Wall clock time and date at job start Tue Mar 31 2020 10:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30844 * 125.90115 * 2 1 4 4 N 1.40082 * 108.20616 * 180.25818 * 3 2 1 5 5 H 0.96997 * 126.03710 * 179.69386 * 4 3 2 6 6 C 1.34954 * 107.92374 * 359.72289 * 4 3 2 7 7 C 1.35313 * 107.74771 * 0.02562 * 6 4 3 8 8 C 1.50695 * 126.04012 * 180.02562 * 7 6 4 9 9 N 1.46500 * 109.47119 * 4.83163 * 8 7 6 10 10 C 1.46501 * 119.99781 * 273.82029 * 9 8 7 11 11 C 1.34774 * 120.00247 * 93.82854 * 9 8 7 12 12 O 1.21590 * 119.99824 * 355.01122 * 11 9 8 13 13 C 1.47532 * 120.00031 * 175.01899 * 11 9 8 14 14 C 1.39663 * 120.19940 * 316.18568 * 13 11 9 15 15 C 1.37829 * 119.92291 * 179.97438 * 14 13 11 16 16 C 1.38571 * 120.32248 * 0.02562 * 15 14 13 17 17 C 1.38033 * 120.40264 * 0.02562 * 16 15 14 18 18 C 1.38835 * 120.06871 * 359.96101 * 17 16 15 19 19 O 1.35519 * 120.15862 * 180.02562 * 18 17 16 20 20 C 1.34815 * 116.99994 * 354.73528 * 19 18 17 21 21 H 1.08001 * 120.00009 * 5.14311 * 20 19 18 22 22 C 1.38705 * 119.99990 * 185.13772 * 20 19 18 23 23 N 1.31518 * 119.99766 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 119.99890 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47140 * 59.99974 * 24 22 20 26 26 H 1.48499 * 109.47266 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47316 * 300.00145 * 24 22 20 28 28 H 1.09006 * 109.46913 * 275.07077 * 1 2 3 29 29 H 1.09003 * 109.46930 * 35.06346 * 1 2 3 30 30 H 1.08993 * 109.47007 * 155.06905 * 1 2 3 31 31 H 1.07997 * 126.12399 * 179.97438 * 6 4 3 32 32 H 1.08999 * 109.47051 * 244.83268 * 8 7 6 33 33 H 1.09000 * 109.47287 * 124.82885 * 8 7 6 34 34 H 1.08994 * 109.47757 * 273.15932 * 10 9 8 35 35 H 1.09009 * 109.47140 * 33.15982 * 10 9 8 36 36 H 1.09003 * 109.47078 * 153.15589 * 10 9 8 37 37 H 1.08006 * 120.04055 * 0.02562 * 14 13 11 38 38 H 1.07997 * 119.83604 * 180.28846 * 15 14 13 39 39 H 1.07998 * 119.79851 * 179.97438 * 16 15 14 40 40 H 1.07994 * 119.96638 * 179.97438 * 17 16 15 41 41 H 0.96998 * 119.99581 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0060 5 1 4.3908 1.2079 -0.0115 6 6 3.6142 -0.7154 -0.0034 7 6 2.3271 -1.1330 0.0035 8 6 1.8599 -2.5657 0.0090 9 7 3.0175 -3.4564 0.1222 10 6 3.7433 -3.8708 -1.0810 11 6 3.4146 -3.8948 1.3332 12 8 2.8701 -3.4804 2.3383 13 6 4.5100 -4.8774 1.4393 14 6 4.5537 -5.9764 0.5785 15 6 5.5800 -6.8905 0.6823 16 6 6.5700 -6.7255 1.6377 17 6 6.5393 -5.6448 2.4959 18 6 5.5134 -4.7138 2.4058 19 8 5.4817 -3.6519 3.2471 20 6 6.4140 -3.6141 4.2203 21 1 7.1916 -4.3629 4.2525 22 6 6.3745 -2.6134 5.1800 23 7 5.4273 -1.7018 5.1408 24 14 7.6666 -2.5606 6.5278 25 1 9.0131 -2.4195 5.9176 26 1 7.4043 -1.4028 7.4200 27 1 7.6102 -3.8172 7.3172 28 1 -0.3633 0.0908 1.0237 29 1 -0.3633 0.8412 -0.5904 30 1 -0.3633 -0.9318 -0.4332 31 1 4.4890 -1.3486 -0.0070 32 1 1.3275 -2.7778 -0.9182 33 1 1.1930 -2.7272 0.8560 34 1 3.2704 -4.7572 -1.5035 35 1 3.7227 -3.0639 -1.8137 36 1 4.7769 -4.0993 -0.8212 37 1 3.7847 -6.1093 -0.1681 38 1 5.6150 -7.7373 0.0129 39 1 7.3700 -7.4472 1.7118 40 1 7.3143 -5.5233 3.2382 41 1 5.3999 -1.0019 5.8118 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824050737.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:04 Heat of formation + Delta-G solvation = 24.984424 kcal Electronic energy + Delta-G solvation = -26378.363735 eV Core-core repulsion = 22646.298556 eV Total energy + Delta-G solvation = -3732.065179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.30253 -41.29682 -39.86425 -38.02494 -36.58326 -34.33754 -34.04253 -32.70743 -31.17994 -30.57386 -28.84354 -28.00626 -27.43902 -26.77054 -24.07237 -23.20658 -22.03014 -20.69770 -20.28551 -19.87979 -18.98038 -18.72305 -17.82620 -17.06661 -16.50595 -16.38017 -15.98517 -15.71145 -15.52704 -15.40691 -15.25129 -15.13272 -14.39023 -14.25076 -13.99046 -13.77700 -13.64558 -13.57005 -13.49385 -13.43038 -13.14630 -12.93386 -12.85110 -12.61184 -12.45402 -12.30293 -12.13710 -11.74896 -11.41519 -10.83677 -10.64314 -10.36300 -9.76381 -9.59421 -9.40518 -9.02033 -8.47112 -6.17355 0.25683 0.74461 0.88795 1.30020 1.42370 1.47351 1.70884 1.89412 1.99103 2.13689 2.21314 2.84567 3.17033 3.47387 3.75105 3.82859 3.90221 4.13432 4.28076 4.30033 4.36152 4.40654 4.52297 4.58297 4.65136 4.71273 4.78944 4.83855 4.96636 4.98264 5.02220 5.06407 5.08270 5.11797 5.17988 5.53938 5.60836 5.66212 5.73509 5.80451 5.94841 6.19863 6.33859 6.50561 6.67340 6.94106 7.41234 7.77809 8.73541 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010615 B = 0.005330 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.254270 B = 5252.215309 C = 7251.055765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.075 3.925 3 N -0.326 5.326 4 N -0.478 5.478 5 H 0.447 0.553 6 C 0.070 3.930 7 C -0.261 4.261 8 C 0.201 3.799 9 N -0.610 5.610 10 C 0.074 3.926 11 C 0.562 3.438 12 O -0.575 6.575 13 C -0.231 4.231 14 C -0.031 4.031 15 C -0.195 4.195 16 C -0.046 4.046 17 C -0.255 4.255 18 C 0.146 3.854 19 O -0.207 6.207 20 C -0.419 4.419 21 H 0.106 0.894 22 C -0.022 4.022 23 N -0.911 5.911 24 Si 1.018 2.982 25 H -0.251 1.251 26 H -0.276 1.276 27 H -0.256 1.256 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.165 0.835 32 H 0.125 0.875 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.151 0.849 40 H 0.121 0.879 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.538 -5.910 -16.671 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 N -0.151 5.151 4 N -0.186 5.186 5 H 0.292 0.708 6 C -0.077 4.077 7 C -0.273 4.273 8 C 0.077 3.923 9 N -0.343 5.343 10 C -0.068 4.068 11 C 0.352 3.648 12 O -0.454 6.454 13 C -0.235 4.235 14 C -0.049 4.049 15 C -0.213 4.213 16 C -0.064 4.064 17 C -0.274 4.274 18 C 0.093 3.907 19 O -0.111 6.111 20 C -0.495 4.495 21 H 0.123 0.877 22 C -0.221 4.221 23 N -0.548 5.548 24 Si 0.837 3.163 25 H -0.175 1.175 26 H -0.201 1.201 27 H -0.180 1.180 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.121 0.879 31 H 0.182 0.818 32 H 0.143 0.857 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.177 0.823 38 H 0.181 0.819 39 H 0.169 0.831 40 H 0.138 0.862 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.011 -4.036 -16.035 16.807 hybrid contribution 1.271 0.057 1.333 1.842 sum -1.740 -3.979 -14.702 15.330 Atomic orbital electron populations 1.20329 0.84087 1.05036 1.03482 1.22770 0.98608 0.89442 0.98407 1.77111 0.87352 1.23649 1.26990 1.46150 1.07311 1.05510 1.59657 0.70821 1.22336 0.99732 0.85282 1.00391 1.20646 0.92283 0.97566 1.16812 1.19659 0.86883 0.82441 1.03289 1.47682 1.31849 1.48308 1.06447 1.22176 0.97035 1.01989 0.85576 1.18558 0.82450 0.80749 0.83034 1.90809 1.57413 1.59355 1.37861 1.19159 0.98247 1.02239 1.03878 1.21345 0.98026 0.90556 0.95009 1.21169 0.95950 1.01975 1.02205 1.21395 0.98235 0.94602 0.92172 1.21273 1.01202 0.98932 1.05980 1.19965 0.93700 0.87464 0.89619 1.84027 1.51408 1.37908 1.37798 1.21879 1.07273 1.14836 1.05536 0.87665 1.26673 1.00400 0.94464 1.00513 1.70283 1.34017 1.14708 1.35769 0.84671 0.76841 0.78726 0.76092 1.17533 1.20110 1.18034 0.90716 0.89557 0.87933 0.81771 0.85696 0.91521 0.89196 0.89703 0.91369 0.82301 0.81913 0.83114 0.86155 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.54 10.30 71.23 0.73 -0.80 16 2 C 0.07 2.34 7.22 43.10 0.31 2.65 16 3 N -0.33 -11.19 12.70 -47.38 -0.60 -11.79 16 4 N -0.48 -15.48 7.36 -57.59 -0.42 -15.91 16 5 H 0.45 11.85 8.96 -213.34 -1.91 9.94 16 6 C 0.07 2.40 11.16 83.54 0.93 3.34 16 7 C -0.26 -8.47 6.07 -20.15 -0.12 -8.59 16 8 C 0.20 5.74 5.53 85.63 0.47 6.22 16 9 N -0.61 -18.96 2.12 -854.94 -1.81 -20.77 16 10 C 0.07 1.50 8.66 127.77 1.11 2.60 16 11 C 0.56 24.69 7.04 86.69 0.61 25.30 16 12 O -0.58 -32.87 15.88 8.98 0.14 -32.73 16 13 C -0.23 -9.61 4.88 -19.99 -0.10 -9.71 16 14 C -0.03 -0.90 7.78 22.52 0.18 -0.72 16 15 C -0.19 -4.92 10.02 22.25 0.22 -4.69 16 16 C -0.05 -1.37 10.03 22.30 0.22 -1.15 16 17 C -0.25 -10.56 9.16 22.36 0.20 -10.36 16 18 C 0.15 7.28 6.63 22.91 0.15 7.44 16 19 O -0.21 -12.88 8.65 -7.08 -0.06 -12.94 16 20 C -0.42 -25.01 9.49 67.93 0.64 -24.36 16 21 H 0.11 5.63 5.20 -2.91 -0.02 5.62 16 22 C -0.02 -1.30 5.49 84.85 0.47 -0.83 16 23 N -0.91 -59.44 13.67 21.62 0.30 -59.15 16 24 Si 1.02 44.22 29.55 68.60 2.03 46.25 16 25 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 26 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 27 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 28 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.10 1.64 7.84 -2.39 -0.02 1.62 16 31 H 0.17 5.63 7.57 -2.91 -0.02 5.60 16 32 H 0.13 2.34 8.10 -2.39 -0.02 2.32 16 33 H 0.07 2.24 7.38 -2.39 -0.02 2.23 16 34 H 0.09 1.21 7.20 -2.39 -0.02 1.19 16 35 H 0.08 1.40 8.10 -2.38 -0.02 1.38 16 36 H 0.07 1.56 6.15 -2.39 -0.01 1.55 16 37 H 0.16 3.27 6.35 -2.91 -0.02 3.25 16 38 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 40 H 0.12 5.11 5.63 -2.91 -0.02 5.09 16 41 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 Total: -1.00 -91.16 349.91 4.77 -86.39 By element: Atomic # 1 Polarization: 35.16 SS G_CDS: -0.83 Total: 34.33 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 6.04 Total: -13.68 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -2.54 Total: -107.62 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: 0.08 Total: -45.67 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -91.16 4.77 -86.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824050737.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.375 kcal (2) G-P(sol) polarization free energy of solvation -91.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds