Wall clock time and date at job start Tue Mar 31 2020 10:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47033 * 2 1 4 4 C 1.50707 * 109.47022 * 119.99571 * 2 1 3 5 5 C 1.38303 * 119.96478 * 299.98112 * 4 2 1 6 6 C 1.38263 * 120.14285 * 180.02562 * 5 4 2 7 7 C 1.38138 * 120.06738 * 0.02562 * 6 5 4 8 8 C 1.38853 * 119.92685 * 359.75896 * 7 6 5 9 9 N 1.40070 * 120.07097 * 180.27223 * 8 7 6 10 10 C 1.36143 * 124.92704 * 359.92742 * 9 8 7 11 11 C 1.35740 * 107.06989 * 179.89838 * 10 9 8 12 12 O 1.36079 * 127.25733 * 180.16263 * 11 10 9 13 13 C 1.41874 * 105.47754 * 0.34437 * 11 10 9 14 14 C 1.47382 * 126.44816 * 179.77907 * 13 11 10 15 15 O 1.21630 * 119.99944 * 359.97438 * 14 13 11 16 16 N 1.34776 * 119.99976 * 179.97438 * 14 13 11 17 17 C 1.36908 * 120.00075 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99829 * 359.97438 * 17 16 14 19 19 C 1.39010 * 120.00260 * 180.02562 * 17 16 14 20 20 N 1.31377 * 120.00405 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99888 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47323 * 90.00072 * 21 19 17 23 23 H 1.48499 * 109.47335 * 210.00312 * 21 19 17 24 24 H 1.48505 * 109.47164 * 330.00307 * 21 19 17 25 25 N 1.28456 * 124.93365 * 180.22674 * 9 8 7 26 26 C 1.38088 * 119.96315 * 120.00517 * 4 2 1 27 27 H 1.08997 * 109.47834 * 300.00636 * 1 2 3 28 28 H 1.09006 * 109.47065 * 60.00226 * 1 2 3 29 29 H 1.08996 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47579 * 239.99843 * 2 1 3 31 31 H 1.08997 * 109.46878 * 299.99574 * 3 2 1 32 32 H 1.08995 * 109.47519 * 59.99812 * 3 2 1 33 33 H 1.09006 * 109.47088 * 179.97438 * 3 2 1 34 34 H 1.08004 * 119.93098 * 0.02562 * 5 4 2 35 35 H 1.07996 * 119.96860 * 180.02562 * 6 5 4 36 36 H 1.07990 * 120.03704 * 180.02562 * 7 6 5 37 37 H 1.08001 * 126.46267 * 0.02977 * 10 9 8 38 38 H 0.96693 * 113.99662 * 270.21921 * 12 11 10 39 39 H 0.97003 * 119.99738 * 359.97438 * 16 14 13 40 40 H 0.97005 * 120.00530 * 179.97438 * 20 19 17 41 41 H 1.08002 * 120.03354 * 359.94842 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7103 1.2306 5 6 1.6980 -0.2369 2.4863 6 6 2.1573 -0.8854 3.6178 7 6 2.9523 -2.0086 3.4970 8 6 3.2859 -2.4890 2.2377 9 7 4.0872 -3.6310 2.1117 10 6 4.5940 -4.3463 3.1533 11 6 5.3084 -5.3712 2.6226 12 8 5.9863 -6.3392 3.2974 13 6 5.2030 -5.2179 1.2162 14 6 5.8135 -6.0849 0.1926 15 8 6.4855 -7.0416 0.5282 16 7 5.6273 -5.8177 -1.1152 17 6 6.1940 -6.6234 -2.0660 18 1 6.7906 -7.4730 -1.7680 19 6 6.0024 -6.3475 -3.4149 20 7 6.5466 -7.1204 -4.3273 21 14 4.9710 -4.8778 -3.9303 22 1 5.8434 -3.6837 -4.0651 23 1 4.3182 -5.1635 -5.2331 24 1 3.9313 -4.6177 -2.9022 25 7 4.4549 -4.1522 0.9968 26 6 2.8262 -1.8330 1.1031 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.0769 0.6413 2.5834 35 1 1.8942 -0.5135 4.5969 36 1 3.3104 -2.5150 4.3810 37 1 4.4523 -4.1388 4.2037 38 1 6.9054 -6.1117 3.4935 39 1 5.0911 -5.0549 -1.3827 40 1 6.4126 -6.9281 -5.2686 41 1 3.0864 -2.2024 0.1222 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126424407.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:46 Heat of formation + Delta-G solvation = 2.960042 kcal Electronic energy + Delta-G solvation = -25418.652105 eV Core-core repulsion = 21685.631877 eV Total energy + Delta-G solvation = -3733.020228 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.00625 -40.68159 -40.02015 -38.27863 -36.57680 -36.13824 -34.16744 -33.68987 -31.97824 -30.67863 -30.09308 -27.97914 -27.50081 -25.20252 -24.47761 -22.97270 -22.63455 -21.32032 -20.86367 -20.51329 -19.21164 -18.42769 -17.85137 -17.40585 -17.10193 -16.91824 -16.40717 -15.75156 -15.51996 -15.50094 -15.33771 -15.18304 -14.80239 -14.68836 -14.55184 -14.45543 -14.26119 -13.40695 -13.11693 -13.11279 -12.94786 -12.88151 -12.58756 -12.53026 -12.10406 -12.08542 -11.77793 -11.69005 -11.60729 -11.46816 -11.06459 -10.82019 -10.38929 -10.19945 -9.87280 -9.22491 -8.55245 -6.12260 -0.35178 0.28202 0.62963 1.08580 1.22349 1.23401 1.27994 1.34423 2.11116 2.27192 2.61396 2.70184 3.06930 3.12808 3.45719 3.72283 3.74162 3.86282 3.96904 4.02918 4.20248 4.25698 4.29352 4.40287 4.46706 4.52658 4.69220 4.82517 4.86947 4.98855 4.99443 4.99822 5.17776 5.21389 5.26744 5.39378 5.40361 5.42767 5.54722 5.71023 5.80659 5.99031 6.39580 6.63912 6.72385 6.78405 7.22165 7.73554 8.61089 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.010704 B = 0.004493 C = 0.003233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.132417 B = 6230.649844 C = 8657.487889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 C -0.140 4.140 4 C -0.059 4.059 5 C -0.109 4.109 6 C -0.084 4.084 7 C -0.127 4.127 8 C 0.111 3.889 9 N -0.225 5.225 10 C -0.015 4.015 11 C 0.029 3.971 12 O -0.464 6.464 13 C -0.031 4.031 14 C 0.520 3.480 15 O -0.603 6.603 16 N -0.564 5.564 17 C -0.333 4.333 18 H 0.070 0.930 19 C 0.002 3.998 20 N -0.912 5.912 21 Si 0.950 3.050 22 H -0.252 1.252 23 H -0.258 1.258 24 H -0.250 1.250 25 N -0.280 5.280 26 C -0.133 4.133 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.158 0.842 35 H 0.174 0.826 36 H 0.160 0.840 37 H 0.241 0.759 38 H 0.403 0.597 39 H 0.389 0.611 40 H 0.285 0.715 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.896 24.211 17.285 33.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.082 4.082 3 C -0.197 4.197 4 C -0.059 4.059 5 C -0.127 4.127 6 C -0.102 4.102 7 C -0.147 4.147 8 C 0.021 3.979 9 N -0.008 5.008 10 C -0.155 4.155 11 C -0.027 4.027 12 O -0.272 6.272 13 C -0.191 4.191 14 C 0.307 3.693 15 O -0.487 6.487 16 N -0.203 5.203 17 C -0.462 4.462 18 H 0.088 0.912 19 C -0.200 4.200 20 N -0.551 5.551 21 Si 0.769 3.231 22 H -0.176 1.176 23 H -0.182 1.182 24 H -0.174 1.174 25 N -0.115 5.115 26 C -0.153 4.153 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.176 0.824 35 H 0.191 0.809 36 H 0.178 0.822 37 H 0.257 0.743 38 H 0.260 0.740 39 H 0.224 0.776 40 H 0.095 0.905 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.385 23.851 16.394 32.777 hybrid contribution 0.909 -0.515 -0.525 1.169 sum -14.476 23.337 15.869 31.717 Atomic orbital electron populations 1.21841 0.92794 1.01840 1.03310 1.20226 0.97120 0.96742 0.94140 1.21841 1.00711 0.93892 1.03297 1.19941 0.95575 0.93584 0.96845 1.21488 0.99645 1.00778 0.90801 1.21431 0.94922 0.93168 1.00722 1.21234 1.00485 0.98721 0.94235 1.18054 0.96547 0.86299 0.96960 1.42568 1.35122 1.20069 1.03014 1.23414 1.01935 0.93473 0.96726 1.18302 1.03214 0.93552 0.87599 1.84826 1.29213 1.38870 1.74244 1.22606 1.04023 0.96660 0.95810 1.16850 0.84908 0.85860 0.81672 1.90636 1.44865 1.32028 1.81196 1.41942 1.46154 1.27192 1.04996 1.19144 1.30413 1.09852 0.86823 0.91233 1.25959 0.98312 1.01228 0.94462 1.69733 1.43890 1.39473 1.02042 0.85579 0.79388 0.78492 0.79604 1.17592 1.18189 1.17398 1.73589 1.15942 1.10293 1.11717 1.20916 0.99947 0.97033 0.97423 0.90647 0.91329 0.93636 0.91793 0.91351 0.90656 0.93523 0.82408 0.80873 0.82204 0.74320 0.74015 0.77563 0.90466 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.01 71.98 0.65 -0.98 16 2 C -0.06 -0.94 3.09 -11.54 -0.04 -0.98 16 3 C -0.14 -1.59 9.01 71.98 0.65 -0.94 16 4 C -0.06 -1.00 4.78 -19.88 -0.10 -1.10 16 5 C -0.11 -1.20 8.71 22.29 0.19 -1.01 16 6 C -0.08 -0.80 10.04 22.25 0.22 -0.57 16 7 C -0.13 -1.80 9.43 22.39 0.21 -1.59 16 8 C 0.11 2.60 6.66 38.13 0.25 2.86 16 9 N -0.22 -6.75 3.52 -186.82 -0.66 -7.40 16 10 C -0.01 -0.39 10.81 83.44 0.90 0.52 16 11 C 0.03 1.04 7.35 22.59 0.17 1.20 16 12 O -0.46 -16.01 13.20 -92.29 -1.22 -17.23 16 13 C -0.03 -1.36 7.13 42.42 0.30 -1.06 16 14 C 0.52 28.59 7.76 86.65 0.67 29.26 16 15 O -0.60 -37.34 16.10 -1.97 -0.03 -37.37 16 16 N -0.56 -31.31 5.08 -310.02 -1.58 -32.88 16 17 C -0.33 -20.90 10.16 84.09 0.85 -20.05 16 18 H 0.07 5.01 7.38 -2.91 -0.02 4.99 16 19 C 0.00 0.12 5.50 84.95 0.47 0.58 16 20 N -0.91 -55.67 13.95 21.67 0.30 -55.37 16 21 Si 0.95 42.10 27.74 68.60 1.90 44.01 16 22 H -0.25 -10.52 7.11 99.48 0.71 -9.82 16 23 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 24 H -0.25 -10.41 6.52 99.48 0.65 -9.76 16 25 N -0.28 -10.94 10.84 -48.06 -0.52 -11.47 16 26 C -0.13 -3.22 9.22 22.39 0.21 -3.01 16 27 H 0.07 0.60 7.39 -2.39 -0.02 0.58 16 28 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 1.16 7.87 -2.39 -0.02 1.14 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.58 7.38 -2.39 -0.02 0.56 16 33 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.16 0.81 7.09 -2.91 -0.02 0.79 16 35 H 0.17 0.34 8.06 -2.91 -0.02 0.32 16 36 H 0.16 1.34 6.65 -2.92 -0.02 1.32 16 37 H 0.24 3.31 6.96 -2.91 -0.02 3.29 16 38 H 0.40 10.18 9.06 -74.06 -0.67 9.51 16 39 H 0.39 19.47 5.47 -92.71 -0.51 18.96 16 40 H 0.29 15.74 8.31 -92.70 -0.77 14.97 16 41 H 0.11 3.30 7.53 -2.91 -0.02 3.27 16 Total: -1.00 -85.63 351.54 3.68 -81.95 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.15 Total: 32.64 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.62 Total: 3.12 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -2.45 Total: -107.12 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -1.25 Total: -54.60 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.90 Total: 44.01 kcal Total: -85.63 3.68 -81.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126424407.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.911 kcal (2) G-P(sol) polarization free energy of solvation -85.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds