Wall clock time and date at job start Tue Mar 31 2020 10:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46979 * 2 1 4 4 C 1.50699 * 109.47535 * 239.99935 * 2 1 3 5 5 N 1.30154 * 125.48128 * 264.69057 * 4 2 1 6 6 C 1.35741 * 108.98701 * 179.89362 * 5 4 2 7 7 C 1.47297 * 126.22322 * 180.11159 * 6 5 4 8 8 O 1.21632 * 120.00189 * 180.30089 * 7 6 5 9 9 N 1.34779 * 119.99440 * 0.30157 * 7 6 5 10 10 C 1.39862 * 119.99582 * 174.78460 * 9 7 6 11 11 C 1.38983 * 120.03669 * 326.13303 * 10 9 7 12 12 C 1.38158 * 120.05967 * 179.74159 * 11 10 9 13 13 C 1.38165 * 120.14097 * 0.56174 * 12 11 10 14 14 C 1.38911 * 120.07599 * 359.69599 * 13 12 11 15 15 O 1.35753 * 120.03069 * 180.02562 * 14 13 12 16 16 C 1.34833 * 116.99519 * 185.92018 * 15 14 13 17 17 H 1.07991 * 120.00411 * 5.40918 * 16 15 14 18 18 C 1.38661 * 119.99717 * 185.40131 * 16 15 14 19 19 N 1.31554 * 119.99789 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99939 * 0.02562 * 18 16 15 21 21 H 1.48508 * 109.46966 * 89.99877 * 20 18 16 22 22 H 1.48501 * 109.47047 * 209.99791 * 20 18 16 23 23 H 1.48499 * 109.47154 * 330.00185 * 20 18 16 24 24 C 1.38733 * 120.03669 * 146.41348 * 10 9 7 25 25 C 1.36449 * 107.55936 * 0.36908 * 6 5 4 26 26 N 1.35852 * 125.48108 * 84.99807 * 4 2 1 27 27 H 0.97008 * 126.18544 * 359.94422 * 26 4 2 28 28 H 1.09004 * 109.46977 * 60.00558 * 1 2 3 29 29 H 1.08993 * 109.47821 * 300.00035 * 1 2 3 30 30 H 1.09001 * 109.46732 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46977 * 119.99442 * 2 1 3 32 32 H 1.09003 * 109.47032 * 300.00047 * 3 2 1 33 33 H 1.09005 * 109.46766 * 59.99763 * 3 2 1 34 34 H 1.08995 * 109.47256 * 179.97438 * 3 2 1 35 35 H 0.96996 * 120.00892 * 354.78889 * 9 7 6 36 36 H 1.07997 * 119.96925 * 0.03057 * 11 10 9 37 37 H 1.08006 * 119.92582 * 180.27796 * 12 11 10 38 38 H 1.08010 * 119.96214 * 179.71804 * 13 12 11 39 39 H 0.97004 * 120.00274 * 180.02562 * 19 18 16 40 40 H 1.08004 * 120.06624 * 359.95246 * 24 10 9 41 41 H 1.08000 * 126.61323 * 179.81295 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.3768 -1.9641 -1.2912 6 6 2.7748 -2.2518 -2.5567 7 6 3.2405 -3.5607 -3.0462 8 8 3.5769 -3.6910 -4.2078 9 7 3.2937 -4.6140 -2.2070 10 6 3.6307 -5.8806 -2.6950 11 6 3.2441 -6.2583 -3.9755 12 6 3.5814 -7.5073 -4.4601 13 6 4.2936 -8.3890 -3.6698 14 6 4.6783 -8.0195 -2.3872 15 8 5.3785 -8.8862 -1.6117 16 6 5.6141 -8.5143 -0.3373 17 1 5.1770 -7.6058 0.0497 18 6 6.4174 -9.2986 0.4766 19 7 6.6468 -8.9360 1.7202 20 14 7.1737 -10.8699 -0.1929 21 1 8.5001 -10.5663 -0.7880 22 1 7.3389 -11.8492 0.9111 23 1 6.2836 -11.4432 -1.2342 24 6 4.3463 -6.7635 -1.8994 25 6 2.6707 -1.1068 -3.2914 26 7 2.2044 -0.1438 -2.4531 27 1 2.0262 0.7809 -2.6860 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 -0.8900 33 1 1.6765 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 3.0982 -4.4937 -1.2646 36 1 2.6836 -5.5730 -4.5939 37 1 3.2837 -7.7969 -5.4571 38 1 4.5518 -9.3664 -4.0499 39 1 7.2090 -9.4844 2.2894 40 1 4.6446 -6.4738 -0.9027 41 1 2.9118 -0.9885 -4.3375 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081263798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:36 Heat of formation + Delta-G solvation = -9.135988 kcal Electronic energy + Delta-G solvation = -24824.802635 eV Core-core repulsion = 21091.257884 eV Total energy + Delta-G solvation = -3733.544751 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.30428 -41.44257 -40.30730 -38.18335 -36.31367 -35.69260 -34.41485 -33.79913 -31.17529 -30.74920 -29.83285 -28.06109 -27.22927 -25.24697 -24.04607 -23.41362 -22.75113 -21.38045 -20.99036 -19.86424 -19.35441 -19.15022 -17.67634 -17.18033 -16.97291 -16.65566 -16.29278 -15.92705 -15.73490 -15.60390 -15.41184 -15.22251 -15.08775 -14.74598 -14.64421 -14.21045 -14.00850 -13.81550 -13.30970 -13.04414 -12.86352 -12.69294 -12.54194 -12.46983 -12.15397 -12.07097 -11.92971 -11.56961 -11.46005 -11.34054 -11.24777 -11.06744 -10.82445 -9.68142 -9.39975 -8.93040 -8.49441 -6.22728 0.17907 0.60381 0.70428 1.30753 1.32995 1.37896 1.54148 1.82513 2.17637 2.29771 2.37046 2.78330 3.03945 3.08133 3.11900 3.73099 3.83054 4.08896 4.13217 4.16447 4.29732 4.34498 4.41208 4.44859 4.60226 4.66619 4.72367 4.74115 4.90482 4.91457 4.93491 5.13112 5.26536 5.29630 5.34488 5.35505 5.39443 5.47523 5.61408 5.74348 5.88216 6.17513 6.25546 6.41355 6.77171 6.84437 7.05238 7.56718 8.62172 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.002868 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.355785 B = 9761.188569 C =11088.579040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.013 4.013 3 C -0.148 4.148 4 C 0.228 3.772 5 N -0.498 5.498 6 C -0.100 4.100 7 C 0.602 3.398 8 O -0.551 6.551 9 N -0.657 5.657 10 C 0.181 3.819 11 C -0.191 4.191 12 C -0.049 4.049 13 C -0.199 4.199 14 C 0.142 3.858 15 O -0.237 6.237 16 C -0.400 4.400 17 H 0.078 0.922 18 C 0.011 3.989 19 N -0.922 5.922 20 Si 0.972 3.028 21 H -0.267 1.267 22 H -0.266 1.266 23 H -0.259 1.259 24 C -0.257 4.257 25 C 0.065 3.935 26 N -0.541 5.541 27 H 0.444 0.556 28 H 0.065 0.935 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.418 0.582 36 H 0.133 0.867 37 H 0.165 0.835 38 H 0.139 0.861 39 H 0.285 0.715 40 H 0.113 0.887 41 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.955 22.786 -8.037 27.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 C -0.206 4.206 4 C -0.039 4.039 5 N -0.218 5.218 6 C -0.228 4.228 7 C 0.392 3.608 8 O -0.429 6.429 9 N -0.300 5.300 10 C 0.086 3.914 11 C -0.212 4.212 12 C -0.067 4.067 13 C -0.219 4.219 14 C 0.092 3.908 15 O -0.145 6.145 16 C -0.477 4.477 17 H 0.096 0.904 18 C -0.188 4.188 19 N -0.563 5.563 20 Si 0.794 3.206 21 H -0.192 1.192 22 H -0.191 1.191 23 H -0.183 1.183 24 C -0.279 4.279 25 C -0.077 4.077 26 N -0.146 5.146 27 H 0.288 0.712 28 H 0.084 0.916 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.256 0.744 36 H 0.151 0.849 37 H 0.183 0.817 38 H 0.157 0.843 39 H 0.095 0.905 40 H 0.131 0.869 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -12.555 21.864 -8.039 26.463 hybrid contribution 0.470 0.348 0.274 0.646 sum -12.085 22.212 -7.764 26.452 Atomic orbital electron populations 1.21831 0.92210 1.02149 1.03704 1.19829 0.96925 0.96055 0.90510 1.21902 1.01322 0.92949 1.04388 1.23936 1.02013 0.88901 0.89012 1.70486 1.17156 1.14782 1.19370 1.20275 1.15295 0.94628 0.92572 1.17350 0.76142 0.82699 0.84638 1.90767 1.49481 1.84744 1.17945 1.43340 1.67465 1.05963 1.13255 1.17565 0.95175 0.84235 0.94384 1.20941 1.06619 0.98239 0.95381 1.21010 0.94562 0.91421 0.99700 1.20572 1.06622 1.02562 0.92139 1.19348 0.91524 0.88426 0.91536 1.83551 1.66159 1.42040 1.22704 1.20676 1.31845 1.10907 0.84233 0.90441 1.25298 0.96283 1.02367 0.94822 1.69733 1.38681 1.40747 1.07120 0.85204 0.79028 0.77881 0.78533 1.19249 1.19099 1.18321 1.20888 1.08372 0.96127 1.02503 1.23073 0.99201 0.86995 0.98417 1.43160 1.49190 1.13472 1.08736 0.71232 0.91577 0.89498 0.93717 0.88677 0.90836 0.89425 0.92671 0.74448 0.84938 0.81724 0.84341 0.90544 0.86875 0.76488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.18 71.98 0.66 -0.66 16 2 C -0.01 -0.15 3.39 -11.54 -0.04 -0.19 16 3 C -0.15 -0.85 8.94 71.98 0.64 -0.20 16 4 C 0.23 4.10 6.86 137.97 0.95 5.05 16 5 N -0.50 -13.37 11.00 -176.81 -1.95 -15.32 16 6 C -0.10 -2.79 6.97 40.51 0.28 -2.51 16 7 C 0.60 20.90 7.54 86.63 0.65 21.56 16 8 O -0.55 -20.90 14.59 -4.13 -0.06 -20.96 16 9 N -0.66 -24.43 5.33 -306.58 -1.63 -26.06 16 10 C 0.18 7.54 6.26 38.16 0.24 7.78 16 11 C -0.19 -7.22 8.65 22.43 0.19 -7.03 16 12 C -0.05 -1.67 10.03 22.23 0.22 -1.45 16 13 C -0.20 -8.02 9.99 22.41 0.22 -7.79 16 14 C 0.14 6.97 6.64 22.56 0.15 7.12 16 15 O -0.24 -13.23 8.58 -22.81 -0.20 -13.42 16 16 C -0.40 -24.19 9.90 67.92 0.67 -23.52 16 17 H 0.08 4.94 5.53 -2.92 -0.02 4.92 16 18 C 0.01 0.64 5.49 84.84 0.47 1.10 16 19 N -0.92 -56.00 13.96 21.62 0.30 -55.69 16 20 Si 0.97 46.16 28.62 68.60 1.96 48.12 16 21 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 24 C -0.26 -12.32 9.04 22.51 0.20 -12.12 16 25 C 0.07 1.19 11.77 83.64 0.98 2.17 16 26 N -0.54 -6.61 5.87 -185.35 -1.09 -7.70 16 27 H 0.44 1.52 8.14 -92.70 -0.75 0.77 16 28 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.07 0.13 7.41 -2.39 -0.02 0.11 16 33 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 34 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.42 14.88 8.54 -92.71 -0.79 14.08 16 36 H 0.13 4.76 6.44 -2.91 -0.02 4.74 16 37 H 0.17 4.16 8.06 -2.91 -0.02 4.13 16 38 H 0.14 4.96 8.06 -2.91 -0.02 4.93 16 39 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 40 H 0.11 5.87 5.72 -2.91 -0.02 5.86 16 41 H 0.22 2.79 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -78.32 353.07 3.39 -74.93 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: -0.45 Total: 26.80 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 6.50 Total: -10.70 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -4.37 Total: -104.77 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.26 Total: -34.38 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.96 Total: 48.12 kcal Total: -78.32 3.39 -74.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081263798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.796 kcal (2) G-P(sol) polarization free energy of solvation -78.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds