Wall clock time and date at job start Tue Mar 31 2020 11:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50697 * 109.47101 * 185.40688 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73780 * 5 3 2 7 7 C 1.37872 * 119.99992 * 64.73749 * 5 3 2 8 8 N 1.31514 * 119.99982 * 187.26393 * 7 5 3 9 9 Si 1.86805 * 120.00136 * 7.25923 * 7 5 3 10 10 H 1.48495 * 109.46975 * 270.00052 * 9 7 5 11 11 H 1.48492 * 109.46822 * 30.00117 * 9 7 5 12 12 H 1.48497 * 109.47044 * 149.99974 * 9 7 5 13 13 N 1.46502 * 109.47339 * 65.40644 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00100 * 13 3 2 15 15 O 1.21276 * 120.00397 * 359.97438 * 14 13 3 16 16 C 1.50704 * 119.99462 * 179.97438 * 14 13 3 17 17 N 1.46502 * 109.46547 * 179.97438 * 16 14 13 18 18 C 1.34783 * 119.99598 * 179.97438 * 17 16 14 19 19 O 1.21540 * 120.00217 * 0.02562 * 18 17 16 20 20 C 1.47914 * 119.99582 * 180.02562 * 18 17 16 21 21 C 1.39625 * 119.99775 * 359.72697 * 20 18 17 22 22 C 1.37727 * 120.00493 * 179.76501 * 21 20 18 23 23 C 1.39675 * 119.99165 * 0.53357 * 22 21 20 24 24 C 1.43203 * 120.00251 * 179.70387 * 23 22 21 25 25 N 9.80966 * 109.64719 * 176.79241 * 14 1 2 26 26 C 1.39673 * 119.99159 * 359.71845 * 23 22 21 27 27 C 1.37730 * 119.99351 * 0.02562 * 26 23 22 28 28 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 29 29 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 30 30 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 32 32 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 33 33 H 0.96994 * 120.00225 * 354.93852 * 8 7 5 34 34 H 0.96998 * 120.00194 * 94.99566 * 13 3 2 35 35 H 1.09000 * 109.47349 * 299.99617 * 16 14 13 36 36 H 1.09002 * 109.47036 * 60.00566 * 16 14 13 37 37 H 0.96994 * 120.00819 * 0.02562 * 17 16 14 38 38 H 1.07997 * 119.99394 * 0.02562 * 21 20 18 39 39 H 1.07998 * 120.00147 * 180.25547 * 22 21 20 40 40 H 1.07998 * 120.00260 * 179.97438 * 26 23 22 41 41 H 1.07999 * 119.99864 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4446 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1310 0.9701 -1.2861 8 7 5.4380 0.8380 -1.3493 9 14 3.0740 0.5148 -2.7575 10 1 2.6850 -0.9152 -2.6640 11 1 1.8532 1.3601 -2.7704 12 1 3.8436 0.7377 -4.0078 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3363 2.6317 0.4528 16 6 0.0541 3.3314 2.6727 17 7 -1.3052 3.8650 2.5548 18 6 -1.8683 4.5103 3.5955 19 8 -1.2483 4.6500 4.6315 20 6 -3.2409 5.0485 3.4767 21 6 -3.9510 4.8930 2.2846 22 6 -5.2309 5.3899 2.1755 23 6 -5.8144 6.0591 3.2537 24 6 -7.1428 6.5813 3.1383 25 7 -8.1965 6.9957 3.0467 26 6 -5.1019 6.2191 4.4444 27 6 -3.8240 5.7175 4.5548 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9924 1.1425 -0.6140 34 1 2.2853 2.1184 1.9978 35 1 0.0905 2.6048 3.4843 36 1 0.7469 4.1463 2.8829 37 1 -1.8002 3.7532 1.7282 38 1 -3.4981 4.3794 1.4495 39 1 -5.7816 5.2659 1.2548 40 1 -5.5527 6.7369 5.2780 41 1 -3.2728 5.8416 5.4752 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132325067.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:27 Heat of formation + Delta-G solvation = -22.031480 kcal Electronic energy + Delta-G solvation = -24653.774286 eV Core-core repulsion = 20919.670344 eV Total energy + Delta-G solvation = -3734.103942 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71745 -39.60110 -38.74765 -36.79815 -35.69732 -34.52638 -32.62409 -32.20490 -31.69933 -31.55678 -28.43586 -26.93471 -24.96206 -23.19442 -22.43604 -21.22247 -20.80634 -19.76144 -19.47125 -18.73312 -17.64887 -16.68399 -16.05088 -15.98220 -15.72704 -15.26712 -15.18086 -14.89515 -14.58495 -14.39693 -14.15650 -13.88670 -13.55473 -13.25163 -13.24698 -13.02112 -12.67303 -12.63087 -12.61887 -12.46975 -12.22125 -11.79578 -11.64933 -11.04420 -10.82079 -10.56866 -10.33489 -9.92158 -9.82507 -9.64098 -9.57271 -9.47940 -9.29365 -8.99375 -8.60563 -8.28292 -6.63743 -4.32362 -0.10976 0.76452 2.05705 2.17011 2.73487 2.84354 2.94968 3.29301 3.31414 3.38443 3.43351 3.51520 3.79270 4.23669 4.27228 4.33482 4.37039 4.68485 4.85086 5.04453 5.08435 5.11587 5.30546 5.33601 5.38636 5.56500 5.67590 5.76929 5.90368 5.95795 6.03841 6.11390 6.16092 6.56040 6.63568 6.76186 6.87014 6.96929 7.15249 7.21662 7.26026 7.50325 7.88571 8.13268 8.26046 8.54470 8.75930 9.38574 10.76977 Molecular weight = 315.14amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.002413 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.342665 B =11599.285545 C =12264.085851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.242 3.758 4 H 0.050 0.950 5 C -0.612 4.612 6 H 0.063 0.937 7 C 0.036 3.964 8 N -0.902 5.902 9 Si 1.049 2.951 10 H -0.280 1.280 11 H -0.273 1.273 12 H -0.287 1.287 13 N -0.692 5.692 14 C 0.497 3.503 15 O -0.550 6.550 16 C 0.096 3.904 17 N -0.706 5.706 18 C 0.555 3.445 19 O -0.534 6.534 20 C -0.100 4.100 21 C -0.085 4.085 22 C -0.075 4.075 23 C -0.007 4.007 24 C 0.252 3.748 25 N -0.410 5.410 26 C -0.078 4.078 27 C -0.061 4.061 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.032 0.968 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.269 0.731 34 H 0.396 0.604 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.412 0.588 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.847 7.280 9.922 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.068 0.932 5 C -0.651 4.651 6 H 0.081 0.919 7 C -0.170 4.170 8 N -0.535 5.535 9 Si 0.878 3.122 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.214 1.214 13 N -0.340 5.340 14 C 0.281 3.719 15 O -0.430 6.430 16 C -0.031 4.031 17 N -0.361 5.361 18 C 0.342 3.658 19 O -0.412 6.412 20 C -0.104 4.104 21 C -0.104 4.104 22 C -0.096 4.096 23 C -0.011 4.011 24 C -0.063 4.063 25 N -0.085 5.085 26 C -0.099 4.099 27 C -0.080 4.080 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.230 0.770 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.252 0.748 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.458 7.327 8.284 22.381 hybrid contribution 0.600 0.347 1.583 1.728 sum -18.858 7.674 9.867 22.624 Atomic orbital electron populations 1.21894 0.97153 0.99133 1.02007 1.22264 0.94011 0.99816 1.01576 1.19303 0.96083 0.88562 0.82203 0.93188 1.22150 0.89579 1.48435 1.04892 0.91900 1.25711 0.97513 0.93573 1.00240 1.70828 1.04428 1.42184 1.36085 0.83935 0.75280 0.77159 0.75847 1.20685 1.19895 1.21354 1.46200 1.14191 1.55148 1.18435 1.20275 0.83251 0.79584 0.88797 1.90650 1.51069 1.60478 1.40810 1.21193 0.84479 1.00025 0.97410 1.45623 1.16287 1.56855 1.17308 1.18184 0.85902 0.78282 0.83438 1.90798 1.63667 1.58088 1.28673 1.20187 0.94398 1.00524 0.95310 1.21384 0.93933 0.97959 0.97099 1.21149 0.94909 0.95669 0.97866 1.16167 0.87320 1.01367 0.96208 1.25685 0.92819 0.93847 0.93988 1.81289 1.11472 1.08552 1.07194 1.21174 0.93956 0.98487 0.96273 1.21232 0.93946 0.94060 0.98728 0.93254 0.92841 0.94863 0.92088 0.92608 0.92043 0.77026 0.88437 0.88352 0.74813 0.83978 0.84092 0.84151 0.83339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 8.52 37.16 0.32 -2.29 16 2 C -0.14 -2.82 5.20 -26.73 -0.14 -2.96 16 3 C 0.24 5.29 1.81 -69.08 -0.13 5.17 16 4 H 0.05 1.21 6.07 -51.93 -0.32 0.89 16 5 C -0.61 -15.65 9.09 -34.44 -0.31 -15.96 16 6 H 0.06 1.68 7.95 -52.48 -0.42 1.27 16 7 C 0.04 0.97 5.42 -17.82 -0.10 0.87 16 8 N -0.90 -26.15 13.70 55.43 0.76 -25.39 16 9 Si 1.05 24.28 25.39 -169.99 -4.32 19.96 16 10 H -0.28 -6.15 6.73 56.52 0.38 -5.77 16 11 H -0.27 -6.05 6.38 56.52 0.36 -5.69 16 12 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.69 -12.22 5.03 -54.93 -0.28 -12.49 16 14 C 0.50 7.84 6.49 -10.98 -0.07 7.77 16 15 O -0.55 -9.90 12.81 5.56 0.07 -9.83 16 16 C 0.10 1.17 6.15 -5.19 -0.03 1.13 16 17 N -0.71 -7.83 5.48 -62.40 -0.34 -8.18 16 18 C 0.56 6.18 7.77 -12.30 -0.10 6.08 16 19 O -0.53 -7.48 16.33 5.33 0.09 -7.39 16 20 C -0.10 -0.83 5.88 -104.90 -0.62 -1.45 16 21 C -0.09 -0.56 9.52 -39.25 -0.37 -0.93 16 22 C -0.08 -0.43 9.73 -39.23 -0.38 -0.81 16 23 C -0.01 -0.04 5.73 -106.90 -0.61 -0.66 16 24 C 0.25 2.04 15.32 -22.47 -0.34 1.69 16 25 N -0.41 -4.34 18.54 41.84 0.78 -3.56 16 26 C -0.08 -0.44 9.73 -39.23 -0.38 -0.82 16 27 C -0.06 -0.43 9.58 -39.25 -0.38 -0.80 16 28 H 0.05 0.86 5.64 -51.93 -0.29 0.56 16 29 H 0.05 1.01 7.87 -51.93 -0.41 0.60 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.32 4.43 -51.93 -0.23 1.09 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.27 7.73 8.72 -40.82 -0.36 7.37 16 34 H 0.40 6.21 8.53 -40.82 -0.35 5.86 16 35 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.41 4.27 5.46 -40.82 -0.22 4.05 16 38 H 0.14 0.79 6.39 -52.49 -0.34 0.46 16 39 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.15 1.00 7.64 -52.49 -0.40 0.60 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -31.86 350.81 -6.32 -38.18 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.72 Total: 7.38 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -3.64 Total: -3.98 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.92 Total: -49.62 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.16 Total: -17.22 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -4.32 Total: 19.96 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.86 -6.32 -38.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132325067.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.150 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds