Wall clock time and date at job start Tue Mar 31 2020 11:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47063 * 2 1 4 4 H 1.09000 * 109.46879 * 185.15971 * 3 2 1 5 5 C 1.50697 * 109.47018 * 305.15734 * 3 2 1 6 6 H 1.08006 * 119.99741 * 119.99919 * 5 3 2 7 7 C 1.37873 * 120.00312 * 300.00373 * 5 3 2 8 8 N 1.31520 * 119.99755 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00321 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46974 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47322 * 119.99472 * 9 7 5 12 12 H 1.48499 * 109.47047 * 239.99922 * 9 7 5 13 13 N 1.46906 * 109.47026 * 65.15819 * 3 2 1 14 14 C 1.46903 * 110.99588 * 85.93883 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.71948 * 14 13 3 16 16 C 1.38287 * 119.99718 * 259.99705 * 15 14 13 17 17 C 1.38211 * 120.14879 * 180.02562 * 16 15 14 18 18 C 1.38289 * 120.14084 * 359.97438 * 17 16 15 19 19 C 1.38519 * 120.00176 * 0.02562 * 18 17 16 20 20 O 1.35994 * 120.06953 * 180.02562 * 19 18 17 21 21 C 1.42898 * 117.00254 * 359.97438 * 20 19 18 22 22 C 1.38516 * 120.00557 * 79.72293 * 15 14 13 23 23 O 1.36000 * 120.07029 * 0.02562 * 22 15 14 24 24 C 1.42897 * 117.00382 * 89.99680 * 23 22 15 25 25 F 1.39900 * 109.47070 * 300.00497 * 24 23 22 26 26 F 1.39902 * 109.46761 * 59.99726 * 24 23 22 27 27 H 1.09004 * 109.46594 * 54.85743 * 1 2 3 28 28 H 1.08999 * 109.47554 * 294.85747 * 1 2 3 29 29 H 1.09000 * 109.46823 * 174.84923 * 1 2 3 30 30 H 1.09001 * 109.46657 * 119.99357 * 2 1 3 31 31 H 1.08993 * 109.47572 * 239.99900 * 2 1 3 32 32 H 0.97001 * 119.99552 * 180.02562 * 8 7 5 33 33 H 1.00892 * 111.00186 * 321.98133 * 13 3 2 34 34 H 1.08994 * 109.46864 * 294.71113 * 14 13 3 35 35 H 1.08994 * 109.47486 * 54.71800 * 14 13 3 36 36 H 1.08004 * 119.92695 * 359.97438 * 16 15 14 37 37 H 1.07992 * 119.92885 * 179.97438 * 17 16 15 38 38 H 1.08002 * 119.99748 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47565 * 300.00559 * 21 20 19 40 40 H 1.09001 * 109.46779 * 60.00537 * 21 20 19 41 41 H 1.09002 * 109.47136 * 180.02562 * 21 20 19 42 42 H 1.08989 * 109.47356 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4361 2.1888 -1.1616 6 1 0.8269 3.0628 -0.9839 7 6 1.6611 1.7559 -2.4511 8 7 2.4033 0.6919 -2.6674 9 14 0.9131 2.6814 -3.8910 10 1 0.1268 3.8344 -3.3836 11 1 1.9963 3.1732 -4.7798 12 1 0.0211 1.7720 -4.6542 13 7 1.6546 2.0982 1.2569 14 6 2.6436 1.8374 2.3114 15 6 2.2848 2.6281 3.5431 16 6 2.9387 3.8152 3.8175 17 6 2.6124 4.5426 4.9466 18 6 1.6302 4.0865 5.8066 19 6 0.9713 2.8981 5.5375 20 8 0.0048 2.4486 6.3820 21 6 -0.2801 3.2524 7.5287 22 6 1.2960 2.1686 4.3975 23 8 0.6484 1.0038 4.1264 24 6 1.2139 -0.1933 4.6640 25 9 2.5112 -0.3601 4.1676 26 9 1.2567 -0.1029 6.0595 27 1 -0.3633 0.5916 -0.8404 28 1 -0.3634 0.4320 0.9324 29 1 -0.3633 -1.0235 -0.0923 30 1 1.8932 -0.5137 0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 2.5619 0.3876 -3.5747 33 1 0.7322 1.8100 1.5470 34 1 2.6478 0.7741 2.5506 35 1 3.6327 2.1355 1.9636 36 1 3.7067 4.1745 3.1485 37 1 3.1257 5.4690 5.1577 38 1 1.3774 4.6565 6.6884 39 1 0.6190 3.3487 8.1374 40 1 -0.6087 4.2406 7.2070 41 1 -1.0676 2.7807 8.1165 42 1 0.6011 -1.0467 4.3742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183461.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:26 Heat of formation + Delta-G solvation = -157.566798 kcal Electronic energy + Delta-G solvation = -27813.211919 eV Core-core repulsion = 23622.541538 eV Total energy + Delta-G solvation = -4190.670380 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.99106 -47.10915 -40.49755 -38.29230 -37.04151 -36.20494 -32.93627 -31.23065 -30.07835 -29.48437 -27.44276 -26.51551 -25.73581 -24.22013 -23.11121 -22.26900 -21.01237 -19.24503 -18.89682 -18.07340 -17.80356 -17.47129 -16.40514 -16.03570 -15.88674 -15.61818 -14.83608 -14.69154 -14.52170 -14.17764 -13.89761 -13.76792 -13.53285 -13.34692 -13.18581 -12.74069 -12.45497 -12.38474 -12.19475 -12.12290 -11.91941 -11.81463 -11.50181 -11.19614 -11.08625 -10.90683 -10.78640 -10.50960 -10.45242 -9.90812 -9.77359 -9.49966 -8.92693 -8.66210 -8.29816 -8.15566 -7.11631 -5.92751 -3.93710 1.09100 1.42393 3.02532 3.16199 3.34723 3.42835 3.48379 3.69336 3.79358 4.49260 4.61396 4.72097 4.77940 4.89573 4.98711 5.01418 5.15476 5.30697 5.38829 5.38966 5.43382 5.58335 5.76883 5.97813 6.15790 6.33215 6.38885 6.43334 6.44524 6.59012 6.63849 6.70892 6.90684 6.98240 7.33456 7.34326 7.43456 7.58590 7.76259 7.94692 8.33750 8.62596 8.67882 9.12528 9.69693 11.14277 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.004048 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.566842 B = 6914.697768 C = 7576.420712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.144 4.144 3 C 0.215 3.785 4 H 0.032 0.968 5 C -0.485 4.485 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.676 5.676 14 C 0.084 3.916 15 C -0.019 4.019 16 C -0.134 4.134 17 C -0.072 4.072 18 C -0.215 4.215 19 C 0.128 3.872 20 O -0.304 6.304 21 C 0.027 3.973 22 C 0.036 3.964 23 O -0.312 6.312 24 C 0.402 3.598 25 F -0.200 7.200 26 F -0.204 7.204 27 H 0.068 0.932 28 H 0.030 0.970 29 H 0.022 0.978 30 H 0.010 0.990 31 H 0.092 0.908 32 H 0.258 0.742 33 H 0.332 0.668 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.098 0.902 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 1.959 19.804 19.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.184 4.184 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.524 4.524 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.307 5.307 14 C -0.045 4.045 15 C -0.020 4.020 16 C -0.152 4.152 17 C -0.090 4.090 18 C -0.234 4.234 19 C 0.081 3.919 20 O -0.217 6.217 21 C -0.068 4.068 22 C -0.008 4.008 23 O -0.231 6.231 24 C 0.313 3.687 25 F -0.182 7.182 26 F -0.186 7.186 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.029 0.971 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.151 0.849 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.833 2.254 19.375 19.592 hybrid contribution -0.282 -0.293 -0.258 0.481 sum -2.115 1.961 19.118 19.334 Atomic orbital electron populations 1.21602 0.97676 0.98576 1.00939 1.22087 0.95035 1.01079 1.00151 1.19239 0.95943 0.88656 0.85367 0.94991 1.21106 1.30256 1.11398 0.89593 0.91979 1.24905 0.95612 0.95190 0.98684 1.69900 1.39175 1.24087 1.20491 0.86529 0.78936 0.79905 0.82577 1.19768 1.21253 1.21295 1.60875 1.03767 1.63168 1.02903 1.21079 0.97859 0.96830 0.88762 1.20242 0.91395 0.95386 0.95010 1.20952 1.01900 0.94485 0.97900 1.21016 0.95559 0.98950 0.93514 1.21052 1.01728 0.97308 1.03265 1.19252 0.89625 0.93573 0.89403 1.86170 1.52189 1.48714 1.34600 1.23054 1.01314 0.95867 0.86544 1.17680 0.99496 0.88584 0.95045 1.86752 1.50540 1.12612 1.73215 1.23578 0.80117 0.91106 0.73937 1.93036 1.42784 1.95500 1.86892 1.93066 1.96549 1.96557 1.32461 0.91319 0.95137 0.95879 0.97104 0.88986 0.93251 0.84932 0.93466 0.90606 0.84862 0.85415 0.85181 0.92799 0.92642 0.88315 0.81405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.40 37.16 0.35 -2.48 16 2 C -0.14 -3.40 5.51 -26.73 -0.15 -3.54 16 3 C 0.22 5.36 2.33 -68.86 -0.16 5.20 16 4 H 0.03 0.88 7.70 -51.93 -0.40 0.48 16 5 C -0.48 -13.19 7.25 -34.44 -0.25 -13.44 16 6 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 7 C 0.06 1.54 5.28 -17.82 -0.09 1.45 16 8 N -0.90 -25.34 11.38 55.43 0.63 -24.71 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.68 -14.74 6.19 -109.22 -0.68 -15.42 16 14 C 0.08 1.59 5.23 -4.97 -0.03 1.56 16 15 C -0.02 -0.32 5.29 -104.50 -0.55 -0.88 16 16 C -0.13 -1.94 9.66 -39.57 -0.38 -2.33 16 17 C -0.07 -0.88 10.04 -39.57 -0.40 -1.28 16 18 C -0.21 -2.63 9.04 -39.46 -0.36 -2.98 16 19 C 0.13 1.87 6.44 -39.12 -0.25 1.61 16 20 O -0.30 -4.11 9.71 -34.20 -0.33 -4.44 16 21 C 0.03 0.23 9.81 101.05 0.99 1.23 16 22 C 0.04 0.59 5.33 -39.12 -0.21 0.38 16 23 O -0.31 -5.05 9.42 -34.22 -0.32 -5.38 16 24 C 0.40 5.43 6.34 101.05 0.64 6.07 16 25 F -0.20 -3.06 14.39 2.25 0.03 -3.03 16 26 F -0.20 -2.87 16.43 2.25 0.04 -2.83 16 27 H 0.07 1.63 6.85 -51.93 -0.36 1.28 16 28 H 0.03 0.61 6.63 -51.93 -0.34 0.26 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.01 0.23 7.50 -51.93 -0.39 -0.16 16 31 H 0.09 2.43 6.23 -51.93 -0.32 2.11 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 33 H 0.33 7.21 6.62 -39.30 -0.26 6.95 16 34 H 0.05 0.90 4.50 -51.93 -0.23 0.67 16 35 H 0.08 1.43 7.78 -51.93 -0.40 1.03 16 36 H 0.13 1.79 8.04 -52.48 -0.42 1.37 16 37 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.13 1.20 6.30 -52.49 -0.33 0.87 16 39 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 40 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.17 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -30.89 347.43 -6.76 -37.64 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.50 Total: 5.89 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -0.85 Total: -9.42 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.05 Total: -40.13 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.65 Total: -9.81 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.07 Total: -5.85 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.89 -6.76 -37.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183461.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.924 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds