Wall clock time and date at job start Tue Mar 31 2020 11:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47230 * 2 1 4 4 H 1.08996 * 109.47368 * 185.17733 * 3 2 1 5 5 C 1.50696 * 109.47299 * 305.17978 * 3 2 1 6 6 H 1.07992 * 120.00092 * 119.99498 * 5 3 2 7 7 C 1.37885 * 119.99741 * 300.00005 * 5 3 2 8 8 N 1.31506 * 119.99886 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00039 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47123 * 89.99865 * 9 7 5 11 11 H 1.48496 * 109.47081 * 210.00380 * 9 7 5 12 12 H 1.48501 * 109.47227 * 330.00136 * 9 7 5 13 13 N 1.46902 * 109.47044 * 65.17831 * 3 2 1 14 14 C 1.46906 * 111.00234 * 85.90110 * 13 3 2 15 15 C 1.50697 * 109.47147 * 174.80542 * 14 13 3 16 16 C 1.38253 * 119.92226 * 90.00404 * 15 14 13 17 17 C 1.38246 * 120.14174 * 180.02562 * 16 15 14 18 18 C 1.38569 * 120.00130 * 359.97438 * 17 16 15 19 19 O 1.35993 * 120.07138 * 179.97438 * 18 17 16 20 20 C 1.42896 * 117.00202 * 0.02980 * 19 18 17 21 21 C 1.39153 * 119.85264 * 0.02562 * 18 17 16 22 22 O 1.35996 * 120.07425 * 180.02562 * 21 18 17 23 23 C 1.42890 * 117.00355 * 179.97438 * 22 21 18 24 24 F 1.39909 * 109.47152 * 59.99729 * 23 22 21 25 25 F 1.39903 * 109.47279 * 300.00206 * 23 22 21 26 26 C 1.38242 * 119.92613 * 270.25674 * 15 14 13 27 27 H 1.08995 * 109.46915 * 294.85564 * 1 2 3 28 28 H 1.08997 * 109.46902 * 54.85806 * 1 2 3 29 29 H 1.08998 * 109.47056 * 174.85618 * 1 2 3 30 30 H 1.08999 * 109.47354 * 239.99656 * 2 1 3 31 31 H 1.09007 * 109.46900 * 120.00060 * 2 1 3 32 32 H 0.97000 * 120.00295 * 179.97438 * 8 7 5 33 33 H 1.00906 * 110.99857 * 321.94998 * 13 3 2 34 34 H 1.09008 * 109.46617 * 54.80613 * 14 13 3 35 35 H 1.09001 * 109.46742 * 294.81193 * 14 13 3 36 36 H 1.07995 * 119.92826 * 359.97438 * 16 15 14 37 37 H 1.07999 * 119.99772 * 179.97438 * 17 16 15 38 38 H 1.08997 * 109.47648 * 59.99599 * 20 19 18 39 39 H 1.08997 * 109.47112 * 179.97438 * 20 19 18 40 40 H 1.09003 * 109.46914 * 299.99581 * 20 19 18 41 41 H 1.09002 * 109.47629 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.00180 * 0.02562 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0927 5 6 1.4358 2.1890 -1.1613 6 1 0.8267 3.0628 -0.9833 7 6 1.6605 1.7562 -2.4510 8 7 1.1328 2.4073 -3.4644 9 14 2.7145 0.2450 -2.7588 10 1 1.8541 -0.9653 -2.7672 11 1 3.3969 0.3764 -4.0711 12 1 3.7305 0.1226 -1.6827 13 7 1.6551 2.0979 1.2571 14 6 2.6440 1.8364 2.3115 15 6 2.2844 2.6253 3.5442 16 6 1.4573 2.0688 4.5022 17 6 1.1241 2.7886 5.6344 18 6 1.6198 4.0705 5.8114 19 8 1.2925 4.7800 6.9244 20 6 0.4333 4.1419 7.8712 21 6 2.4522 4.6304 4.8471 22 8 2.9416 5.8880 5.0164 23 6 3.7903 6.3980 3.9862 24 9 3.0889 6.4274 2.7760 25 9 4.9122 5.5726 3.8549 26 6 2.7781 3.9056 3.7120 27 1 -0.3633 0.4319 0.9324 28 1 -0.3633 0.5915 -0.8403 29 1 -0.3633 -1.0235 -0.0921 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.2911 2.1031 -4.3717 33 1 0.7325 1.8101 1.5472 34 1 3.6330 2.1356 1.9643 35 1 2.6488 0.7727 2.5493 36 1 1.0701 1.0700 4.3652 37 1 0.4775 2.3518 6.3811 38 1 0.9064 3.2295 8.2342 39 1 0.2525 4.8151 8.7092 40 1 -0.5143 3.8942 7.3927 41 1 4.1098 7.4075 4.2451 42 1 3.4203 4.3396 2.9600 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:18 Heat of formation + Delta-G solvation = -170.620885 kcal Electronic energy + Delta-G solvation = -26944.229813 eV Core-core repulsion = 22752.993365 eV Total energy + Delta-G solvation = -4191.236448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.27842 -48.28936 -41.52881 -39.34317 -39.04175 -37.74524 -34.58384 -33.29407 -31.52349 -30.97689 -28.93629 -28.05006 -27.08203 -25.58681 -24.97202 -23.48749 -22.42014 -21.35613 -19.91479 -19.35967 -18.85169 -18.57376 -18.34453 -17.43647 -17.07438 -16.76246 -16.51602 -16.35921 -15.57411 -15.43408 -15.35620 -14.95310 -14.91990 -14.83592 -14.74522 -14.60908 -14.44850 -14.15258 -14.04406 -13.60865 -13.25115 -13.11407 -12.90953 -12.75978 -12.61110 -12.47053 -12.23661 -12.13452 -11.90954 -11.88922 -11.63997 -11.25753 -11.09913 -10.66590 -9.79007 -9.09023 -8.88055 -8.22509 -6.22134 0.22063 0.29863 1.30148 1.35672 1.44615 1.63739 2.29400 2.34660 2.57398 2.61253 3.12126 3.47555 3.63298 3.71364 3.75526 3.89776 3.96858 4.14442 4.27792 4.32641 4.36462 4.44570 4.45524 4.46680 4.49314 4.61771 4.74545 4.77937 4.92449 5.03549 5.09013 5.17814 5.20612 5.30227 5.48109 5.60908 5.62031 5.73793 5.74981 6.05084 6.43738 6.71534 6.77525 6.83437 7.40784 8.95019 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.003791 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.061279 B = 7383.978882 C = 8479.800249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.156 4.156 3 C 0.190 3.810 4 H 0.024 0.976 5 C -0.486 4.486 6 H 0.032 0.968 7 C 0.013 3.987 8 N -0.952 5.952 9 Si 0.943 3.057 10 H -0.264 1.264 11 H -0.302 1.302 12 H -0.252 1.252 13 N -0.680 5.680 14 C 0.101 3.899 15 C -0.084 4.084 16 C -0.094 4.094 17 C -0.168 4.168 18 C 0.101 3.899 19 O -0.328 6.328 20 C 0.016 3.984 21 C 0.052 3.948 22 O -0.322 6.322 23 C 0.402 3.598 24 F -0.214 7.214 25 F -0.211 7.211 26 C -0.146 4.146 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.263 0.737 33 H 0.339 0.661 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.152 0.848 37 H 0.171 0.829 38 H 0.070 0.930 39 H 0.119 0.881 40 H 0.066 0.934 41 H 0.236 0.764 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.380 1.080 24.786 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.194 4.194 3 C 0.081 3.919 4 H 0.042 0.958 5 C -0.524 4.524 6 H 0.051 0.949 7 C -0.184 4.184 8 N -0.593 5.593 9 Si 0.771 3.229 10 H -0.190 1.190 11 H -0.230 1.230 12 H -0.176 1.176 13 N -0.311 5.311 14 C -0.028 4.028 15 C -0.085 4.085 16 C -0.113 4.113 17 C -0.186 4.186 18 C 0.055 3.945 19 O -0.242 6.242 20 C -0.078 4.078 21 C 0.009 3.991 22 O -0.240 6.240 23 C 0.313 3.687 24 F -0.196 7.196 25 F -0.193 7.193 26 C -0.165 4.165 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.159 0.841 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.170 0.830 37 H 0.188 0.812 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.084 0.916 41 H 0.251 0.749 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.675 1.995 24.619 24.844 hybrid contribution 0.254 -1.425 -1.107 1.823 sum 2.929 0.570 23.511 23.700 Atomic orbital electron populations 1.21571 0.94964 1.00628 1.01882 1.22410 0.98020 0.99020 0.99999 1.19486 0.94903 0.89457 0.88091 0.95848 1.21094 1.29886 1.11357 0.90106 0.94939 1.25683 0.96999 0.99855 0.95817 1.70042 1.47350 1.42589 0.99319 0.85942 0.79849 0.80358 0.76749 1.19044 1.23041 1.17622 1.60466 1.04949 1.63180 1.02549 1.20842 0.96125 0.96970 0.88836 1.19647 0.98599 0.93975 0.96251 1.21120 0.96482 1.01089 0.92610 1.21357 1.03873 0.92526 1.00859 1.18345 0.96757 0.91792 0.87588 1.86119 1.65757 1.43104 1.29263 1.23404 0.93011 1.00177 0.91201 1.18264 1.00014 0.85278 0.95561 1.86632 1.62845 1.28989 1.45505 1.24312 0.74546 0.95462 0.74425 1.93117 1.80027 1.97111 1.49369 1.93064 1.53855 1.76874 1.95547 1.21241 1.03260 0.96030 0.96006 0.92061 0.94010 0.92484 0.94445 0.91328 0.92812 0.84129 0.91985 0.92842 0.83018 0.81167 0.91168 0.86296 0.91577 0.74858 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 9.40 71.98 0.68 -4.31 16 2 C -0.16 -6.16 5.22 30.59 0.16 -6.00 16 3 C 0.19 8.75 1.93 44.17 0.09 8.83 16 4 H 0.02 1.13 6.76 -2.39 -0.02 1.11 16 5 C -0.49 -27.83 7.83 25.60 0.20 -27.63 16 6 H 0.03 2.13 8.06 -2.91 -0.02 2.10 16 7 C 0.01 0.75 5.42 84.66 0.46 1.21 16 8 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 9 Si 0.94 45.18 24.32 68.60 1.67 46.84 16 10 H -0.26 -11.95 6.92 99.48 0.69 -11.26 16 11 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 12 H -0.25 -11.22 6.53 99.48 0.65 -10.57 16 13 N -0.68 -27.43 6.19 -499.45 -3.09 -30.52 16 14 C 0.10 3.33 5.63 85.55 0.48 3.82 16 15 C -0.08 -2.53 5.44 -19.86 -0.11 -2.64 16 16 C -0.09 -2.23 9.69 22.28 0.22 -2.02 16 17 C -0.17 -3.55 9.04 22.35 0.20 -3.35 16 18 C 0.10 2.63 6.70 22.57 0.15 2.78 16 19 O -0.33 -7.59 10.28 -79.61 -0.82 -8.41 16 20 C 0.02 0.20 9.81 113.37 1.11 1.31 16 21 C 0.05 1.57 6.50 22.57 0.15 1.71 16 22 O -0.32 -8.74 10.22 -79.64 -0.81 -9.55 16 23 C 0.40 8.86 5.98 113.37 0.68 9.54 16 24 F -0.21 -6.34 15.57 44.97 0.70 -5.64 16 25 F -0.21 -5.41 15.60 44.97 0.70 -4.71 16 26 C -0.15 -4.73 7.91 22.35 0.18 -4.55 16 27 H 0.06 2.01 6.63 -2.39 -0.02 1.99 16 28 H 0.04 1.89 6.85 -2.39 -0.02 1.88 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.57 3.42 -2.39 -0.01 1.57 16 31 H 0.07 2.25 7.50 -2.38 -0.02 2.23 16 32 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 33 H 0.34 12.72 6.69 -89.69 -0.60 12.12 16 34 H 0.06 2.19 7.87 -2.38 -0.02 2.17 16 35 H 0.05 1.52 7.48 -2.39 -0.02 1.50 16 36 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 37 H 0.17 2.28 6.30 -2.91 -0.02 2.26 16 38 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 39 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 41 H 0.24 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.12 4.38 5.10 -2.91 -0.01 4.37 16 Total: -1.00 -75.50 341.97 3.67 -71.84 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.39 Total: 21.43 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 4.64 Total: -21.30 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -2.79 Total: -90.49 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -1.63 Total: -17.97 kcal Atomic # 9 Polarization: -11.75 SS G_CDS: 1.40 Total: -10.35 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.67 Total: 46.84 kcal Total: -75.50 3.67 -71.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.785 kcal (2) G-P(sol) polarization free energy of solvation -75.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds