Wall clock time and date at job start Tue Mar 31 2020 11:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47603 * 2 1 4 4 H 1.08998 * 109.46839 * 305.00397 * 3 2 1 5 5 C 1.50697 * 109.47276 * 184.99690 * 3 2 1 6 6 H 1.07997 * 119.99905 * 239.99294 * 5 3 2 7 7 C 1.37878 * 119.99899 * 60.00179 * 5 3 2 8 8 N 1.31513 * 119.99914 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99922 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46693 * 90.00231 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99742 * 9 7 5 12 12 H 1.48498 * 109.47110 * 330.00327 * 9 7 5 13 13 N 1.46506 * 109.47086 * 64.99526 * 3 2 1 14 14 C 1.34772 * 120.00012 * 275.00851 * 13 3 2 15 15 O 1.21357 * 120.00182 * 359.97438 * 14 13 3 16 16 C 1.49338 * 119.99668 * 180.02562 * 14 13 3 17 17 O 1.21388 * 120.00417 * 359.97438 * 16 14 13 18 18 N 1.34782 * 119.99680 * 179.97438 * 16 14 13 19 19 C 1.39907 * 119.99547 * 174.72536 * 18 16 14 20 20 C 1.39465 * 119.88911 * 326.34766 * 19 18 16 21 21 C 1.37616 * 120.59922 * 179.74040 * 20 19 18 22 22 C 1.39150 * 120.02473 * 0.52245 * 21 20 19 23 23 N 1.37851 * 133.32908 * 179.75971 * 22 21 20 24 24 H 0.96995 * 125.06815 * 0.02562 * 23 22 21 25 25 C 1.36805 * 109.86671 * 179.97438 * 23 22 21 26 26 C 1.34237 * 109.94068 * 0.02562 * 25 23 22 27 27 C 1.40652 * 119.55521 * 359.75908 * 22 21 20 28 28 C 1.38274 * 119.88650 * 146.63326 * 19 18 16 29 29 H 1.09003 * 109.47202 * 59.99922 * 1 2 3 30 30 H 1.09002 * 109.47686 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47269 * 300.00373 * 1 2 3 32 32 H 1.09004 * 109.47269 * 239.99627 * 2 1 3 33 33 H 1.09003 * 109.47202 * 120.00078 * 2 1 3 34 34 H 0.97001 * 119.99897 * 179.97438 * 8 7 5 35 35 H 0.97003 * 119.99534 * 95.27213 * 13 3 2 36 36 H 0.96994 * 120.00354 * 354.71442 * 18 16 14 37 37 H 1.07995 * 119.70067 * 0.02562 * 20 19 18 38 38 H 1.08001 * 119.98519 * 180.30226 * 21 20 19 39 39 H 1.07994 * 125.03159 * 179.97438 * 25 23 22 40 40 H 1.08007 * 126.49302 * 179.97438 * 26 25 23 41 41 H 1.07994 * 120.20894 * 0.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0050 0.8810 -1.3816 10 1 6.5547 -0.3505 -0.7600 11 1 6.3831 0.9220 -2.8171 12 1 6.5570 2.0735 -0.6899 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3398 2.6326 0.4335 16 6 0.0403 3.3326 2.6428 17 8 0.8155 3.3648 3.5763 18 7 -1.1769 3.8999 2.7577 19 6 -1.5892 4.4282 3.9858 20 6 -1.1767 3.8269 5.1747 21 6 -1.5692 4.3374 6.3909 22 6 -2.3938 5.4570 6.4426 23 7 -2.9447 6.1790 7.4797 24 1 -2.8195 5.9852 8.4218 25 6 -3.6932 7.2104 6.9821 26 6 -3.6575 7.1961 5.6403 27 6 -2.8169 6.0630 5.2458 28 6 -2.4092 5.5411 4.0167 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8293 -0.0613 -2.9497 35 1 2.2734 2.1266 1.9965 36 1 -1.7669 3.9421 1.9890 37 1 -0.5397 2.9554 5.1406 38 1 -1.2399 3.8668 7.3054 39 1 -4.2336 7.9290 7.5802 40 1 -4.1546 7.8888 4.9771 41 1 -2.7325 6.0035 3.0959 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128159031.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:34 Heat of formation + Delta-G solvation = -9.168740 kcal Electronic energy + Delta-G solvation = -25170.682950 eV Core-core repulsion = 21437.136778 eV Total energy + Delta-G solvation = -3733.546171 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.41820 -40.40329 -38.53186 -36.92088 -35.35451 -34.05012 -32.40332 -32.01833 -30.98168 -28.95918 -28.75057 -27.23304 -24.71561 -23.07353 -22.95193 -21.66704 -20.90060 -20.05493 -19.46953 -18.65805 -18.02950 -17.24847 -16.43290 -16.05363 -15.79595 -15.26216 -15.10088 -14.63416 -14.42272 -14.16953 -13.94435 -13.78702 -13.41278 -13.24551 -12.90990 -12.75435 -12.70530 -12.16739 -11.97922 -11.58759 -11.33392 -11.22006 -11.09278 -10.97459 -10.84276 -10.35022 -10.26239 -10.09282 -9.79195 -9.69764 -9.12903 -9.02370 -8.56365 -8.09085 -8.02217 -7.67242 -6.16936 -4.26514 0.94796 1.29654 2.00332 2.53987 2.73225 2.95688 3.24121 3.31139 3.34388 3.63820 3.87593 4.12868 4.34645 4.55607 4.65283 4.97096 5.09110 5.14698 5.16900 5.27624 5.36510 5.44466 5.74459 5.93863 6.01835 6.24527 6.32246 6.36332 6.37406 6.56304 6.56903 6.59670 6.95431 6.98248 7.05485 7.16521 7.25652 7.28360 7.31078 7.52009 7.64479 7.79297 7.97944 8.09008 8.46266 8.63562 8.87414 9.40265 10.88437 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.029737 B = 0.002516 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.374645 B =11127.729422 C =11472.158167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.903 3.097 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.668 5.668 14 C 0.494 3.506 15 O -0.530 6.530 16 C 0.507 3.493 17 O -0.508 6.508 18 N -0.649 5.649 19 C 0.128 3.872 20 C -0.093 4.093 21 C -0.112 4.112 22 C 0.081 3.919 23 N -0.598 5.598 24 H 0.414 0.586 25 C 0.050 3.950 26 C -0.206 4.206 27 C -0.091 4.091 28 C -0.100 4.100 29 H 0.052 0.948 30 H 0.026 0.974 31 H 0.035 0.965 32 H 0.103 0.897 33 H 0.034 0.966 34 H 0.265 0.735 35 H 0.402 0.598 36 H 0.422 0.578 37 H 0.140 0.860 38 H 0.124 0.876 39 H 0.169 0.831 40 H 0.146 0.854 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.689 10.048 16.920 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.317 5.317 14 C 0.273 3.727 15 O -0.408 6.408 16 C 0.289 3.711 17 O -0.382 6.382 18 N -0.296 5.296 19 C 0.033 3.967 20 C -0.114 4.114 21 C -0.134 4.134 22 C -0.025 4.025 23 N -0.202 5.202 24 H 0.251 0.749 25 C -0.077 4.077 26 C -0.232 4.232 27 C -0.096 4.096 28 C -0.121 4.121 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.121 0.879 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.236 0.764 36 H 0.260 0.740 37 H 0.157 0.843 38 H 0.142 0.858 39 H 0.186 0.814 40 H 0.164 0.836 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.594 9.870 16.779 23.743 hybrid contribution 1.007 -0.025 0.343 1.064 sum -12.587 9.845 17.122 23.421 Atomic orbital electron populations 1.21855 0.98284 0.98408 1.01063 1.21964 0.92664 0.99398 1.02758 1.19015 0.94762 0.89398 0.80147 0.92740 1.21209 0.90332 1.39372 1.06556 0.91772 1.24872 0.98812 0.94631 0.95242 1.69883 1.35246 1.37435 1.09351 0.86410 0.84572 0.78571 0.77374 1.20469 1.21039 1.19765 1.46459 1.13339 1.52604 1.19274 1.19607 0.84506 0.81478 0.87108 1.90741 1.51161 1.59528 1.39382 1.20970 0.81487 0.78905 0.89696 1.90732 1.50431 1.56503 1.40517 1.43205 1.17285 1.57303 1.11847 1.17432 0.99373 0.94569 0.85282 1.20852 1.00132 1.00413 0.90011 1.19856 0.99792 0.95577 0.98132 1.18282 1.00235 0.96401 0.87602 1.41787 1.44335 1.26209 1.07841 0.74943 1.21787 0.98153 0.92841 0.94888 1.21666 1.06255 1.01148 0.94083 1.18893 1.01351 0.97655 0.91724 1.20192 1.00569 0.94382 0.96997 0.92930 0.95492 0.94595 0.87854 0.94675 0.92452 0.76402 0.74044 0.84251 0.85838 0.81398 0.83644 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.15 0.32 -2.65 16 2 C -0.13 -3.05 5.45 -26.74 -0.15 -3.20 16 3 C 0.27 6.58 2.24 -69.08 -0.15 6.43 16 4 H 0.05 1.52 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -14.00 8.73 -34.44 -0.30 -14.30 16 6 H 0.06 1.63 7.73 -52.49 -0.41 1.22 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.12 11.29 55.43 0.63 -23.49 16 9 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 N -0.67 -14.10 5.02 -55.40 -0.28 -14.38 16 14 C 0.49 9.73 6.45 -11.64 -0.08 9.66 16 15 O -0.53 -11.24 13.62 5.49 0.07 -11.16 16 16 C 0.51 8.68 7.62 -11.64 -0.09 8.59 16 17 O -0.51 -9.34 14.17 5.46 0.08 -9.26 16 18 N -0.65 -9.28 5.32 -10.28 -0.05 -9.34 16 19 C 0.13 1.75 6.27 -83.70 -0.52 1.22 16 20 C -0.09 -1.26 8.62 -39.35 -0.34 -1.60 16 21 C -0.11 -1.28 10.06 -39.47 -0.40 -1.68 16 22 C 0.08 0.90 7.27 -83.91 -0.61 0.29 16 23 N -0.60 -4.66 6.08 -10.62 -0.06 -4.72 16 24 H 0.41 1.94 8.96 -40.82 -0.37 1.58 16 25 C 0.05 0.35 11.81 -16.74 -0.20 0.15 16 26 C -0.21 -1.88 11.08 -37.66 -0.42 -2.30 16 27 C -0.09 -1.07 6.37 -105.14 -0.67 -1.73 16 28 C -0.10 -1.21 10.01 -39.05 -0.39 -1.60 16 29 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.03 0.74 5.65 -51.93 -0.29 0.45 16 32 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.40 7.98 8.00 -40.82 -0.33 7.65 16 36 H 0.42 5.36 8.29 -40.82 -0.34 5.02 16 37 H 0.14 2.00 6.41 -52.49 -0.34 1.67 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.17 0.55 8.06 -52.49 -0.42 0.13 16 40 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 41 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 345.39 15.07 5.20 5.20 Total: -1.00 -30.76 345.39 -8.37 -39.13 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -4.85 Total: 13.59 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -4.09 Total: -1.02 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 0.23 Total: -51.93 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: 0.15 Total: -20.42 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.76 -8.37 -39.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128159031.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.959 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds