739 11 C -0.283 4.283 12 C 0.051 3.949 13 N -0.319 5.319 14 C 0.232 3.768 15 C -0.534 4.534 16 H 0.086 0.914 17 C 0.076 3.924 18 N -0.888 5.888 19 Si 0.873 3.127 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.264 1.264 23 N -0.297 5.297 24 C -0.019 4.019 25 C -0.127 4.127 26 C -0.104 4.104 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.136 0.864 31 H 0.132 0.868 32 H 0.410 0.590 33 H 0.163 0.837 34 H 0.170 0.830 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.268 0.732 38 H 0.146 0.854 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.326 -25.258 6.436 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.105 3.895 4 C -0.230 4.230 5 C -0.067 4.067 6 C -0.166 4.166 7 C 0.357 3.643 8 O -0.392 6.392 9 N -0.274 5.274 10 C 0.007 3.993 11 C -0.314 4.314 12 C -0.098 4.098 13 N -0.100 5.100 14 C 0.113 3.887 15 C -0.573 4.573 16 H 0.104 0.896 17 C -0.128 4.128 18 N -0.525 5.525 19 Si 0.699 3.301 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.189 1.189 23 N -0.128 5.128 24 C -0.038 4.038 25 C -0.128 4.128 26 C -0.161 4.161 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.246 0.754 33 H 0.180 0.820 34 H 0.187 0.813 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.163 0.837 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.619 -24.506 6.340 25.321 hybrid contribution 0.012 0.739 0.409 0.845 sum -0.607 -23.767 6.749 24.715 Atomic orbital electron populations 1.23135 0.78007 1.04218 1.01743 1.86033 1.21652 1.26757 1.87909 1.19101 0.91850 0.84279 0.94300 1.21150 1.00393 0.91846 1.09657 1.21142 0.93304 0.97764 0.94502 1.19670 0.93542 0.92950 1.10410 1.18044 0.86803 0.83140 0.76356 1.90711 1.13298 1.86745 1.48484 1.42334 1.10277 1.02347 1.72479 1.19076 0.91619 0.85359 1.03229 1.21561 0.94809 0.95512 1.19483 1.22563 0.91442 0.93277 1.02534 1.48616 1.02011 1.06845 1.52557 1.20052 0.98548 0.70520 0.99597 1.21108 1.30511 0.94936 1.10697 0.89639 1.24838 0.94542 0.98146 0.95259 1.69875 1.34950 1.18792 1.28876 0.86905 0.79309 0.82113 0.81765 1.19693 1.20534 1.18862 1.77392 1.13880 0.93794 1.27686 1.20997 1.00748 0.89287 0.92772 1.19210 0.90513 0.96234 1.06802 1.20615 0.98946 0.93985 1.02534 0.92327 0.92292 0.88036 0.84644 0.85017 0.75375 0.82013 0.81320 0.94013 0.93299 0.92180 0.83663 0.91202 0.91077 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.57 9.52 -18.85 -0.18 -2.75 16 3 C 0.15 1.41 6.67 -39.02 -0.26 1.15 16 4 C -0.21 -1.83 9.01 -39.50 -0.36 -2.18 16 5 C -0.05 -0.47 9.53 -39.22 -0.37 -0.85 16 6 C -0.16 -1.95 5.87 -104.96 -0.62 -2.56 16 7 C 0.57 8.68 7.73 -12.45 -0.10 8.58 16 8 O -0.52 -9.19 13.46 5.27 0.07 -9.12 16 9 N -0.63 -10.05 5.40 -12.06 -0.07 -10.11 16 10 C 0.26 5.27 8.11 -154.44 -1.25 4.02 16 11 C -0.28 -5.55 9.60 -39.83 -0.38 -5.93 16 12 C 0.05 0.99 11.44 -17.24 -0.20 0.79 16 13 N -0.32 -7.25 3.67 -62.56 -0.23 -7.48 16 14 C 0.23 5.50 5.33 -5.20 -0.03 5.47 16 15 C -0.53 -15.09 9.79 -34.44 -0.34 -15.43 16 16 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 17 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 19 Si 0.87 20.11 27.47 -169.99 -4.67 15.44 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 23 N -0.30 -6.84 12.42 31.43 0.39 -6.45 16 24 C -0.02 -0.21 9.23 -39.21 -0.36 -0.57 16 25 C -0.13 -1.24 5.89 -104.54 -0.62 -1.85 16 26 C -0.10 -0.79 9.78 36.01 0.35 -0.44 16 27 H 0.06 0.23 7.65 -51.93 -0.40 -0.17 16 28 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 29 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.14 0.83 6.28 -52.49 -0.33 0.50 16 31 H 0.13 1.05 6.39 -52.49 -0.34 0.72 16 32 H 0.41 5.41 6.84 -40.82 -0.28 5.13 16 33 H 0.16 3.07 5.91 -52.48 -0.31 2.76 16 34 H 0.17 2.57 8.06 -52.49 -0.42 2.15 16 35 H 0.04 0.99 7.20 -51.93 -0.37 0.61 16 36 H 0.05 1.05 7.49 -51.93 -0.39 0.66 16 37 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.15 1.54 7.64 -52.49 -0.40 1.14 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.52 7.52 -51.93 -0.39 0.13 16 41 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 LS Contribution 349.29 15.07 5.26 5.26 Total: -1.00 -34.77 349.29 -7.16 -41.93 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.88 Total: 5.76 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -3.63 Total: -6.66 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.87 Total: -49.87 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -0.11 Total: -11.87 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.44 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.77 -7.16 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772127450.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.271 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds