Wall clock time and date at job start Tue Mar 31 2020 11:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47063 * 2 1 4 4 H 1.09000 * 109.46879 * 185.15971 * 3 2 1 5 5 C 1.50697 * 109.47018 * 305.15734 * 3 2 1 6 6 H 1.08006 * 119.99741 * 119.99919 * 5 3 2 7 7 C 1.37873 * 120.00312 * 300.00373 * 5 3 2 8 8 N 1.31520 * 119.99755 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00321 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46974 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47322 * 119.99472 * 9 7 5 12 12 H 1.48499 * 109.47047 * 239.99922 * 9 7 5 13 13 N 1.46906 * 109.47026 * 65.15819 * 3 2 1 14 14 C 1.46903 * 110.99588 * 85.93883 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.71948 * 14 13 3 16 16 C 1.38287 * 119.99718 * 259.99705 * 15 14 13 17 17 C 1.38211 * 120.14879 * 180.02562 * 16 15 14 18 18 C 1.38289 * 120.14084 * 359.97438 * 17 16 15 19 19 C 1.38519 * 120.00176 * 0.02562 * 18 17 16 20 20 O 1.35994 * 120.06953 * 180.02562 * 19 18 17 21 21 C 1.42898 * 117.00254 * 359.97438 * 20 19 18 22 22 C 1.38516 * 120.00557 * 79.72293 * 15 14 13 23 23 O 1.36000 * 120.07029 * 0.02562 * 22 15 14 24 24 C 1.42897 * 117.00382 * 89.99680 * 23 22 15 25 25 F 1.39900 * 109.47070 * 300.00497 * 24 23 22 26 26 F 1.39902 * 109.46761 * 59.99726 * 24 23 22 27 27 H 1.09004 * 109.46594 * 54.85743 * 1 2 3 28 28 H 1.08999 * 109.47554 * 294.85747 * 1 2 3 29 29 H 1.09000 * 109.46823 * 174.84923 * 1 2 3 30 30 H 1.09001 * 109.46657 * 119.99357 * 2 1 3 31 31 H 1.08993 * 109.47572 * 239.99900 * 2 1 3 32 32 H 0.97001 * 119.99552 * 180.02562 * 8 7 5 33 33 H 1.00892 * 111.00186 * 321.98133 * 13 3 2 34 34 H 1.08994 * 109.46864 * 294.71113 * 14 13 3 35 35 H 1.08994 * 109.47486 * 54.71800 * 14 13 3 36 36 H 1.08004 * 119.92695 * 359.97438 * 16 15 14 37 37 H 1.07992 * 119.92885 * 179.97438 * 17 16 15 38 38 H 1.08002 * 119.99748 * 179.97438 * 18 17 16 39 39 H 1.09000 * 109.47565 * 300.00559 * 21 20 19 40 40 H 1.09001 * 109.46779 * 60.00537 * 21 20 19 41 41 H 1.09002 * 109.47136 * 180.02562 * 21 20 19 42 42 H 1.08989 * 109.47356 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4361 2.1888 -1.1616 6 1 0.8269 3.0628 -0.9839 7 6 1.6611 1.7559 -2.4511 8 7 2.4033 0.6919 -2.6674 9 14 0.9131 2.6814 -3.8910 10 1 0.1268 3.8344 -3.3836 11 1 1.9963 3.1732 -4.7798 12 1 0.0211 1.7720 -4.6542 13 7 1.6546 2.0982 1.2569 14 6 2.6436 1.8374 2.3114 15 6 2.2848 2.6281 3.5431 16 6 2.9387 3.8152 3.8175 17 6 2.6124 4.5426 4.9466 18 6 1.6302 4.0865 5.8066 19 6 0.9713 2.8981 5.5375 20 8 0.0048 2.4486 6.3820 21 6 -0.2801 3.2524 7.5287 22 6 1.2960 2.1686 4.3975 23 8 0.6484 1.0038 4.1264 24 6 1.2139 -0.1933 4.6640 25 9 2.5112 -0.3601 4.1676 26 9 1.2567 -0.1029 6.0595 27 1 -0.3633 0.5916 -0.8404 28 1 -0.3634 0.4320 0.9324 29 1 -0.3633 -1.0235 -0.0923 30 1 1.8932 -0.5137 0.8901 31 1 1.8934 -0.5138 -0.8899 32 1 2.5619 0.3876 -3.5747 33 1 0.7322 1.8100 1.5470 34 1 2.6478 0.7741 2.5506 35 1 3.6327 2.1355 1.9636 36 1 3.7067 4.1745 3.1485 37 1 3.1257 5.4690 5.1577 38 1 1.3774 4.6565 6.6884 39 1 0.6190 3.3487 8.1374 40 1 -0.6087 4.2406 7.2070 41 1 -1.0676 2.7807 8.1165 42 1 0.6011 -1.0467 4.3742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183461.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:51:25 Heat of formation + Delta-G solvation = -176.922908 kcal Electronic energy + Delta-G solvation = -27814.051262 eV Core-core repulsion = 23622.541538 eV Total energy + Delta-G solvation = -4191.509724 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.08189 -48.20724 -41.53978 -39.35599 -38.34657 -37.74513 -34.68376 -32.99079 -31.11926 -30.92381 -28.48592 -28.06863 -26.89044 -25.78084 -24.94146 -23.32319 -22.18768 -21.16452 -19.98435 -19.13484 -18.86588 -18.59897 -17.97171 -17.45532 -16.91505 -16.70793 -16.53643 -16.28572 -15.72587 -15.32065 -15.23109 -14.95860 -14.74525 -14.63526 -14.49900 -14.38606 -14.14235 -13.76223 -13.38322 -13.27516 -13.08073 -13.02903 -12.97233 -12.79830 -12.54038 -12.42224 -12.18818 -12.02507 -11.91169 -11.69700 -11.57869 -11.39572 -10.93898 -10.41188 -9.80465 -9.18676 -8.87786 -8.02956 -6.11101 0.02562 0.34912 1.43033 1.45710 1.57258 2.02158 2.27942 2.47644 2.66923 2.71382 3.25607 3.64075 3.70412 3.76891 3.91458 3.97505 4.05142 4.32737 4.35017 4.40224 4.41984 4.52799 4.57299 4.62322 4.70302 4.74267 4.80138 4.85254 5.14003 5.15846 5.33695 5.37817 5.45215 5.52819 5.60429 5.72794 5.76268 5.84331 5.88841 6.33952 6.44990 6.70029 6.83986 7.00818 7.56332 9.02608 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.004048 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.566842 B = 6914.697768 C = 7576.420712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.135 4.135 3 C 0.221 3.779 4 H -0.002 1.002 5 C -0.497 4.497 6 H 0.050 0.950 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.281 1.281 13 N -0.677 5.677 14 C 0.091 3.909 15 C -0.045 4.045 16 C -0.147 4.147 17 C -0.063 4.063 18 C -0.205 4.205 19 C 0.117 3.883 20 O -0.324 6.324 21 C 0.017 3.983 22 C 0.014 3.986 23 O -0.329 6.329 24 C 0.396 3.604 25 F -0.214 7.214 26 F -0.208 7.208 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.023 0.977 31 H 0.063 0.937 32 H 0.259 0.741 33 H 0.333 0.667 34 H 0.044 0.956 35 H 0.065 0.935 36 H 0.136 0.864 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.117 0.883 42 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 3.135 21.578 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.175 4.175 3 C 0.113 3.887 4 H 0.016 0.984 5 C -0.536 4.536 6 H 0.068 0.932 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.207 1.207 13 N -0.308 5.308 14 C -0.038 4.038 15 C -0.047 4.047 16 C -0.166 4.166 17 C -0.081 4.081 18 C -0.223 4.223 19 C 0.071 3.929 20 O -0.237 6.237 21 C -0.077 4.077 22 C -0.030 4.030 23 O -0.248 6.248 24 C 0.307 3.693 25 F -0.196 7.196 26 F -0.190 7.190 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.152 0.848 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.154 0.846 37 H 0.183 0.817 38 H 0.183 0.817 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.135 0.865 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.854 3.437 21.174 21.640 hybrid contribution 0.039 -0.629 -0.662 0.914 sum -2.815 2.808 20.512 20.894 Atomic orbital electron populations 1.21467 0.95949 0.99622 1.00679 1.21918 0.96467 0.99885 0.99241 1.18997 0.93648 0.89578 0.86469 0.98420 1.21273 1.30234 1.11248 0.90795 0.93173 1.25574 0.95952 0.95904 1.00928 1.70025 1.39995 1.25125 1.20952 0.85600 0.78195 0.78796 0.79590 1.19512 1.20964 1.20732 1.60749 1.04427 1.62821 1.02819 1.20952 0.96501 0.97250 0.89053 1.20079 0.93332 0.96564 0.94678 1.21144 1.02026 0.94216 0.99184 1.21403 0.95079 0.99597 0.92026 1.21495 1.00470 0.96358 1.03994 1.19396 0.90164 0.94078 0.89258 1.86142 1.51755 1.50136 1.35711 1.23400 1.02688 0.96297 0.85364 1.17886 0.99869 0.89147 0.96063 1.86702 1.51034 1.13260 1.73797 1.24237 0.79965 0.91478 0.73634 1.93003 1.44017 1.95504 1.87078 1.93047 1.96541 1.96581 1.32855 0.93654 0.93607 0.93720 0.95850 0.91889 0.93217 0.84848 0.93845 0.91685 0.84593 0.81706 0.81658 0.91349 0.91321 0.86472 0.77374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 9.40 71.98 0.68 -4.47 16 2 C -0.14 -6.50 5.51 30.60 0.17 -6.33 16 3 C 0.22 11.38 2.33 44.17 0.10 11.48 16 4 H 0.00 -0.12 7.70 -2.39 -0.02 -0.14 16 5 C -0.50 -27.63 7.25 25.60 0.19 -27.45 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 7 C 0.01 0.80 5.28 84.65 0.45 1.25 16 8 N -0.92 -53.05 11.38 21.45 0.24 -52.81 16 9 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 N -0.68 -30.27 6.19 -499.45 -3.09 -33.37 16 14 C 0.09 3.57 5.23 85.56 0.45 4.01 16 15 C -0.05 -1.54 5.29 -19.79 -0.10 -1.64 16 16 C -0.15 -4.16 9.66 22.27 0.22 -3.95 16 17 C -0.06 -1.36 10.04 22.28 0.22 -1.14 16 18 C -0.20 -4.37 9.04 22.35 0.20 -4.17 16 19 C 0.12 3.24 6.44 22.57 0.15 3.38 16 20 O -0.32 -8.12 9.71 -79.65 -0.77 -8.89 16 21 C 0.02 0.23 9.81 113.37 1.11 1.34 16 22 C 0.01 0.46 5.33 22.57 0.12 0.58 16 23 O -0.33 -10.53 9.42 -79.71 -0.75 -11.28 16 24 C 0.40 10.42 6.34 113.37 0.72 11.14 16 25 F -0.21 -6.57 14.39 44.97 0.65 -5.92 16 26 F -0.21 -5.67 16.43 44.97 0.74 -4.93 16 27 H 0.04 2.15 6.85 -2.38 -0.02 2.13 16 28 H 0.04 1.80 6.63 -2.39 -0.02 1.78 16 29 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.02 1.03 7.50 -2.39 -0.02 1.01 16 31 H 0.06 3.41 6.23 -2.39 -0.01 3.39 16 32 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 33 H 0.33 14.65 6.62 -89.70 -0.59 14.06 16 34 H 0.04 1.72 4.50 -2.39 -0.01 1.71 16 35 H 0.06 2.60 7.78 -2.39 -0.02 2.58 16 36 H 0.14 3.63 8.04 -2.91 -0.02 3.61 16 37 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 38 H 0.17 2.27 6.30 -2.91 -0.02 2.26 16 39 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 40 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 41 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.21 3.58 8.14 -2.39 -0.02 3.56 16 Total: -1.00 -68.24 347.43 4.16 -64.08 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.46 Total: 22.66 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 4.66 Total: -15.96 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -2.85 Total: -86.18 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -1.52 Total: -20.17 kcal Atomic # 9 Polarization: -12.24 SS G_CDS: 1.39 Total: -10.85 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -68.24 4.16 -64.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183461.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.839 kcal (2) G-P(sol) polarization free energy of solvation -68.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds