Wall clock time and date at job start Tue Mar 31 2020 11:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35715 * 117.00014 * 2 1 4 4 C 1.39014 * 119.90952 * 0.02562 * 3 2 1 5 5 C 1.37685 * 120.08905 * 179.69887 * 4 3 2 6 6 C 1.39759 * 119.90593 * 0.57604 * 5 4 3 7 7 C 1.47575 * 120.08749 * 179.69538 * 6 5 4 8 8 O 1.21606 * 120.00054 * 179.72522 * 7 6 5 9 9 N 1.34778 * 119.99947 * 359.72845 * 7 6 5 10 10 C 1.40087 * 119.99926 * 179.97438 * 9 7 6 11 11 C 1.40426 * 125.97792 * 359.97438 * 10 9 7 12 12 C 1.35237 * 107.86928 * 179.97438 * 11 10 9 13 13 N 1.34964 * 107.86287 * 0.26438 * 12 11 10 14 14 C 1.46501 * 125.97659 * 179.73677 * 13 12 11 15 15 C 1.50695 * 109.47326 * 124.99643 * 14 13 12 16 16 H 1.07997 * 120.00282 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00102 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00172 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99826 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47163 * 90.00155 * 19 17 15 21 21 H 1.48504 * 109.46878 * 210.00070 * 19 17 15 22 22 H 1.48497 * 109.47118 * 330.00074 * 19 17 15 23 23 N 1.31233 * 125.97768 * 179.97438 * 10 9 7 24 24 C 1.39729 * 119.82388 * 359.42302 * 6 5 4 25 25 C 1.37722 * 119.90912 * 0.27591 * 24 6 5 26 26 C 1.50700 * 119.95406 * 179.97438 * 25 24 6 27 27 H 1.08996 * 109.47373 * 300.00065 * 1 2 3 28 28 H 1.08998 * 109.47373 * 60.00285 * 1 2 3 29 29 H 1.09000 * 109.47250 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.95580 * 359.97438 * 4 3 2 31 31 H 1.07993 * 120.04544 * 180.27080 * 5 4 3 32 32 H 0.96998 * 120.00051 * 359.97438 * 9 7 6 33 33 H 1.08003 * 126.06401 * 359.95697 * 11 10 9 34 34 H 1.08002 * 126.06518 * 179.97438 * 12 11 10 35 35 H 1.09001 * 109.47097 * 245.00444 * 14 13 12 36 36 H 1.09002 * 109.46874 * 4.99800 * 14 13 12 37 37 H 0.97003 * 119.99741 * 180.02562 * 18 17 15 38 38 H 1.08002 * 120.04543 * 180.29814 * 24 6 5 39 39 H 1.08999 * 109.46879 * 90.00176 * 26 25 24 40 40 H 1.09002 * 109.46922 * 209.99938 * 26 25 24 41 41 H 1.08997 * 109.47298 * 329.99976 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2861 2.3739 0.0005 5 6 1.9074 3.6026 0.0068 6 6 3.3029 3.6779 0.0004 7 6 3.9729 4.9928 0.0003 8 8 5.1873 5.0565 -0.0002 9 7 3.2388 6.1231 0.0008 10 6 3.8748 7.3713 0.0013 11 6 5.2619 7.5905 0.0017 12 6 5.4709 8.9266 0.0015 13 7 4.2658 9.5341 0.0068 14 6 4.0310 10.9802 0.0139 15 6 3.1438 11.3508 -1.1464 16 1 2.7897 10.5857 -1.8214 17 6 2.7839 12.6667 -1.3463 18 7 2.0092 12.9901 -2.3587 19 14 3.3969 13.9902 -0.1792 20 1 4.6893 14.5277 -0.6752 21 1 2.3991 15.0878 -0.1077 22 1 3.5893 13.4074 1.1729 23 7 3.2786 8.5404 0.0013 24 6 4.0621 2.5049 0.0000 25 6 3.4330 1.2797 0.0000 26 6 4.2509 0.0139 -0.0011 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 0.2078 2.3148 0.0005 31 1 1.3171 4.5069 0.0116 32 1 2.2702 6.0724 0.0009 33 1 6.0261 6.8273 0.0025 34 1 6.4317 9.4198 0.0021 35 1 3.5461 11.2650 0.9476 36 1 4.9832 11.5033 -0.0753 37 1 1.7564 13.9160 -2.4995 38 1 5.1408 2.5589 -0.0001 39 1 4.4488 -0.2916 1.0263 40 1 3.7001 -0.7740 -0.5148 41 1 5.1952 0.1919 -0.5156 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772127450.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:10 Heat of formation + Delta-G solvation = 18.423716 kcal Electronic energy + Delta-G solvation = -24551.849324 eV Core-core repulsion = 20819.499652 eV Total energy + Delta-G solvation = -3732.349673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.31754 -41.48313 -40.44774 -38.19796 -36.32945 -35.27014 -34.02545 -33.05493 -31.49030 -30.99131 -29.09896 -28.52573 -27.69340 -25.32798 -24.16041 -22.93226 -22.62675 -21.69580 -20.81150 -19.16076 -19.07032 -18.52571 -18.08618 -17.46465 -16.81487 -16.76910 -16.54687 -16.17395 -15.89763 -15.41973 -15.28618 -14.93974 -14.78706 -14.40536 -14.37866 -14.24437 -13.90085 -13.81391 -13.66500 -13.07331 -12.98352 -12.94880 -12.64579 -12.52539 -12.34214 -12.04529 -11.84995 -11.83221 -11.64585 -11.48268 -11.00348 -10.86977 -9.97413 -9.80158 -9.33151 -9.06416 -8.37605 -6.47955 -0.25812 0.24193 1.02279 1.28655 1.37051 1.41785 1.50298 1.55286 2.17046 2.25415 2.29013 2.32482 2.75978 2.94942 3.50259 3.62455 3.76213 3.94016 4.09527 4.13843 4.21352 4.39099 4.42252 4.46542 4.59627 4.62154 4.74679 4.77335 4.82340 4.85401 4.87487 4.89307 5.06676 5.12789 5.16635 5.24261 5.28118 5.36003 5.62325 5.84927 5.99701 6.18538 6.30157 6.40230 6.57876 6.93720 7.03504 7.14961 8.79502 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.026619 B = 0.002340 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.644232 B =11960.492856 C =12775.180504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.320 6.320 3 C 0.154 3.846 4 C -0.209 4.209 5 C -0.047 4.047 6 C -0.182 4.182 7 C 0.570 3.430 8 O -0.546 6.546 9 N -0.623 5.623 10 C 0.264 3.736 11 C -0.295 4.295 12 C 0.062 3.938 13 N -0.343 5.343 14 C 0.239 3.761 15 C -0.547 4.547 16 H 0.026 0.974 17 C 0.014 3.986 18 N -0.942 5.942 19 Si 0.956 3.044 20 H -0.253 1.253 21 H -0.281 1.281 22 H -0.239 1.239 23 N -0.346 5.346 24 C -0.025 4.025 25 C -0.136 4.136 26 C -0.102 4.102 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.164 0.836 31 H 0.146 0.854 32 H 0.421 0.579 33 H 0.169 0.831 34 H 0.213 0.787 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.272 0.728 38 H 0.142 0.858 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 -26.002 8.034 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.232 6.232 3 C 0.107 3.893 4 C -0.228 4.228 5 C -0.065 4.065 6 C -0.186 4.186 7 C 0.361 3.639 8 O -0.424 6.424 9 N -0.272 5.272 10 C 0.010 3.990 11 C -0.326 4.326 12 C -0.086 4.086 13 N -0.125 5.125 14 C 0.119 3.881 15 C -0.585 4.585 16 H 0.044 0.956 17 C -0.185 4.185 18 N -0.581 5.581 19 Si 0.777 3.223 20 H -0.177 1.177 21 H -0.206 1.206 22 H -0.162 1.162 23 N -0.177 5.177 24 C -0.044 4.044 25 C -0.137 4.137 26 C -0.159 4.159 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.181 0.819 31 H 0.164 0.836 32 H 0.260 0.740 33 H 0.186 0.814 34 H 0.230 0.770 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.160 0.840 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.178 -25.307 7.943 26.525 hybrid contribution -0.232 0.700 -0.167 0.756 sum -0.410 -24.607 7.777 25.810 Atomic orbital electron populations 1.23456 0.76030 1.05980 1.02655 1.86035 1.23687 1.26108 1.87385 1.19272 0.91940 0.85043 0.93069 1.21431 1.01801 0.90973 1.08566 1.21321 0.92441 0.99040 0.93740 1.19481 0.94530 0.91212 1.13363 1.18601 0.86573 0.83770 0.74999 1.90673 1.14631 1.87184 1.49885 1.42459 1.11017 1.01287 1.72476 1.19454 0.92264 0.86022 1.01280 1.21782 0.94746 0.96046 1.20031 1.23267 0.91955 0.93238 1.00105 1.48529 1.03010 1.06513 1.54451 1.19908 0.98989 0.71735 0.97451 1.21226 1.31692 0.94065 1.11533 0.95569 1.25933 0.94347 1.01007 0.97208 1.70053 1.36836 1.19753 1.31455 0.85609 0.79085 0.77791 0.79849 1.17727 1.20624 1.16219 1.77309 1.15333 0.94864 1.30189 1.21024 1.00695 0.89572 0.93104 1.19426 0.91258 0.96406 1.06563 1.20645 0.99006 0.93055 1.03176 0.91288 0.91423 0.86040 0.81886 0.83598 0.74047 0.81382 0.77050 0.93575 0.89954 0.91873 0.84031 0.90434 0.90736 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.20 16 2 O -0.32 -4.55 9.52 -90.36 -0.86 -5.41 16 3 C 0.15 2.60 6.67 22.63 0.15 2.76 16 4 C -0.21 -3.18 9.01 22.33 0.20 -2.98 16 5 C -0.05 -0.86 9.53 22.51 0.21 -0.65 16 6 C -0.18 -4.35 5.87 -20.09 -0.12 -4.47 16 7 C 0.57 17.65 7.73 86.71 0.67 18.32 16 8 O -0.55 -19.76 13.46 -4.05 -0.05 -19.81 16 9 N -0.62 -20.31 5.40 -310.33 -1.67 -21.99 16 10 C 0.26 10.86 8.11 133.35 1.08 11.95 16 11 C -0.30 -11.54 9.60 22.11 0.21 -11.33 16 12 C 0.06 2.34 11.44 83.52 0.96 3.29 16 13 N -0.34 -15.57 3.67 -351.85 -1.29 -16.86 16 14 C 0.24 11.10 5.33 85.63 0.46 11.56 16 15 C -0.55 -31.71 9.79 25.60 0.25 -31.46 16 16 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 17 C 0.01 0.78 5.47 84.66 0.46 1.25 16 18 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 19 Si 0.96 40.70 27.47 68.60 1.88 42.58 16 20 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.24 -9.17 6.54 99.48 0.65 -8.52 16 23 N -0.35 -16.36 12.42 -54.48 -0.68 -17.04 16 24 C -0.03 -0.54 9.23 22.51 0.21 -0.34 16 25 C -0.14 -2.51 5.89 -19.81 -0.12 -2.62 16 26 C -0.10 -1.43 9.78 71.24 0.70 -0.73 16 27 H 0.07 0.33 7.65 -2.39 -0.02 0.32 16 28 H 0.07 0.35 7.65 -2.39 -0.02 0.33 16 29 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.16 1.50 6.28 -2.91 -0.02 1.48 16 31 H 0.15 2.17 6.39 -2.91 -0.02 2.15 16 32 H 0.42 11.29 6.84 -92.71 -0.63 10.66 16 33 H 0.17 6.35 5.91 -2.91 -0.02 6.33 16 34 H 0.21 5.77 8.06 -2.91 -0.02 5.74 16 35 H 0.05 2.10 7.20 -2.39 -0.02 2.08 16 36 H 0.08 3.27 7.49 -2.39 -0.02 3.26 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.14 3.08 7.64 -2.91 -0.02 3.06 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 0.99 7.52 -2.39 -0.02 0.97 16 41 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 Total: -1.00 -79.15 349.29 4.45 -74.70 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.39 Total: 25.96 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 6.44 Total: -4.26 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -3.34 Total: -113.75 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.91 Total: -25.23 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 1.88 Total: 42.58 kcal Total: -79.15 4.45 -74.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772127450.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.122 kcal (2) G-P(sol) polarization free energy of solvation -79.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds