Wall clock time and date at job start Tue Mar 31 2020 10:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46979 * 2 1 4 4 C 1.50699 * 109.47535 * 239.99935 * 2 1 3 5 5 N 1.30154 * 125.48128 * 264.69057 * 4 2 1 6 6 C 1.35741 * 108.98701 * 179.89362 * 5 4 2 7 7 C 1.47297 * 126.22322 * 180.11159 * 6 5 4 8 8 O 1.21632 * 120.00189 * 180.30089 * 7 6 5 9 9 N 1.34779 * 119.99440 * 0.30157 * 7 6 5 10 10 C 1.39862 * 119.99582 * 174.78460 * 9 7 6 11 11 C 1.38983 * 120.03669 * 326.13303 * 10 9 7 12 12 C 1.38158 * 120.05967 * 179.74159 * 11 10 9 13 13 C 1.38165 * 120.14097 * 0.56174 * 12 11 10 14 14 C 1.38911 * 120.07599 * 359.69599 * 13 12 11 15 15 O 1.35753 * 120.03069 * 180.02562 * 14 13 12 16 16 C 1.34833 * 116.99519 * 185.92018 * 15 14 13 17 17 H 1.07991 * 120.00411 * 5.40918 * 16 15 14 18 18 C 1.38661 * 119.99717 * 185.40131 * 16 15 14 19 19 N 1.31554 * 119.99789 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99939 * 0.02562 * 18 16 15 21 21 H 1.48508 * 109.46966 * 89.99877 * 20 18 16 22 22 H 1.48501 * 109.47047 * 209.99791 * 20 18 16 23 23 H 1.48499 * 109.47154 * 330.00185 * 20 18 16 24 24 C 1.38733 * 120.03669 * 146.41348 * 10 9 7 25 25 C 1.36449 * 107.55936 * 0.36908 * 6 5 4 26 26 N 1.35852 * 125.48108 * 84.99807 * 4 2 1 27 27 H 0.97008 * 126.18544 * 359.94422 * 26 4 2 28 28 H 1.09004 * 109.46977 * 60.00558 * 1 2 3 29 29 H 1.08993 * 109.47821 * 300.00035 * 1 2 3 30 30 H 1.09001 * 109.46732 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46977 * 119.99442 * 2 1 3 32 32 H 1.09003 * 109.47032 * 300.00047 * 3 2 1 33 33 H 1.09005 * 109.46766 * 59.99763 * 3 2 1 34 34 H 1.08995 * 109.47256 * 179.97438 * 3 2 1 35 35 H 0.96996 * 120.00892 * 354.78889 * 9 7 6 36 36 H 1.07997 * 119.96925 * 0.03057 * 11 10 9 37 37 H 1.08006 * 119.92582 * 180.27796 * 12 11 10 38 38 H 1.08010 * 119.96214 * 179.71804 * 13 12 11 39 39 H 0.97004 * 120.00274 * 180.02562 * 19 18 16 40 40 H 1.08004 * 120.06624 * 359.95246 * 24 10 9 41 41 H 1.08000 * 126.61323 * 179.81295 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.3768 -1.9641 -1.2912 6 6 2.7748 -2.2518 -2.5567 7 6 3.2405 -3.5607 -3.0462 8 8 3.5769 -3.6910 -4.2078 9 7 3.2937 -4.6140 -2.2070 10 6 3.6307 -5.8806 -2.6950 11 6 3.2441 -6.2583 -3.9755 12 6 3.5814 -7.5073 -4.4601 13 6 4.2936 -8.3890 -3.6698 14 6 4.6783 -8.0195 -2.3872 15 8 5.3785 -8.8862 -1.6117 16 6 5.6141 -8.5143 -0.3373 17 1 5.1770 -7.6058 0.0497 18 6 6.4174 -9.2986 0.4766 19 7 6.6468 -8.9360 1.7202 20 14 7.1737 -10.8699 -0.1929 21 1 8.5001 -10.5663 -0.7880 22 1 7.3389 -11.8492 0.9111 23 1 6.2836 -11.4432 -1.2342 24 6 4.3463 -6.7635 -1.8994 25 6 2.6707 -1.1068 -3.2914 26 7 2.2044 -0.1438 -2.4531 27 1 2.0262 0.7809 -2.6860 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 -0.8900 33 1 1.6765 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 3.0982 -4.4937 -1.2646 36 1 2.6836 -5.5730 -4.5939 37 1 3.2837 -7.7969 -5.4571 38 1 4.5518 -9.3664 -4.0499 39 1 7.2090 -9.4844 2.2894 40 1 4.6446 -6.4738 -0.9027 41 1 2.9118 -0.9885 -4.3375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081263798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:37 Heat of formation + Delta-G solvation = 14.079859 kcal Electronic energy + Delta-G solvation = -24823.795921 eV Core-core repulsion = 21091.257884 eV Total energy + Delta-G solvation = -3732.538036 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.45762 -39.90162 -38.61000 -36.48681 -35.75360 -34.19269 -32.93386 -32.28286 -29.78947 -29.24305 -28.48345 -27.67140 -25.19135 -24.00053 -23.39395 -21.68838 -21.32884 -20.60275 -19.64680 -18.43644 -17.77347 -17.64072 -16.49492 -15.79186 -15.60624 -15.24514 -14.96209 -14.78894 -14.56925 -14.28520 -14.05709 -13.84251 -13.73574 -13.49668 -13.31397 -12.99343 -12.72030 -12.26848 -12.10987 -12.04409 -11.70235 -11.59489 -11.47225 -11.17252 -10.87441 -10.71976 -10.55081 -10.37742 -10.24514 -9.91915 -9.56876 -9.41944 -8.80070 -8.77257 -7.70380 -7.21471 -6.36460 -4.03293 1.35768 1.97392 2.29404 2.42360 2.62510 3.26221 3.30073 3.39622 3.45345 3.58073 3.84077 4.28851 4.34153 4.56858 4.59807 4.65059 4.82575 4.93920 4.97264 5.08081 5.14164 5.16261 5.27161 5.35483 5.47940 5.61154 5.69329 5.70721 5.78609 5.99547 6.06232 6.17315 6.27334 6.29631 6.55321 6.87522 6.96893 7.04676 7.25645 7.27547 7.52644 7.67099 7.83756 7.89193 8.08401 8.41873 8.99150 9.61876 10.71361 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.002868 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.355785 B = 9761.188569 C =11088.579040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.012 4.012 3 C -0.153 4.153 4 C 0.222 3.778 5 N -0.457 5.457 6 C -0.054 4.054 7 C 0.602 3.398 8 O -0.527 6.527 9 N -0.654 5.654 10 C 0.183 3.817 11 C -0.198 4.198 12 C -0.065 4.065 13 C -0.201 4.201 14 C 0.174 3.826 15 O -0.216 6.216 16 C -0.388 4.388 17 H 0.105 0.895 18 C 0.063 3.937 19 N -0.881 5.881 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.242 4.242 25 C 0.035 3.965 26 N -0.563 5.563 27 H 0.422 0.578 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.416 0.584 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.279 0.721 40 H 0.137 0.863 41 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.831 21.090 -5.706 24.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 C -0.210 4.210 4 C -0.044 4.044 5 N -0.177 5.177 6 C -0.183 4.183 7 C 0.389 3.611 8 O -0.402 6.402 9 N -0.297 5.297 10 C 0.089 3.911 11 C -0.219 4.219 12 C -0.083 4.083 13 C -0.221 4.221 14 C 0.121 3.879 15 O -0.121 6.121 16 C -0.464 4.464 17 H 0.122 0.878 18 C -0.140 4.140 19 N -0.519 5.519 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.263 4.263 25 C -0.104 4.104 26 N -0.166 5.166 27 H 0.261 0.739 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.126 0.874 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.253 0.747 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.089 0.911 40 H 0.154 0.846 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.395 20.101 -5.698 23.798 hybrid contribution 0.309 0.593 -0.325 0.743 sum -11.087 20.694 -6.023 24.237 Atomic orbital electron populations 1.21857 0.93199 1.03094 1.02180 1.19676 0.96232 0.94922 0.92430 1.21911 1.01860 0.94672 1.02605 1.23394 1.03662 0.89695 0.87668 1.70564 1.15480 1.12502 1.19129 1.20552 1.11659 0.94954 0.91180 1.16900 0.77094 0.81987 0.85106 1.90812 1.48170 1.84114 1.17147 1.43265 1.67312 1.06334 1.12793 1.17437 0.95929 0.83566 0.94144 1.20614 1.07644 0.97609 0.96035 1.20513 0.96778 0.92778 0.98269 1.20231 1.07148 1.01214 0.93526 1.18801 0.90757 0.88048 0.90251 1.83611 1.64156 1.40951 1.23432 1.20743 1.31402 1.11401 0.82865 0.87753 1.24458 0.95861 0.99056 0.94621 1.69649 1.37319 1.39028 1.05915 0.86184 0.80015 0.81838 0.78888 1.19952 1.20852 1.18279 1.20954 1.07049 0.95386 1.02950 1.22756 1.02012 0.87969 0.97670 1.43229 1.50688 1.12778 1.09914 0.73873 0.92808 0.91298 0.91557 0.87446 0.92880 0.90851 0.91856 0.74733 0.86150 0.86449 0.86405 0.91133 0.84558 0.79018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.18 37.16 0.34 -0.47 16 2 C -0.01 -0.08 3.39 -91.77 -0.31 -0.39 16 3 C -0.15 -0.65 8.94 37.16 0.33 -0.31 16 4 C 0.22 2.13 6.86 -154.96 -1.06 1.07 16 5 N -0.46 -6.10 11.00 -7.24 -0.08 -6.18 16 6 C -0.05 -0.77 6.97 -83.10 -0.58 -1.35 16 7 C 0.60 10.37 7.54 -12.58 -0.09 10.27 16 8 O -0.53 -10.13 14.59 5.25 0.08 -10.05 16 9 N -0.65 -11.70 5.33 -10.88 -0.06 -11.76 16 10 C 0.18 3.73 6.26 -83.73 -0.52 3.20 16 11 C -0.20 -3.88 8.65 -39.33 -0.34 -4.22 16 12 C -0.06 -1.20 10.03 -39.64 -0.40 -1.60 16 13 C -0.20 -4.18 9.99 -39.36 -0.39 -4.58 16 14 C 0.17 4.17 6.64 -39.14 -0.26 3.91 16 15 O -0.22 -5.83 8.58 0.03 0.00 -5.83 16 16 C -0.39 -11.12 9.90 30.89 0.31 -10.82 16 17 H 0.11 3.05 5.53 -52.49 -0.29 2.76 16 18 C 0.06 1.79 5.49 -17.51 -0.10 1.70 16 19 N -0.88 -25.74 13.96 55.48 0.77 -24.96 16 20 Si 0.91 22.02 28.62 -169.99 -4.86 17.16 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 24 C -0.24 -5.50 9.04 -39.20 -0.35 -5.85 16 25 C 0.04 0.36 11.77 -16.38 -0.19 0.17 16 26 N -0.56 -4.20 5.87 -9.94 -0.06 -4.26 16 27 H 0.42 1.54 8.14 -40.82 -0.33 1.21 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.15 7.41 -51.93 -0.38 -0.23 16 33 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.42 6.88 8.54 -40.82 -0.35 6.53 16 36 H 0.12 2.29 6.44 -52.49 -0.34 1.95 16 37 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 38 H 0.12 2.25 8.06 -52.48 -0.42 1.82 16 39 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.14 3.21 5.72 -52.48 -0.30 2.91 16 41 H 0.19 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 353.07 15.07 5.32 5.32 Total: -1.00 -34.24 353.07 -7.45 -41.69 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -4.93 Total: 8.15 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -3.63 Total: -9.27 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.58 Total: -47.16 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.08 Total: -15.88 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.86 Total: 17.16 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.24 -7.45 -41.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081263798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.771 kcal (2) G-P(sol) polarization free energy of solvation -34.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds