Wall clock time and date at job start Tue Mar 31 2020 10:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47033 * 2 1 4 4 C 1.50707 * 109.47022 * 119.99571 * 2 1 3 5 5 C 1.38303 * 119.96478 * 299.98112 * 4 2 1 6 6 C 1.38263 * 120.14285 * 180.02562 * 5 4 2 7 7 C 1.38138 * 120.06738 * 0.02562 * 6 5 4 8 8 C 1.38853 * 119.92685 * 359.75896 * 7 6 5 9 9 N 1.40070 * 120.07097 * 180.27223 * 8 7 6 10 10 C 1.36143 * 124.92704 * 359.92742 * 9 8 7 11 11 C 1.35740 * 107.06989 * 179.89838 * 10 9 8 12 12 O 1.36079 * 127.25733 * 180.16263 * 11 10 9 13 13 C 1.41874 * 105.47754 * 0.34437 * 11 10 9 14 14 C 1.47382 * 126.44816 * 179.77907 * 13 11 10 15 15 O 1.21630 * 119.99944 * 359.97438 * 14 13 11 16 16 N 1.34776 * 119.99976 * 179.97438 * 14 13 11 17 17 C 1.36908 * 120.00075 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99829 * 359.97438 * 17 16 14 19 19 C 1.39010 * 120.00260 * 180.02562 * 17 16 14 20 20 N 1.31377 * 120.00405 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99888 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47323 * 90.00072 * 21 19 17 23 23 H 1.48499 * 109.47335 * 210.00312 * 21 19 17 24 24 H 1.48505 * 109.47164 * 330.00307 * 21 19 17 25 25 N 1.28456 * 124.93365 * 180.22674 * 9 8 7 26 26 C 1.38088 * 119.96315 * 120.00517 * 4 2 1 27 27 H 1.08997 * 109.47834 * 300.00636 * 1 2 3 28 28 H 1.09006 * 109.47065 * 60.00226 * 1 2 3 29 29 H 1.08996 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47579 * 239.99843 * 2 1 3 31 31 H 1.08997 * 109.46878 * 299.99574 * 3 2 1 32 32 H 1.08995 * 109.47519 * 59.99812 * 3 2 1 33 33 H 1.09006 * 109.47088 * 179.97438 * 3 2 1 34 34 H 1.08004 * 119.93098 * 0.02562 * 5 4 2 35 35 H 1.07996 * 119.96860 * 180.02562 * 6 5 4 36 36 H 1.07990 * 120.03704 * 180.02562 * 7 6 5 37 37 H 1.08001 * 126.46267 * 0.02977 * 10 9 8 38 38 H 0.96693 * 113.99662 * 270.21921 * 12 11 10 39 39 H 0.97003 * 119.99738 * 359.97438 * 16 14 13 40 40 H 0.97005 * 120.00530 * 179.97438 * 20 19 17 41 41 H 1.08002 * 120.03354 * 359.94842 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 6 1.6980 -0.2369 2.4863 6 6 2.1573 -0.8854 3.6178 7 6 2.9523 -2.0086 3.4970 8 6 3.2859 -2.4890 2.2377 9 7 4.0872 -3.6310 2.1117 10 6 4.5940 -4.3463 3.1533 11 6 5.3084 -5.3712 2.6226 12 8 5.9863 -6.3392 3.2974 13 6 5.2030 -5.2179 1.2162 14 6 5.8135 -6.0849 0.1926 15 8 6.4855 -7.0416 0.5282 16 7 5.6273 -5.8177 -1.1152 17 6 6.1940 -6.6234 -2.0660 18 1 6.7906 -7.4730 -1.7680 19 6 6.0024 -6.3475 -3.4149 20 7 6.5466 -7.1204 -4.3273 21 14 4.9710 -4.8778 -3.9303 22 1 5.8434 -3.6837 -4.0651 23 1 4.3182 -5.1635 -5.2331 24 1 3.9313 -4.6177 -2.9022 25 7 4.4549 -4.1522 0.9968 26 6 2.8262 -1.8330 1.1031 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.0769 0.6413 2.5834 35 1 1.8942 -0.5135 4.5969 36 1 3.3104 -2.5150 4.3810 37 1 4.4523 -4.1388 4.2037 38 1 6.9054 -6.1117 3.4935 39 1 5.0911 -5.0549 -1.3827 40 1 6.4126 -6.9281 -5.2686 41 1 3.0864 -2.2024 0.1222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126424407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:47 Heat of formation + Delta-G solvation = 28.909199 kcal Electronic energy + Delta-G solvation = -25417.526865 eV Core-core repulsion = 21685.631877 eV Total energy + Delta-G solvation = -3731.894988 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.68428 -39.82551 -38.06745 -36.96346 -35.82394 -33.99184 -32.95306 -31.72016 -30.97660 -29.57974 -28.99944 -27.44623 -25.63862 -23.98757 -23.42472 -21.95361 -21.40597 -19.92241 -19.36934 -18.74649 -17.91730 -17.27917 -16.39136 -16.13682 -16.01020 -15.56010 -15.00375 -14.78957 -14.24745 -14.08016 -13.97484 -13.87985 -13.72679 -13.53757 -13.42018 -12.78796 -12.71498 -12.44147 -12.35345 -12.21241 -12.01140 -11.48211 -11.44546 -11.23879 -11.11635 -10.97273 -10.58386 -10.15101 -9.97929 -9.97503 -9.59233 -9.15072 -8.94420 -8.73008 -8.24040 -8.10821 -6.40545 -3.85075 0.60520 1.00739 2.11999 2.21805 2.38723 3.07720 3.10935 3.14345 3.46221 4.06695 4.10828 4.22231 4.26997 4.43749 4.61116 4.67734 4.78723 4.87812 4.87842 4.91535 4.95065 5.11351 5.25657 5.27403 5.31286 5.38897 5.51135 5.55272 5.62197 5.64781 5.77310 5.84976 5.92187 5.93471 6.02695 6.07773 6.27197 6.44198 6.50749 6.99136 7.50269 7.92221 8.01083 8.10371 8.55967 8.87311 9.36385 9.80159 10.71020 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010704 B = 0.004493 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.132417 B = 6230.649844 C = 8657.487889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.061 4.061 3 C -0.144 4.144 4 C -0.053 4.053 5 C -0.123 4.123 6 C -0.093 4.093 7 C -0.139 4.139 8 C 0.155 3.845 9 N -0.240 5.240 10 C -0.049 4.049 11 C 0.049 3.951 12 O -0.451 6.451 13 C 0.018 3.982 14 C 0.515 3.485 15 O -0.563 6.563 16 N -0.559 5.559 17 C -0.300 4.300 18 H 0.125 0.875 19 C 0.046 3.954 20 N -0.867 5.867 21 Si 0.874 3.126 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.263 1.263 25 N -0.272 5.272 26 C -0.112 4.112 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.185 0.815 38 H 0.386 0.614 39 H 0.378 0.622 40 H 0.277 0.723 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.744 19.570 14.236 26.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 C -0.201 4.201 4 C -0.054 4.054 5 C -0.142 4.142 6 C -0.112 4.112 7 C -0.159 4.159 8 C 0.064 3.936 9 N -0.023 5.023 10 C -0.189 4.189 11 C -0.006 4.006 12 O -0.256 6.256 13 C -0.145 4.145 14 C 0.300 3.700 15 O -0.444 6.444 16 N -0.197 5.197 17 C -0.429 4.429 18 H 0.143 0.857 19 C -0.159 4.159 20 N -0.506 5.506 21 Si 0.700 3.300 22 H -0.193 1.193 23 H -0.198 1.198 24 H -0.188 1.188 25 N -0.105 5.105 26 C -0.132 4.132 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.202 0.798 38 H 0.241 0.759 39 H 0.212 0.788 40 H 0.087 0.913 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.241 19.202 13.362 26.403 hybrid contribution 0.034 0.756 0.200 0.783 sum -12.208 19.958 13.562 27.042 Atomic orbital electron populations 1.21856 0.93962 1.02290 1.02003 1.20188 0.96212 0.96206 0.95307 1.21857 1.01476 0.94758 1.02003 1.19755 0.96032 0.94351 0.95240 1.21046 1.00904 1.00528 0.91687 1.20920 0.96696 0.94519 0.99040 1.20824 1.01455 0.98579 0.95053 1.17607 0.94584 0.86218 0.95205 1.42173 1.36473 1.19974 1.03633 1.22778 1.05011 0.96036 0.95035 1.18122 1.01650 0.91997 0.88832 1.84880 1.27821 1.38207 1.74702 1.23223 1.00784 0.95055 0.95418 1.16167 0.86427 0.86238 0.81137 1.90691 1.43410 1.30116 1.80209 1.42130 1.45396 1.26962 1.05175 1.19548 1.28595 1.09702 0.85088 0.85735 1.25076 0.97475 0.97904 0.95414 1.69605 1.42408 1.37268 1.01282 0.86711 0.81002 0.82915 0.79402 1.19252 1.19831 1.18828 1.73705 1.16247 1.10936 1.09651 1.20913 0.98391 0.95518 0.98353 0.92416 0.92127 0.92335 0.89896 0.92132 0.92419 0.92340 0.85511 0.84957 0.84997 0.79831 0.75913 0.78783 0.91276 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.01 37.15 0.33 -0.70 16 2 C -0.06 -0.51 3.09 -91.77 -0.28 -0.79 16 3 C -0.14 -1.02 9.01 37.16 0.33 -0.69 16 4 C -0.05 -0.52 4.78 -104.65 -0.50 -1.02 16 5 C -0.12 -1.00 8.71 -39.55 -0.34 -1.34 16 6 C -0.09 -0.73 10.04 -39.61 -0.40 -1.13 16 7 C -0.14 -1.35 9.43 -39.39 -0.37 -1.72 16 8 C 0.16 2.03 6.66 -83.62 -0.56 1.47 16 9 N -0.24 -3.82 3.52 -10.40 -0.04 -3.85 16 10 C -0.05 -0.71 10.81 -16.53 -0.18 -0.89 16 11 C 0.05 0.90 7.35 -39.09 -0.29 0.61 16 12 O -0.45 -7.78 13.20 -22.25 -0.29 -8.08 16 13 C 0.02 0.39 7.13 -82.67 -0.59 -0.20 16 14 C 0.52 13.29 7.76 -12.54 -0.10 13.19 16 15 O -0.56 -16.18 16.10 2.99 0.05 -16.14 16 16 N -0.56 -14.63 5.08 -11.97 -0.06 -14.69 16 17 C -0.30 -8.73 10.16 -15.00 -0.15 -8.88 16 18 H 0.13 4.05 7.38 -52.48 -0.39 3.66 16 19 C 0.05 1.29 5.50 -17.46 -0.10 1.20 16 20 N -0.87 -25.21 13.95 55.50 0.77 -24.44 16 21 Si 0.87 19.94 27.74 -169.99 -4.71 15.22 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.26 -5.71 6.52 56.52 0.37 -5.34 16 25 N -0.27 -5.28 10.84 33.46 0.36 -4.92 16 26 C -0.11 -1.42 9.22 -39.39 -0.36 -1.78 16 27 H 0.06 0.36 7.39 -51.93 -0.38 -0.03 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.35 7.38 -51.93 -0.38 -0.03 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.13 0.75 7.09 -52.48 -0.37 0.38 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 1.01 6.65 -52.49 -0.35 0.66 16 37 H 0.18 1.82 6.96 -52.49 -0.37 1.46 16 38 H 0.39 4.86 9.06 45.56 0.41 5.27 16 39 H 0.38 9.11 5.47 -40.82 -0.22 8.89 16 40 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.14 1.97 7.53 -52.49 -0.40 1.58 16 LS Contribution 351.54 15.07 5.30 5.30 Total: -1.00 -35.07 351.54 -6.31 -41.38 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -4.14 Total: 12.88 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -3.55 Total: -2.67 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 1.04 Total: -47.89 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.25 Total: -24.21 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.71 Total: 15.22 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.07 -6.31 -41.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126424407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.291 kcal (2) G-P(sol) polarization free energy of solvation -35.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds