Wall clock time and date at job start Tue Mar 31 2020 10:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30844 * 125.90115 * 2 1 4 4 N 1.40082 * 108.20616 * 180.25818 * 3 2 1 5 5 H 0.96997 * 126.03710 * 179.69386 * 4 3 2 6 6 C 1.34954 * 107.92374 * 359.72289 * 4 3 2 7 7 C 1.35313 * 107.74771 * 0.02562 * 6 4 3 8 8 C 1.50695 * 126.04012 * 180.02562 * 7 6 4 9 9 N 1.46500 * 109.47119 * 4.83163 * 8 7 6 10 10 C 1.46501 * 119.99781 * 273.82029 * 9 8 7 11 11 C 1.34774 * 120.00247 * 93.82854 * 9 8 7 12 12 O 1.21590 * 119.99824 * 355.01122 * 11 9 8 13 13 C 1.47532 * 120.00031 * 175.01899 * 11 9 8 14 14 C 1.39663 * 120.19940 * 316.18568 * 13 11 9 15 15 C 1.37829 * 119.92291 * 179.97438 * 14 13 11 16 16 C 1.38571 * 120.32248 * 0.02562 * 15 14 13 17 17 C 1.38033 * 120.40264 * 0.02562 * 16 15 14 18 18 C 1.38835 * 120.06871 * 359.96101 * 17 16 15 19 19 O 1.35519 * 120.15862 * 180.02562 * 18 17 16 20 20 C 1.34815 * 116.99994 * 354.73528 * 19 18 17 21 21 H 1.08001 * 120.00009 * 5.14311 * 20 19 18 22 22 C 1.38705 * 119.99990 * 185.13772 * 20 19 18 23 23 N 1.31518 * 119.99766 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 119.99890 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47140 * 59.99974 * 24 22 20 26 26 H 1.48499 * 109.47266 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47316 * 300.00145 * 24 22 20 28 28 H 1.09006 * 109.46913 * 275.07077 * 1 2 3 29 29 H 1.09003 * 109.46930 * 35.06346 * 1 2 3 30 30 H 1.08993 * 109.47007 * 155.06905 * 1 2 3 31 31 H 1.07997 * 126.12399 * 179.97438 * 6 4 3 32 32 H 1.08999 * 109.47051 * 244.83268 * 8 7 6 33 33 H 1.09000 * 109.47287 * 124.82885 * 8 7 6 34 34 H 1.08994 * 109.47757 * 273.15932 * 10 9 8 35 35 H 1.09009 * 109.47140 * 33.15982 * 10 9 8 36 36 H 1.09003 * 109.47078 * 153.15589 * 10 9 8 37 37 H 1.08006 * 120.04055 * 0.02562 * 14 13 11 38 38 H 1.07997 * 119.83604 * 180.28846 * 15 14 13 39 39 H 1.07998 * 119.79851 * 179.97438 * 16 15 14 40 40 H 1.07994 * 119.96638 * 179.97438 * 17 16 15 41 41 H 0.96998 * 119.99581 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0060 5 1 4.3908 1.2079 -0.0115 6 6 3.6142 -0.7154 -0.0034 7 6 2.3271 -1.1330 0.0035 8 6 1.8599 -2.5657 0.0090 9 7 3.0175 -3.4564 0.1222 10 6 3.7433 -3.8708 -1.0810 11 6 3.4146 -3.8948 1.3332 12 8 2.8701 -3.4804 2.3383 13 6 4.5100 -4.8774 1.4393 14 6 4.5537 -5.9764 0.5785 15 6 5.5800 -6.8905 0.6823 16 6 6.5700 -6.7255 1.6377 17 6 6.5393 -5.6448 2.4959 18 6 5.5134 -4.7138 2.4058 19 8 5.4817 -3.6519 3.2471 20 6 6.4140 -3.6141 4.2203 21 1 7.1916 -4.3629 4.2525 22 6 6.3745 -2.6134 5.1800 23 7 5.4273 -1.7018 5.1408 24 14 7.6666 -2.5606 6.5278 25 1 9.0131 -2.4195 5.9176 26 1 7.4043 -1.4028 7.4200 27 1 7.6102 -3.8172 7.3172 28 1 -0.3633 0.0908 1.0237 29 1 -0.3633 0.8412 -0.5904 30 1 -0.3633 -0.9318 -0.4332 31 1 4.4890 -1.3486 -0.0070 32 1 1.3275 -2.7778 -0.9182 33 1 1.1930 -2.7272 0.8560 34 1 3.2704 -4.7572 -1.5035 35 1 3.7227 -3.0639 -1.8137 36 1 4.7769 -4.0993 -0.8212 37 1 3.7847 -6.1093 -0.1681 38 1 5.6150 -7.7373 0.0129 39 1 7.3700 -7.4472 1.7118 40 1 7.3143 -5.5233 3.2382 41 1 5.3999 -1.0019 5.8118 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824050737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:05 Heat of formation + Delta-G solvation = 50.121517 kcal Electronic energy + Delta-G solvation = -26377.273709 eV Core-core repulsion = 22646.298556 eV Total energy + Delta-G solvation = -3730.975153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.04824 -39.71139 -38.21589 -36.38405 -35.08791 -32.87496 -32.37120 -31.32415 -29.80500 -28.97929 -27.77410 -26.84825 -25.62508 -25.27602 -22.62728 -21.60686 -20.69625 -19.41212 -18.88777 -18.07688 -17.69705 -17.12465 -16.24122 -15.57050 -14.94408 -14.82532 -14.64659 -14.20383 -14.07746 -13.95527 -13.73091 -13.62488 -13.00913 -12.69400 -12.67309 -12.61812 -12.43324 -12.35807 -12.24683 -12.00062 -11.76823 -11.68400 -11.31575 -11.10851 -10.90312 -10.77016 -10.51195 -10.48800 -9.60608 -9.12795 -8.98108 -8.89166 -8.27115 -8.24310 -8.14982 -7.34988 -6.47758 -4.08561 1.77676 2.16343 2.28077 2.94767 3.08842 3.11648 3.12348 3.14121 3.42569 3.62557 3.90936 4.50567 4.88290 5.00951 5.08712 5.14446 5.20899 5.37882 5.42964 5.48472 5.54292 5.61040 5.69822 5.71386 5.79123 5.87358 5.93247 5.97933 6.00348 6.11394 6.13888 6.33234 6.55037 6.63723 6.83157 6.91207 7.02056 7.05242 7.22928 7.26846 7.51639 7.66312 7.86445 7.90676 7.96196 8.92708 8.97709 9.62137 10.66795 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010615 B = 0.005330 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.254270 B = 5252.215309 C = 7251.055765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.082 3.918 3 N -0.302 5.302 4 N -0.478 5.478 5 H 0.438 0.562 6 C 0.087 3.913 7 C -0.250 4.250 8 C 0.201 3.799 9 N -0.624 5.624 10 C 0.081 3.919 11 C 0.569 3.431 12 O -0.505 6.505 13 C -0.220 4.220 14 C -0.041 4.041 15 C -0.227 4.227 16 C -0.054 4.054 17 C -0.237 4.237 18 C 0.187 3.813 19 O -0.144 6.144 20 C -0.401 4.401 21 H 0.093 0.907 22 C 0.045 3.955 23 N -0.840 5.840 24 Si 0.940 3.060 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.268 1.268 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.170 0.830 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 -2.573 -13.402 13.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.086 4.086 3 N -0.127 5.127 4 N -0.185 5.185 5 H 0.281 0.719 6 C -0.061 4.061 7 C -0.262 4.262 8 C 0.077 3.923 9 N -0.360 5.360 10 C -0.062 4.062 11 C 0.358 3.642 12 O -0.378 6.378 13 C -0.224 4.224 14 C -0.059 4.059 15 C -0.246 4.246 16 C -0.072 4.072 17 C -0.256 4.256 18 C 0.129 3.871 19 O -0.044 6.044 20 C -0.477 4.477 21 H 0.111 0.889 22 C -0.163 4.163 23 N -0.472 5.472 24 Si 0.764 3.236 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.193 1.193 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.187 0.813 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.148 0.852 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.409 -0.640 -12.648 13.115 hybrid contribution 1.444 -0.666 0.708 1.741 sum -1.964 -1.306 -11.940 12.170 Atomic orbital electron populations 1.20157 0.86897 1.02873 1.03093 1.22107 0.96764 0.90123 0.99592 1.77156 0.86856 1.22652 1.26001 1.46098 1.07040 1.05585 1.59762 0.71885 1.22254 0.99450 0.84785 0.99608 1.20360 0.92280 0.96597 1.16953 1.19461 0.87531 0.83415 1.01906 1.47690 1.31925 1.49603 1.06781 1.21858 0.97758 0.99478 0.87124 1.18263 0.82775 0.80774 0.82355 1.90843 1.55000 1.56849 1.35119 1.18762 0.99156 1.00814 1.03707 1.20859 0.96831 0.92602 0.95647 1.20483 0.98404 1.02035 1.03702 1.20894 0.96928 0.95782 0.93632 1.21136 1.01927 0.97866 1.04711 1.19220 0.91563 0.87042 0.89246 1.84033 1.49685 1.34922 1.35717 1.21360 1.06877 1.14396 1.05064 0.88926 1.25355 0.97929 0.95098 0.97876 1.70085 1.30430 1.12813 1.33872 0.85804 0.79554 0.78505 0.79710 1.19438 1.20199 1.19301 0.90434 0.91140 0.90558 0.81294 0.90620 0.89311 0.93038 0.92002 0.90350 0.86459 0.87240 0.87236 0.85153 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.30 36.00 0.37 -0.45 16 2 C 0.08 1.27 7.22 -82.40 -0.59 0.68 16 3 N -0.30 -5.08 12.70 33.67 0.43 -4.66 16 4 N -0.48 -7.42 7.36 30.45 0.22 -7.20 16 5 H 0.44 5.44 8.96 -182.61 -1.64 3.81 16 6 C 0.09 1.42 11.16 -17.22 -0.19 1.23 16 7 C -0.25 -4.04 6.07 -105.06 -0.64 -4.67 16 8 C 0.20 2.98 5.53 -5.20 -0.03 2.96 16 9 N -0.62 -10.07 2.12 -184.20 -0.39 -10.46 16 10 C 0.08 0.97 8.66 59.85 0.52 1.49 16 11 C 0.57 12.19 7.04 -12.47 -0.09 12.11 16 12 O -0.50 -13.48 15.88 -8.29 -0.13 -13.61 16 13 C -0.22 -4.60 4.88 -104.81 -0.51 -5.11 16 14 C -0.04 -0.68 7.78 -39.20 -0.31 -0.98 16 15 C -0.23 -3.57 10.02 -39.61 -0.40 -3.97 16 16 C -0.05 -0.92 10.03 -39.53 -0.40 -1.31 16 17 C -0.24 -4.95 9.16 -39.44 -0.36 -5.31 16 18 C 0.19 4.50 6.63 -38.60 -0.26 4.25 16 19 O -0.14 -4.14 8.65 -12.77 -0.11 -4.25 16 20 C -0.40 -11.18 9.49 30.90 0.29 -10.89 16 21 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 22 C 0.04 1.23 5.49 -17.51 -0.10 1.14 16 23 N -0.84 -25.21 13.67 55.48 0.76 -24.45 16 24 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.70 7.84 -51.93 -0.41 0.30 16 31 H 0.17 2.73 7.57 -52.49 -0.40 2.33 16 32 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.09 1.47 7.38 -51.93 -0.38 1.09 16 34 H 0.05 0.51 7.20 -51.93 -0.37 0.13 16 35 H 0.06 0.63 8.10 -51.92 -0.42 0.21 16 36 H 0.08 1.02 6.15 -51.93 -0.32 0.70 16 37 H 0.12 1.59 6.35 -52.48 -0.33 1.25 16 38 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.13 2.70 5.63 -52.49 -0.30 2.41 16 41 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -36.27 349.91 -7.74 -44.01 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.09 Total: 8.73 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.68 Total: -8.84 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 1.02 Total: -46.76 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.24 Total: -17.86 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.27 -7.74 -44.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824050737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.131 kcal (2) G-P(sol) polarization free energy of solvation -36.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds