Wall clock time and date at job start Tue Mar 31 2020 11:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31126 * 126.55559 * 2 1 4 4 C 1.34492 * 105.61837 * 180.12222 * 3 2 1 5 5 C 1.50702 * 126.28810 * 179.90096 * 4 3 2 6 6 N 1.46494 * 109.47098 * 269.71196 * 5 4 3 7 7 C 1.46499 * 120.00299 * 269.99727 * 6 5 4 8 8 C 1.34779 * 120.00013 * 90.00481 * 6 5 4 9 9 O 1.21290 * 119.99762 * 2.63485 * 8 6 5 10 10 C 1.50697 * 120.00531 * 182.63626 * 8 6 5 11 11 H 1.09006 * 109.46817 * 315.81289 * 10 8 6 12 12 C 1.50694 * 109.47096 * 75.80873 * 10 8 6 13 13 H 1.08006 * 119.99986 * 28.32220 * 12 10 8 14 14 C 1.37878 * 120.00177 * 208.31733 * 12 10 8 15 15 N 1.31514 * 119.99999 * 1.68362 * 14 12 10 16 16 Si 1.86805 * 120.00261 * 181.67604 * 14 12 10 17 17 H 1.48497 * 109.47039 * 270.00487 * 16 14 12 18 18 H 1.48496 * 109.46944 * 30.00238 * 16 14 12 19 19 H 1.48496 * 109.47067 * 150.00318 * 16 14 12 20 20 C 1.50697 * 109.47428 * 195.81205 * 10 8 6 21 21 C 1.38233 * 119.99966 * 292.63431 * 20 10 8 22 22 C 1.38234 * 120.00108 * 179.78796 * 21 20 10 23 23 C 1.38238 * 119.99732 * 0.44002 * 22 21 20 24 24 C 1.38235 * 120.00123 * 359.80890 * 23 22 21 25 25 C 1.38230 * 120.00053 * 359.97438 * 24 23 22 26 26 N 1.29949 * 107.42459 * 359.64022 * 4 3 2 27 27 O 1.21303 * 110.24956 * 0.22728 * 26 4 3 28 28 H 1.08993 * 109.47187 * 180.25400 * 1 2 3 29 29 H 1.08998 * 109.46755 * 300.25200 * 1 2 3 30 30 H 1.08993 * 109.46977 * 60.24879 * 1 2 3 31 31 H 1.09003 * 109.46500 * 149.71372 * 5 4 3 32 32 H 1.08997 * 109.47132 * 29.71733 * 5 4 3 33 33 H 1.08998 * 109.47608 * 265.22460 * 7 6 5 34 34 H 1.08997 * 109.46975 * 25.23323 * 7 6 5 35 35 H 1.09001 * 109.46865 * 145.22809 * 7 6 5 36 36 H 0.96996 * 119.99613 * 354.58676 * 15 14 12 37 37 H 1.08001 * 120.00192 * 359.97438 * 21 20 10 38 38 H 1.07994 * 120.00423 * 180.27580 * 22 21 20 39 39 H 1.08005 * 119.99942 * 179.83400 * 23 22 21 40 40 H 1.08002 * 120.00075 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.00411 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0533 0.0000 4 6 3.5442 0.5727 -0.0028 5 6 4.8113 1.3885 -0.0060 6 7 5.2224 1.6465 -1.3882 7 6 6.1148 0.7089 -2.0742 8 6 4.7797 2.7467 -2.0287 9 8 4.0798 3.5475 -1.4456 10 6 5.1542 2.9819 -3.4693 11 1 6.2139 2.7678 -3.6088 12 6 4.3380 2.0761 -4.3549 13 1 3.3572 1.7526 -4.0389 14 6 4.8433 1.6602 -5.5685 15 7 6.0508 2.0271 -5.9385 16 14 3.8129 0.5755 -6.6871 17 1 4.0740 -0.8516 -6.3704 18 1 2.3734 0.8738 -6.4768 19 1 4.1720 0.8422 -8.1031 20 6 4.8801 4.4187 -3.8316 21 6 3.5790 4.8830 -3.8807 22 6 3.3278 6.2022 -4.2087 23 6 4.3772 7.0547 -4.4964 24 6 5.6780 6.5892 -4.4523 25 6 5.9295 5.2712 -4.1200 26 7 3.4646 -0.7243 0.0035 27 8 2.3029 -1.0737 0.0052 28 1 -0.3633 -1.0276 0.0046 29 1 -0.3633 0.5177 0.8877 30 1 -0.3633 0.5099 -0.8922 31 1 5.5983 0.8391 0.5107 32 1 4.6348 2.3358 0.5035 33 1 7.1454 1.0496 -1.9752 34 1 6.0146 -0.2805 -1.6280 35 1 5.8482 0.6600 -3.1300 36 1 6.5552 2.6529 -5.3955 37 1 2.7589 4.2159 -3.6599 38 1 2.3116 6.5660 -4.2428 39 1 4.1808 8.0847 -4.7553 40 1 6.4979 7.2552 -4.6775 41 1 6.9458 4.9073 -4.0859 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362425166.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:37 Heat of formation + Delta-G solvation = 59.086352 kcal Electronic energy + Delta-G solvation = -26611.605568 eV Core-core repulsion = 22881.019160 eV Total energy + Delta-G solvation = -3730.586408 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.40335 -39.51378 -37.99711 -35.98059 -34.83552 -34.09863 -33.20795 -30.93784 -30.04316 -29.12568 -28.48503 -26.96735 -25.60961 -23.78578 -23.24975 -21.73671 -21.63421 -20.62376 -18.76718 -17.99255 -17.33412 -17.21326 -16.12097 -16.02692 -15.39369 -15.21587 -14.59988 -14.25424 -14.06674 -13.87181 -13.52120 -13.49080 -13.05307 -12.91464 -12.63450 -12.43679 -12.36066 -12.20215 -11.97987 -11.85199 -11.61687 -11.57346 -11.31222 -10.92921 -10.88039 -10.79560 -10.30961 -10.24629 -10.14670 -9.80710 -9.02636 -8.84587 -8.60056 -8.27076 -8.04347 -7.70082 -6.60439 -4.35508 1.28699 2.23121 2.29139 2.37713 2.94546 3.30503 3.33986 3.46299 3.51260 3.72917 3.88197 4.21120 4.35969 4.71704 4.97615 5.10834 5.13232 5.18663 5.37595 5.51826 5.63138 5.64889 5.68849 5.70006 5.80633 5.91785 5.98772 6.05115 6.08583 6.20187 6.37465 6.43987 6.51153 6.58395 6.83308 6.95376 7.01618 7.26431 7.34428 7.56701 7.80650 7.86904 8.02370 8.16890 8.34593 8.57475 9.01420 9.33412 10.77357 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.011333 B = 0.005272 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.129344 B = 5310.002892 C = 6161.797246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.166 3.834 3 N -0.459 5.459 4 C 0.165 3.835 5 C 0.205 3.795 6 N -0.613 5.613 7 C 0.075 3.925 8 C 0.535 3.465 9 O -0.543 6.543 10 C 0.048 3.952 11 H 0.065 0.935 12 C -0.582 4.582 13 H 0.054 0.946 14 C 0.033 3.967 15 N -0.894 5.894 16 Si 1.068 2.932 17 H -0.285 1.285 18 H -0.287 1.287 19 H -0.281 1.281 20 C -0.028 4.028 21 C -0.070 4.070 22 C -0.134 4.134 23 C -0.144 4.144 24 C -0.131 4.131 25 C -0.128 4.128 26 N -0.381 5.381 27 O 0.072 5.928 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.273 0.727 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 -2.567 9.226 10.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.055 4.055 3 N -0.193 5.193 4 C -0.110 4.110 5 C 0.080 3.920 6 N -0.348 5.348 7 C -0.067 4.067 8 C 0.326 3.674 9 O -0.419 6.419 10 C 0.026 3.974 11 H 0.083 0.917 12 C -0.620 4.620 13 H 0.072 0.928 14 C -0.174 4.174 15 N -0.528 5.528 16 Si 0.895 3.105 17 H -0.212 1.212 18 H -0.213 1.213 19 H -0.207 1.207 20 C -0.029 4.029 21 C -0.088 4.088 22 C -0.152 4.152 23 C -0.162 4.162 24 C -0.149 4.149 25 C -0.146 4.146 26 N -0.089 5.089 27 O 0.013 5.987 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.128 0.872 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.626 -3.043 8.099 9.810 hybrid contribution -0.201 0.669 1.286 1.463 sum -4.827 -2.374 9.384 10.817 Atomic orbital electron populations 1.20328 0.80507 1.05174 1.05602 1.28874 0.98947 0.80861 0.96820 1.71979 1.00316 1.28391 1.18615 1.26496 0.96152 0.88201 1.00156 1.19497 0.87765 0.98592 0.86191 1.47798 1.49864 1.25030 1.12110 1.21970 0.92317 0.91489 1.00959 1.21483 0.77934 0.78855 0.89134 1.90610 1.37740 1.45261 1.68316 1.18161 0.99779 0.91054 0.88374 0.91745 1.21473 1.04282 1.31862 1.04353 0.92814 1.25827 0.96875 0.98209 0.96440 1.70782 1.09838 1.30992 1.41191 0.83546 0.74967 0.75670 0.76313 1.21176 1.21257 1.20654 1.20153 0.92804 0.95099 0.94847 1.20840 0.96959 0.94371 0.96668 1.21010 0.98131 0.94387 1.01699 1.20840 0.93128 0.98837 1.03412 1.20876 0.96267 0.95707 1.02038 1.20977 0.98423 0.93500 1.01716 1.74586 0.97387 1.15885 1.21072 1.85249 1.11593 1.35978 1.65921 0.88777 0.88108 0.87936 0.88446 0.87213 0.93349 0.92241 0.87740 0.91533 0.86772 0.87370 0.87495 0.87380 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.01 0.38 -0.10 16 2 C 0.17 2.34 8.51 -13.05 -0.11 2.23 16 3 N -0.46 -8.27 11.55 -9.86 -0.11 -8.39 16 4 C 0.16 2.95 7.80 -156.37 -1.22 1.73 16 5 C 0.21 3.48 6.03 -5.20 -0.03 3.45 16 6 N -0.61 -11.99 2.86 -182.96 -0.52 -12.52 16 7 C 0.08 1.35 9.85 59.85 0.59 1.94 16 8 C 0.53 12.25 6.83 -10.99 -0.08 12.17 16 9 O -0.54 -13.48 14.82 5.55 0.08 -13.40 16 10 C 0.05 1.14 1.22 -94.08 -0.12 1.02 16 11 H 0.06 1.56 5.63 -51.93 -0.29 1.26 16 12 C -0.58 -15.00 6.08 -34.44 -0.21 -15.21 16 13 H 0.05 1.47 7.81 -52.48 -0.41 1.06 16 14 C 0.03 0.87 5.42 -17.82 -0.10 0.77 16 15 N -0.89 -24.34 13.61 55.43 0.75 -23.59 16 16 Si 1.07 23.93 29.90 -169.99 -5.08 18.85 16 17 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.03 -0.66 4.46 -104.62 -0.47 -1.13 16 21 C -0.07 -1.62 8.07 -39.58 -0.32 -1.94 16 22 C -0.13 -2.69 10.05 -39.58 -0.40 -3.09 16 23 C -0.14 -2.68 10.05 -39.58 -0.40 -3.08 16 24 C -0.13 -2.50 10.05 -39.59 -0.40 -2.90 16 25 C -0.13 -2.75 9.67 -39.58 -0.38 -3.13 16 26 N -0.38 -6.53 12.16 30.90 0.38 -6.15 16 27 O 0.07 1.09 11.31 18.09 0.20 1.29 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 32 H 0.11 1.91 7.39 -51.93 -0.38 1.52 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 35 H 0.10 2.21 5.68 -51.93 -0.29 1.91 16 36 H 0.27 7.35 6.65 -40.82 -0.27 7.08 16 37 H 0.11 2.77 7.83 -52.49 -0.41 2.36 16 38 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 40 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.11 2.19 7.96 -52.49 -0.42 1.77 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -32.63 353.92 -7.29 -39.92 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.07 Total: 5.90 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -3.25 Total: -7.25 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.49 Total: -50.65 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.29 Total: -12.11 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.08 Total: 18.85 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.63 -7.29 -39.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362425166.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.008 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds