Wall clock time and date at job start Tue Mar 31 2020 11:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47230 * 2 1 4 4 H 1.08996 * 109.47368 * 185.17733 * 3 2 1 5 5 C 1.50696 * 109.47299 * 305.17978 * 3 2 1 6 6 H 1.07992 * 120.00092 * 119.99498 * 5 3 2 7 7 C 1.37885 * 119.99741 * 300.00005 * 5 3 2 8 8 N 1.31506 * 119.99886 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00039 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47123 * 89.99865 * 9 7 5 11 11 H 1.48496 * 109.47081 * 210.00380 * 9 7 5 12 12 H 1.48501 * 109.47227 * 330.00136 * 9 7 5 13 13 N 1.46902 * 109.47044 * 65.17831 * 3 2 1 14 14 C 1.46906 * 111.00234 * 85.90110 * 13 3 2 15 15 C 1.50697 * 109.47147 * 174.80542 * 14 13 3 16 16 C 1.38253 * 119.92226 * 90.00404 * 15 14 13 17 17 C 1.38246 * 120.14174 * 180.02562 * 16 15 14 18 18 C 1.38569 * 120.00130 * 359.97438 * 17 16 15 19 19 O 1.35993 * 120.07138 * 179.97438 * 18 17 16 20 20 C 1.42896 * 117.00202 * 0.02980 * 19 18 17 21 21 C 1.39153 * 119.85264 * 0.02562 * 18 17 16 22 22 O 1.35996 * 120.07425 * 180.02562 * 21 18 17 23 23 C 1.42890 * 117.00355 * 179.97438 * 22 21 18 24 24 F 1.39909 * 109.47152 * 59.99729 * 23 22 21 25 25 F 1.39903 * 109.47279 * 300.00206 * 23 22 21 26 26 C 1.38242 * 119.92613 * 270.25674 * 15 14 13 27 27 H 1.08995 * 109.46915 * 294.85564 * 1 2 3 28 28 H 1.08997 * 109.46902 * 54.85806 * 1 2 3 29 29 H 1.08998 * 109.47056 * 174.85618 * 1 2 3 30 30 H 1.08999 * 109.47354 * 239.99656 * 2 1 3 31 31 H 1.09007 * 109.46900 * 120.00060 * 2 1 3 32 32 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 33 33 H 1.00906 * 110.99857 * 321.94998 * 13 3 2 34 34 H 1.09008 * 109.46617 * 54.80613 * 14 13 3 35 35 H 1.09001 * 109.46742 * 294.81193 * 14 13 3 36 36 H 1.07995 * 119.92826 * 359.97438 * 16 15 14 37 37 H 1.07999 * 119.99772 * 179.97438 * 17 16 15 38 38 H 1.08997 * 109.47648 * 59.99599 * 20 19 18 39 39 H 1.08997 * 109.47112 * 179.97438 * 20 19 18 40 40 H 1.09003 * 109.46914 * 299.99581 * 20 19 18 41 41 H 1.09002 * 109.47629 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.00180 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0927 5 6 1.4358 2.1890 -1.1613 6 1 0.8267 3.0628 -0.9833 7 6 1.6605 1.7562 -2.4510 8 7 1.1328 2.4073 -3.4644 9 14 2.7145 0.2450 -2.7588 10 1 1.8541 -0.9653 -2.7672 11 1 3.3969 0.3764 -4.0711 12 1 3.7305 0.1226 -1.6827 13 7 1.6551 2.0979 1.2571 14 6 2.6440 1.8364 2.3115 15 6 2.2844 2.6253 3.5442 16 6 1.4573 2.0688 4.5022 17 6 1.1241 2.7886 5.6344 18 6 1.6198 4.0705 5.8114 19 8 1.2925 4.7800 6.9244 20 6 0.4333 4.1419 7.8712 21 6 2.4522 4.6304 4.8471 22 8 2.9416 5.8880 5.0164 23 6 3.7903 6.3980 3.9862 24 9 3.0889 6.4274 2.7760 25 9 4.9122 5.5726 3.8549 26 6 2.7781 3.9056 3.7120 27 1 -0.3633 0.4319 0.9324 28 1 -0.3633 0.5915 -0.8403 29 1 -0.3633 -1.0235 -0.0921 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.2911 2.1031 -4.3717 33 1 0.7325 1.8101 1.5472 34 1 3.6330 2.1356 1.9643 35 1 2.6488 0.7727 2.5493 36 1 1.0701 1.0700 4.3652 37 1 0.4775 2.3518 6.3811 38 1 0.9064 3.2295 8.2342 39 1 0.2525 4.8151 8.7092 40 1 -0.5143 3.8942 7.3927 41 1 4.1098 7.4075 4.2451 42 1 3.4203 4.3396 2.9600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:18 Heat of formation + Delta-G solvation = -147.289513 kcal Electronic energy + Delta-G solvation = -26943.218089 eV Core-core repulsion = 22752.993365 eV Total energy + Delta-G solvation = -4190.224724 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.30715 -47.29538 -40.53409 -38.40634 -37.71660 -36.33114 -32.82090 -31.53500 -30.50359 -29.71254 -27.67863 -26.73203 -26.09129 -24.22977 -23.17688 -22.49526 -21.28717 -19.54549 -18.89964 -18.41419 -17.87490 -17.51453 -16.60863 -16.29692 -15.92603 -15.45552 -15.10186 -14.98766 -14.44063 -14.35299 -13.97905 -13.89780 -13.77394 -13.59802 -13.51058 -13.23935 -12.98801 -12.72294 -12.56915 -12.40423 -12.04803 -12.00241 -11.80718 -11.52786 -11.08288 -11.01988 -10.90243 -10.72753 -10.48273 -10.37604 -9.85929 -9.37698 -9.11857 -8.72952 -8.51286 -7.95201 -7.38479 -6.01311 -3.96936 1.27357 1.37651 2.52247 3.12539 3.27442 3.36816 3.39635 3.47223 3.66187 4.25277 4.43041 4.62924 4.70630 4.84418 4.86095 4.97257 5.01369 5.21118 5.27780 5.28605 5.38705 5.43180 5.58629 5.75542 5.93417 5.99226 6.00406 6.14730 6.19803 6.24362 6.49103 6.54184 6.70833 6.74210 6.79408 6.82932 7.00808 7.28835 7.35449 7.74212 7.92085 8.33686 8.72965 9.11212 9.61448 11.12105 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.003791 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.061279 B = 7383.978882 C = 8479.800249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.159 4.159 3 C 0.185 3.815 4 H 0.033 0.967 5 C -0.489 4.489 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.901 5.901 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.665 5.665 14 C 0.095 3.905 15 C -0.064 4.064 16 C -0.100 4.100 17 C -0.177 4.177 18 C 0.105 3.895 19 O -0.310 6.310 20 C 0.028 3.972 21 C 0.073 3.927 22 O -0.314 6.314 23 C 0.409 3.591 24 F -0.192 7.192 25 F -0.201 7.201 26 C -0.129 4.129 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.262 0.738 33 H 0.333 0.667 34 H 0.076 0.924 35 H 0.031 0.969 36 H 0.127 0.873 37 H 0.135 0.865 38 H 0.053 0.947 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.178 0.822 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.420 3.127 21.827 22.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.198 4.198 3 C 0.076 3.924 4 H 0.051 0.949 5 C -0.527 4.527 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.539 5.539 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.195 1.195 13 N -0.296 5.296 14 C -0.035 4.035 15 C -0.065 4.065 16 C -0.118 4.118 17 C -0.196 4.196 18 C 0.060 3.940 19 O -0.224 6.224 20 C -0.068 4.068 21 C 0.029 3.971 22 O -0.232 6.232 23 C 0.319 3.681 24 F -0.173 7.173 25 F -0.182 7.182 26 C -0.148 4.148 27 H 0.059 0.941 28 H 0.100 0.900 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.152 0.848 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.074 0.926 41 H 0.195 0.805 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.718 4.046 21.614 22.157 hybrid contribution 0.313 -2.206 -0.344 2.254 sum 3.030 1.840 21.270 21.564 Atomic orbital electron populations 1.21649 0.95764 0.99576 1.02514 1.22505 0.97297 1.01050 0.98925 1.19738 0.96041 0.88208 0.88392 0.94869 1.20892 1.31112 1.12696 0.88017 0.89989 1.24889 0.95552 0.96591 0.96163 1.69877 1.45037 1.40246 0.98787 0.86978 0.81174 0.83913 0.76853 1.20679 1.22474 1.19550 1.60667 1.03788 1.62737 1.02362 1.20902 0.97841 0.95421 0.89293 1.19710 0.96824 0.93999 0.95951 1.20858 0.97702 1.00092 0.93183 1.20978 1.04486 0.93440 1.00682 1.18100 0.97341 0.91193 0.87414 1.86134 1.64961 1.42131 1.29171 1.23041 0.93213 0.98965 0.91543 1.18037 0.99134 0.84692 0.95190 1.86651 1.62445 1.29450 1.44651 1.23337 0.75467 0.93669 0.75659 1.93166 1.79389 1.97006 1.47765 1.93094 1.53460 1.76138 1.95557 1.21316 1.02506 0.95316 0.95625 0.94091 0.89980 0.95121 0.93287 0.94903 0.92759 0.84809 0.90580 0.95143 0.85525 0.84755 0.92798 0.88363 0.92640 0.80524 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.40 37.16 0.35 -2.38 16 2 C -0.16 -3.35 5.22 -26.73 -0.14 -3.49 16 3 C 0.19 4.30 1.93 -68.87 -0.13 4.16 16 4 H 0.03 0.81 6.76 -51.93 -0.35 0.46 16 5 C -0.49 -13.54 7.83 -34.44 -0.27 -13.81 16 6 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 7 C 0.07 1.97 5.42 -17.82 -0.10 1.87 16 8 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 9 Si 0.88 21.83 24.32 -169.99 -4.13 17.70 16 10 H -0.28 -6.77 6.92 56.52 0.39 -6.38 16 11 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 12 H -0.27 -6.44 6.53 56.52 0.37 -6.07 16 13 N -0.66 -13.53 6.19 -109.22 -0.68 -14.20 16 14 C 0.09 1.62 5.63 -4.97 -0.03 1.59 16 15 C -0.06 -1.00 5.44 -104.62 -0.57 -1.56 16 16 C -0.10 -1.32 9.69 -39.57 -0.38 -1.70 16 17 C -0.18 -2.15 9.04 -39.46 -0.36 -2.51 16 18 C 0.10 1.45 6.70 -39.12 -0.26 1.19 16 19 O -0.31 -3.91 10.28 -34.22 -0.35 -4.26 16 20 C 0.03 0.22 9.81 101.05 0.99 1.21 16 21 C 0.07 1.10 6.50 -39.12 -0.25 0.85 16 22 O -0.31 -4.29 10.22 -34.22 -0.35 -4.64 16 23 C 0.41 4.52 5.98 101.05 0.60 5.13 16 24 F -0.19 -2.72 15.57 2.25 0.04 -2.68 16 25 F -0.20 -2.51 15.60 2.25 0.04 -2.48 16 26 C -0.13 -2.05 7.91 -39.46 -0.31 -2.36 16 27 H 0.04 0.72 6.63 -51.93 -0.34 0.38 16 28 H 0.08 1.88 6.85 -51.93 -0.36 1.52 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.11 3.42 -51.93 -0.18 0.93 16 31 H 0.03 0.61 7.50 -51.93 -0.39 0.22 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.33 6.44 6.69 -39.29 -0.26 6.18 16 34 H 0.08 1.33 7.87 -51.92 -0.41 0.93 16 35 H 0.03 0.48 7.48 -51.93 -0.39 0.09 16 36 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 38 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 41 H 0.18 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.14 2.38 5.10 -52.49 -0.27 2.11 16 LS Contribution 341.97 15.07 5.15 5.15 Total: -1.00 -32.86 341.97 -5.74 -38.59 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -5.36 Total: 5.29 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -0.86 Total: -11.82 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.10 Total: -40.85 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: -0.70 Total: -8.91 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.07 Total: -5.16 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.13 Total: 17.70 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.86 -5.74 -38.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.696 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds